The origin and genetic relationships of the Baikal seal, Phoca sibirica, by restriction analysis of mitochondrial DNA

The origin and genetic relationships of the Baikal seal, Phoca sibirica, were studied by restriction fragment length polymorphism analysis of mitochondrial DNA (mtDNA). Using 17 different six-base recognition restriction endonucleases, we examined 98 Baikal seals, and two other related species, the ringed seal, P. hispida, (n=87), and the Caspian seal, P. caspica, (n=94). Analysis revealed the existence of 87 mtDNA haplotypes in the total of 279 specimens. The haplotypes of each species were divided into different clusters on a dendrogram obtained by UPGMA based on haplotype frequency and mtDNA base substitution. No common haplotypes were found among the species examined. The Baikal seal is much more closely related to the ringed seal than the Caspian seal. The amount of divergence suggested that an ancestor of the Baikal seal came down to the lake approximately 0.4 million years ago as was previously indicated by paleontological studies. The seals examined here showed lower variabilities.     

SEASONAL MOVEMENTS AND DIVE PATTERNS OF JUVENILE BAIKAL SEALS, PHOCA SIBIRICA

The Baikal seal ( Phoca sibirica ) is confined to Lake Baikal in southern Siberia. The breeding distribution of seals in winter, when the lake is frozen over, is fairly well known, whereas their movements and foraging behaviors have been relatively unstudied. With satellite-linked radio transmitters, we documented the movements and dive patterns of four juvenile Baikal seals from autumn through spring. The seals moved extensively in the lake, each covering minimal distances of 400–1,600 km between September and early May. They spent little time hauled out from September through May and, apparently, dived continuously. Dives were mostly to depths of lo-50 m, though a few exceeded 300 m. Most lasted between 2 and 6 mm, within theoretical aerobic dive limits, although a few exceeded 40 min. The exceptionally long dives occurred while the seals were in areas of extensive ice cover, suggesting that they were, perhaps, under ice-pilotage in search of breathing holes rather than foraging dives. Otherwise, the dive performances of these Baikal seals were, relative to body mass, similar to those of other well-studied phocids. Movements and dive patterns of seals appeared to be primarily associated with seasonal and die1 movements of their primary prey, golomyanka and sculpins, and secondarily correlated with patterns of ice formation and thaw.     

Contrasting behavior between two populations of an ice‐obligate predator in East Antarctica

The Austral autumn–winter is a critical period for capital breeders such as Weddell seals that must optimize resource acquisition and storage to provision breeding in the subsequent spring. However, how Weddell seals find food in the winter months remains poorly documented. We equipped adult Weddell seals after their annual molt with satellite‐relayed data loggers at two sites in East Antarctica: Dumont D'Urville (n = 12, DDU) and Davis (n = 20). We used binomial generalized mixed‐effect models to investigate Weddell seals’ behavioral response (i.e., “hunting” vs. “transit”) to physical aspects of their environment (e.g., ice concentration). Weddell seal foraging was concentrated to within 5 km of a breathing hole, and they appear to move between holes as local food is depleted. There were regional differences in behavior so that seals at Davis traveled greater distances (three times more) and spent less time in hunting mode (half the time) than seals at DDU. Despite these differences, hunting dives at both locations were pelagic, concentrated in areas of high ice concentration, and over areas of complex bathymetry. There was also a seasonal change in diving behavior from transiting early in the season to more hunting during winter. Our observations suggest that Weddell seal foraging behavior is plastic and that they respond behaviorally to changes in their environment to maximize food acquisition and storage. Such plasticity is a hallmark of animals that live in very dynamic environments such as the high Antarctic where resources are unpredictable.     

Age and sex composition of seals killed by polar bears in the eastern Beaufort Sea

Background

Polar bears (Ursus maritimus) of the Beaufort Sea enter hyperphagia in spring and gain fat reserves to survive periods of low prey availability. We collected information on seals killed by polar bears (n = 650) and hunting attempts on ringed seal (Pusa hispida) lairs (n = 1396) observed from a helicopter during polar bear mark-recapture studies in the eastern Beaufort Sea in spring in 1985–2011. We investigated how temporal shifts in ringed seal reproduction affect kill composition and the intraspecific vulnerabilities of ringed seals to polar bear predation.

Principal Findings

Polar bears primarily preyed on ringed seals (90.2%) while bearded seals (Erignathus barbatus) only comprised 9.8% of the kills, but 33% of the biomass. Adults comprised 43.6% (150/344) of the ringed seals killed, while their pups comprised 38.4% (132/344). Juvenile ringed seals were killed at the lowest proportion, comprising 18.0% (62/344) of the ringed seal kills. The proportion of ringed seal pups was highest between 2007–2011, in association with high ringed seal productivity. Half of the adult ringed seal kills were ≥21 years (60/121), and kill rates of adults increased following the peak of parturition. Determination of sex from DNA revealed that polar bears killed adult male and adult female ringed seals equally (0.50, n = 78). The number of hunting attempts at ringed seal subnivean lair sites was positively correlated with the number of pup kills (r² = 0.30, P = 0.04), but was not correlated with the number of adult kills (P = 0.37).

Conclusions/Significance

Results are consistent with decadal trends in ringed seal productivity, with low numbers of pups killed by polar bears in spring in years of low pup productivity, and conversely when pup productivity was high. Vulnerability of adult ringed seals to predation increased in relation to reproductive activities and age, but not gender.     

Holocene changes in the ecology of northern fur seals: insights from stable isotopes and archaeofauna

The remains of northern fur seals (Callorhinus ursinus) are among the most abundant of pinniped elements recovered from mainland coastal archaeological sites in both California and Oregon. This is surprising as all contemporary northern fur seals breed exclusively on offshore islands, primarily at high latitudes, and the species is otherwise pelagic. The vulnerability of these animals to human predation suggests that either humans were foraging much further offshore than has been presumed or alternatively that the ecology of these animals has shifted during the late Holocene. We used isotopic and archaeofaunal analysis of the remains of pinnipeds from the middle to late Holocene of central and northern California to clarify the breeding and foraging behavior, and migration patterns of these ancient animals. The carbon and nitrogen isotope compositions of ancient northern fur seals reveal that these animals fed as far offshore as they do today, and that they remained at middle latitudes throughout the year. From an archaeological site at Moss Landing, California, we identified 16 skeletal elements from at least 12 very small northern fur seal pups. From another site near Mendocino, California, we identified the remains of at least 6 pups. We estimate the size and age of 5 of the young animals using sex-specific regressions of body length on the short dentary length derived from measurements of modern specimens. Our estimates indicate these ancient pups were substantially smaller, and therefore younger, than modern 3-month-old northern fur seal pups from similar latitudes and their nitrogen isotope compositions suggest they had not been weaned. As present-day northern fur seals do not leave their rookeries until they are at least 4 months old, we consider it highly unlikely that these ancient pups swam to these mainland locations from some distant island rookery. While there are numerous nearshore rocky outcrops along the Mendocino Coast, which may have supported small breeding colonies, the Moss Landing site is centered on a 40-km-long sandy beach, and is more than 120 km from what at the time were the nearest offshore islands. We conclude that northern fur seal adult females, subadults, and pups whose remains were recovered at the Moss Landing archaeological site must have been taken at a mainland rookery. Evidence that northern fur seals once bred on the mainland at this central California location suggests that the abundant remains of these animals at numerous other archaeological sites along the California coast also reflect the presence of nearby mainland rookeries. Based on the relative abundance of their remains in ancient human occupation sites and the widespread distribution of sites where their remains have been found, it appears that northern fur seals were once the predominant pinniped throughout a region where they now only rarely occur. Furthermore, their presence along the central and northern California coasts appears to have once severely limited the distribution of other pinnipeds, which are now common to the region.     

Amino acid sequence of myoglobin from seals from Lake Baikal]

The primary structure of myoglobin of the seal of Lake Baikal (East Siberia) Phoca siberica, determined by sequencing the whole protein and peptides obtained by the cyanogen bromide or proteinase cleavage and separated by the microcolumn liquid chromatography, was found to be identical to the primary structures of myoglobins of the harbour seal Phoca vitulina largha and the grey seal Halehoerus gryphus. It suggests that these species separated from a common ancestor less than seven million years ago.     

Antibodies to human-related H3 influenza A virus in Baikal seals (Phoca sibirica) and ringed seals (Phoca hispida) in Russia

Antibodies to influenza A virus were detected using enzyme-linked immunosorbent assay (ELISA) in the sera from two of seven Baikal seals (Phoca sibrica) and from five of six ringed seals (Phoca hispida) in Russia. In a hemagglutination-inhibition test using H1-H15 reference influenza A viruses, ELISA-positive sera from one Baikal seal and four ringed seals reacted to A/Aichi/2/68 (H3N2) and A/Bangkok/1/79 (H3N2) strains. One ringed seal serum sample reacted to A/seal/Massachusetts/1/80 (H7N7). The present results suggested that human-related H3 viruses were prevalent in Baikal seals and ringed seals inhabiting the central Russian Arctic.     

Man's impact on seals

The major direct effects of man on seal populations are caused by hunting. Subsistence hunting using traditional methods has a long history and generally resulted in a balance between the hunters and the seals. More recently commercial hunting, using sophisticated methods, has reduced many seal stocks to low levels. In some cases no balance was achieved and either the seals or the industry became extinct. Minor direct effects of man on seals include sport hunting and the destruction of seals for fisheries protection. These are generally of local importance only. Indirect effects may be either detrimental or beneficial to seal stocks. Detrimental effects include fishing operations which may result in the unintentional destruction of seals or compete with seals for available limited fish stocks, habitat destruction, pollution, and anthropogenic disturbance. Beneficial indirect effects include increase of available food stocks resulting from the reduction of another predator, increase of available breeding habitat as a result of human population shifts, and changes in ethical attitudes to seals.     

EFFECTS OF AN OFFSHORE OIL DEVELOPMENT ON LOCAL ABUNDANCE AND DISTRIBUTION OF RINGED SEALS (PHOCA HISPIDA) OF THE ALASKAN BEAUFORT SEA1

This study investigates how densities of ringed seals were affected by construction and oil production activities at Northstar, an artificial island built in the nearshore Alaskan Beaufort Sea. Intensive and replicated aerial surveys of seals on landfast ice were conducted during six spring seasons: for three seasons before island construction began (1997–1999); after a winter of intensive island construction (2000); and after more limited construction plus drilling (2001) and drilling plus oil production (2002). A Poisson regression model was used to examine seal densities relative to distance from Northstar after allowance for environmental covariates. Post hoc power analysis indicated that the study design and Poisson regression approach had high power to detect small‐scale changes in seal densities near Northstar if such changes had occurred. However, seal densities during spring were not significantly affected by proximity to Northstar in 2000–2002. Habitat, temporal, and weather factors did have significant effects on seal densities. This study shows that effects of the Northstar oil development on local distribution of basking ringed seals are no more than slight, and are small relative to the effects of natural environmental factors. An understanding of environmental effects is essential when assessing potential impacts of industrial activity on ringed seals.     

Increasing numbers of harbour seals and grey seals in the Solent

Harbour seals (Phoca vitulina) and grey seals (Halichoerus grypus) both occur within the UK, but display regional contrasting population trends. While grey seals are typically increasing in number, harbour seals have shown varying trends in recent decades following repeated pandemics. There is a need for monitoring of regional and local populations to understand overall trends. This study utilized a 20‐year dataset of seal counts from two neighboring harbours in the Solent region of south England. Generalized additive models showed a significant increase in the numbers of harbour (mean 5.3–30.5) and grey (mean 0–12.0) seals utilizing Chichester Harbour. Conversely, in Langstone Harbour there has been a slight decrease in the number of harbour seals (mean 5.3–4.0). Accompanying photographic data from 2016 to 18 supports the increase in seal numbers within Chichester Harbour, with a total of 68 harbour and 8 grey seals identified. These data also show evidence of site fidelity of harbour seals in this area, with almost a quarter of animals resighted within the past three years. Overall, this long‐term study indicates an increasing number of both harbour and grey seals within the Solent. However, more research is required to identify the drivers of this trend.     

Pinniped phylogeny and a new hypothesis for their origin and dispersal

The relationships and the zoogeography of the three extant pinniped families, Otariidae (sea lions and fur seals), Odobenidae (one extant species, the walrus), and Phocidae (true seals), have been contentious. Here, we address these topics in a molecular study that includes all extant species of true seals and sea lions, four fur seals and the walrus. Contrary to prevailing morphological views the analyses conclusively showed monophyletic Pinnipedia with a basal split between Otarioidea (Otariidae+Odobenidae) and Phocidae. The northern fur seal was the sister to all remaining otariids and neither sea lions nor arctocephaline fur seals were recognized as monophyletic entities. The basal Phocidae split between Monachinae (monk seals and southern true seals) and Phocinae (northern true seals) was strongly supported. The phylogeny of the Phocinae suggests that the ancestors of Cystophora (hooded seal) and the Phocini (e.g. harp seal, ringed seal) adapted to Arctic conditions and ice-breeding before 12 MYA (million years ago) as supported by the white natal coat of these lineages. The origin of the endemic Caspian and Baikal seals was dated well before the onset of major Pleistocene glaciations. The current findings, together with recent advances in pinniped paleontology, allow the proposal of a new hypothesis for pinniped origin and early dispersal. The hypothesis posits that pinnipeds originated on the North American continent with early otarioid and otariid divergences taking place in the northeast Pacific and those of the phocids in coastal areas of southeast N America for later dispersal to colder environments in the N Atlantic and the Arctic Basin, and in Antarctic waters.     

西藏昌都卡若新石器时代遗址动物群

<正> 本文记述的哺乳动物和其他动物的骨骼,是1977年在西藏昌都卡若遗址中采集的。从事这一发掘工作的西藏文物管理委员会考古队,将其中有参考价值的部分标本送来我所,经作者初步观察与鉴定,共有十多种动物。遗址的兽类材料尽管不甚丰富,但总起来看,还是能够反映昌都新石器时代人类生活的一个侧面,为考古学家恢复该遗址的社会形态和当时的自然环境,以及对西藏高原的隆起等提供了必要的科学依据。     

Middle Palaeolithic and Neolithic Occupations around Mundafan Palaeolake,Saudi Arabia: Implications for Climate Change and Human Dispersals

The Arabian Peninsula is a key region for understanding climate change and human occupation history in a marginal environment. The Mundafan palaeolake is situated in southern Saudi Arabia, in the Rub’ al-Khali (the ‘Empty Quarter’), the world’s largest sand desert. Here we report the first discoveries of Middle Palaeolithic and Neolithic archaeological sites in association with the palaeolake. We associate the human occupations with new geochronological data, and suggest the archaeological sites date to the wet periods of Marine Isotope Stage 5 and the Early Holocene. The archaeological sites indicate that humans repeatedly penetrated the ameliorated environments of the Rub’ al-Khali. The sites probably represent short-term occupations, with the Neolithic sites focused on hunting, as indicated by points and weaponry. Middle Palaeolithic assemblages at Mundafan support a lacustrine adaptive focus in Arabia. Provenancing of obsidian artifacts indicates that Neolithic groups at Mundafan had a wide wandering range, with transport of artifacts from distant sources.     

A study of Common seals in the Wash

The large population of Common seals in the Wash has been studied over a number of years. Aerial surveys, although useful for counting seals present at any one time, do not give a total count of the population. Various other methods including tagging, track counting and analysis of hunting returns have been used to make a population estimate. The seal population has not been significantly affected by hunting, and water storage schemes proposed for the Wash are unlikely to cause much disturbance.     

Seal eating by walruses in the Bering and Chukchi Seas

Summary Walruses (Odobenus rosmarus) feed primarily on benthic invertebrates, but they are known to eat seals (Phocidae) occasionally, ostensibly when the benthic foods are unavailable. We investigated reports of a marked increase in occurrence of seal-eating walruses in the Bering Strait region in the late 1970's by examining stomach contents of animals taken in the spring harvests by Eskimos. We also obtained relevant information during visual surveys of marine mammals in the region. Our findings from the stomachs indicated that seal eating was 10 to 100 times more common during the 1970's and early 1980's (0.6–3.0%, N=645) than it had been in the previous three decades (0.07–0.20%, N=4015). In addition, we observed walruses in possession of seal remains in 1978 and 1979, where we had not seen such a phenomenon before in the previous 25 years. We attribute the increased predatory interaction between seals and walruses partly to a larger walrus population and, especially in 1979, to unusually restrictive spring ice conditions, which tended to cause greater than usual overlap of their distributions. Stomach contents of walruses taken in the Chukchi Sea in summer, where the ranges of walruses and seals overlap broadly in all years, have indicated a similarly high rate of occurrence of seal eaters (8.6% in the 1960's, N=35; 11.4% in 1983, N=44). As a whole, our findings indicate that most of the seal eating is predation, rather than scavenging of carrion. They also indicate that it is not rare or aberrant but common behavior, and that it could exert a significant impact on seal populations in some areas.     

The enigma of the landlocked Baikal and Caspian seals addressed through phylogeny of phocine mitochondrial sequences

The endemic seals of Lake Baikal ( Phoca sibirica ) and of the Caspian Sea ( Phoca caspica ) inhabit ancient continental basins that have remained isolated from primary marine seal habitats for millions of years. The species have been united with the Arctic ringed seal, Phoca hispida , into (sub)genus Pusa , but the age and route of invasions to/from the continental basins remain controversial. A phylogenetic analysis of nine northern phocines based on three mitochondrial genes (Cyt b , COI, COII, total 3369 bp) provided no support for the monophyly of the Pusa group. The three species are involved in an apparent polytomy with the boreal harbour seal, Phoca vitulina , and grey seal, Halichoerus grypus . From the average estimated interspecies divergence (4.1%), the radiation of this group plausibly took place in the Late Pliocene 2–3 Mya. This dating does not fit the prevailing hypotheses on the origin of the landlocked taxa in association with Middle Pleistocene glacial events, or of the Caspian seal as a direct descendant of Miocene fossil phocines of the continental Paratethyan basin. The current phocine diversity more likely results from marine radiations, and the continental seals invaded their basins through Plio-Pleistocene (marine) connections from the north. The palaeohydrography that would have enabled the invasions at that time still remains an enigma.  © 2006 The Linnean Society of London, Biological Journal of the Linnean Society , 2006, 88 , 61–72.     

SEALNET: Facial recognition software for ecological studies of harbor seals

Methods for long‐term monitoring of coastal species such as harbor seals (Phoca vitulina) are often costly, time‐consuming, and highly invasive, underscoring the need for improved techniques for data collection and analysis. Here, we propose the use of automated facial recognition technology for identification of individual seals and demonstrate its utility in ecological and population studies. We created a software package, SealNet, that automates photo identification of seals, using a graphical user interface (GUI) software to detect, align, and chip seal faces from photographs and a deep convolutional neural network (CNN) suitable for small datasets (e.g., 100 seals with five photos per seal) to classify individual seals. We piloted the SealNet technology with a population of harbor seals located within Casco Bay on the coast of Maine, USA. Across two years of sampling, 2019 and 2020, at seven haul‐out sites in Middle Bay, we obtained a dataset optimized for the development and testing of SealNet. We processed 1752 images representing 408 individual seals and achieved 88% Rank‐1 and 96% Rank‐5 accuracy in closed set seal identification. In identifying individual seals, SealNet software outperformed a similar face recognition method, PrimNet, developed for primates but retrained on seals. The ease and wealth of image data that can be processed using SealNet software contributes a vital tool for ecological and behavioral studies of marine mammals in the developing field of conservation technology.

In this paper, we describe the successful application of our newly developed automated facial recognition software as a tool for ecological analysis of harbor seals (Phoca vitulina). We outline an emerging method of data collection and analysis that facilitates rapid interpretation of large photo datasets over wide temporal and geographic scales. In addition, we use this machine learning‐based technology in a preliminary ecological study in a wild population of seals in the Casco Bay region of Maine to demonstrate the effectiveness of this non‐invasive method for use in mark‐recapture and site fidelity studies in the field.     

Sharks shape the geometry of a selfish seal herd: experimental evidence from seal decoys

Many animals respond to predation risk by forming groups. Evolutionary explanations for group formation in previously ungrouped, but loosely associated prey have typically evoked the selfish herd hypothesis. However, despite over 600 studies across a diverse array of taxa, the critical assumptions of this hypothesis have remained collectively untested, owing to several confounding problems in real predator–prey systems. To solve this, we manipulated the domains of danger of Cape fur seal (Arctocephalus pusillus pusillus) decoys to provide evidence that a selfish reduction in a seals'' domain of danger results in a proportional reduction in its predation risk from ambush shark attacks. This behaviour confers a survival advantage to individual seals within a group and explains the evolution of selfish herds in a prey species. These findings empirically elevate Hamilton''s selfish herd hypothesis to more than a ‘theoretical curiosity’.     

The Role of Canine Distemper Virus and Persistent Organic Pollutants in Mortality Patterns of Caspian Seals (Pusa caspica)

Persistent organic pollutants are a concern for species occupying high trophic levels since they can cause immunosuppression and impair reproduction. Mass mortalities due to canine distemper virus (CDV) occurred in Caspian seals (Pusa caspica), in spring of 1997, 2000 and 2001, but the potential role of organochlorine exposure in these epizootics remains undetermined. Here we integrate Caspian seal mortality data spanning 1971–2008, with data on age, body condition, pathology and blubber organochlorine concentration for carcases stranded between 1997 and 2002. We test the hypothesis that summed PCB and DDT concentrations contributed to CDV associated mortality during epizootics. We show that age is the primary factor explaining variation in blubber organochlorine concentrations, and that organochlorine burden, age, sex, and body condition do not account for CDV infection status (positive/negative) of animals dying in epizootics. Most animals (57%, n = 67) had PCB concentrations below proposed thresholds for toxic effects in marine mammals (17 µg/g lipid weight), and only 3 of 67 animals had predicted TEQ values exceeding levels seen to be associated with immune suppression in harbour seals (200 pg/g lipid weight). Mean organonchlorine levels were higher in CDV-negative animals indicating that organochlorines did not contribute significantly to CDV mortality in epizootics. Mortality monitoring in Azerbaijan 1971–2008 revealed bi-annual stranding peaks in late spring, following the annual moult and during autumn migrations northwards. Mortality peaks comparable to epizootic years were also recorded in the 1970s–1980s, consistent with previous undocumented CDV outbreaks. Gompertz growth curves show that Caspian seals achieve an asymptotic standard body length of 126–129 cm (n = 111). Males may continue to grow slowly throughout life. Mortality during epizootics may exceed the potential biological removal level (PBR) for the population, but the low frequency of epizootics suggest they are of secondary importance compared to anthropogenic sources of mortality such as fishing by-catch.     

Habitat use by harbour seals (Phoca vitulina) in a seasonally ice-covered region, the western Hudson Bay

Over the last few decades, the period of ice cover in Hudson Bay has decreased, owing to climate warming, with breakup occurring approximately 3 weeks earlier than it did 30 years ago. The trend towards lengthening of the open water season has led to speculation that ringed seal numbers would decline, but then harbour seals might become numerous enough to replace ringed seals in the diet of polar bears. The movement patterns of 18 harbour seals equipped with satellite-linked transmitters in the Churchill River estuary (western Hudson Bay) were examined, as well as the dive behaviour of 11 of these seals. During the ice-free period, seals followed a general central place-foraging strategy, making repeated trips between their haul-out site in the Churchill River estuary and nearshore areas (<20 km) near the river mouth and estuary. Seal behaviour changed significantly as ice started to form along the coast of western Hudson Bay: animals remained significantly farther from the Churchill River haul-out site and from the coast and performed longer and deeper dives. However, throughout the entire tracking period, whether ice was present or not, all animals restricted their movements to a narrow band of shallow coastal waters (<50 m depth) along a 600-km stretch of the western Hudson Bay coastline, centred on the Churchill River estuary haul-out site. This natural self-limitation to nearshore shallow waters could restrict the potential for the population to increase in size and replace ringed seals as a primary energy resource for polar bears.