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1.
Integrated likelihood functions for non-Bayesian inference   总被引:1,自引:0,他引:1  
Severini  Thomas A. 《Biometrika》2007,94(3):529-542
Consider a model with parameter = (, ), where is the parameterof interest, and let L(, ) denote the likelihood function. Oneapproach to likelihood inference for is to use an integratedlikelihood function, in which is eliminated from L(, ) by integratingwith respect to a density function (|). The goal of this paperis to consider the problem of selecting (|) so that the resultingintegrated likelihood function is useful for non-Bayesian likelihoodinference. The desirable properties of an integrated likelihoodfunction are analyzed and these suggest that (|) should be chosenby finding a nuisance parameter that is unrelated to and thentaking the prior density for to be independent of . Such anunrelated parameter is constructed and the resulting integratedlikelihood is shown to be closely related to the modified profilelikelihood.  相似文献   

2.
The left-hand side of equation (2·8), on p. 671, shouldread {1 (1 – 1)}–1/2 (21 – 1) rather than{(1 – 1)/1}1/2 (21 – 1). Reflecting this change,the left-hand side of equation (3·1) on the same pageshould be altered to , and the formula at the foot of p. 677 should be modified to {1 (1– 1)}–1/2 (21 – 1) + Op(n–1/2). No otherformula is affected, and the left-hand side of (2·8)is still increasing in 1. The numerical results, discussed in4, are influenced in minor ways. In the simulation study, absolutebias is reduced, and variance is either slightly increased orslightly decreased. In the real-data example, using the nonparametricapproach to analysis, mean squared error is further reduced,from 0·0011 to 0·0004. We are grateful to HiroKasahara and Katsumi Shimotsu for pointing out the error.  相似文献   

3.
Seed germination rates (GR =inverse of time to germination)are sensitive to genetic, environmental, and physiological factors.We have compared the GR of tomato (Lycopersicon esculentum Mill.)seeds of cultivar T5 to those of rapidly germinating L. esculentumgenotypes PI 341988 and PI 120256 over a range of water potential(). The influence of seed priming treatments and removal ofthe endosperm/testa cap enclosing the radicle tip on germinationat reduced were also assessed. Germination time-courses atdifferent 's were analysed according to a model that identifieda base, or minimum, allowing germination of a specific percentage(g) of the seed population (b(g)), and a ‘hydrotime constant’(H) indicating the rate of progress toward germination per MPa.h.The distribution of b(g) determined by probit analysis was characterizedby a mean base (b) and the standard deviation in b among seeds(b). The three derived parameters, b, b) and H, were sufficientto predict the time-courses of germination of intact seeds atany . A normalized time-scale for comparing germination responsesto reduced is introduced. The time to germination at any (tg())can be normalized to be equivalent to that observed in water(tg(0)) according to the equation tg(0)=[l–(/b(g))]tg().PI 341988 seeds were more tolerant of reduced and had a morerapid GR than T5 seeds due to both a lower b and a smaller H.The rapid germination of PI 120256, on the other hand, couldbe attributed entirely to a smaller H. Seed priming (6 d in–1.2 MPa polyethylene glycol 8000 solution at 20 ?C followedby drying) increased GR at all >b(g), but did not lower theminimum allowing germination; i.e. priming reduced H withoutlowering b. Removing the endosperm/testa cap (cut seeds) markedlyincreased GR and lowered the mean required to inhibit germinationby 0.7 to 0.9 MPa. However, this resulted primarily from downwardadjustment in b during the incubation of cut seeds at low inthe test solutions. The difference in b between intact and cutseeds incubated at high was much less (0.l MPa), indicatingthat at the time of radicle protrusion, the endosperm had weakenedto the point where it constituted only a small mechanical barrier.In the intact seed, endosperm weakening and the downward adjustmentin embryo b ceased at < –0.6 MPa, while the reductionin H associated with priming proceeded down to at least –1.2MPa. Based on these data and on the pressure required to pushthe embryos from the seeds at various times after imbibition,it appears that the primary effect of priming was to shortenthe time required for final endosperm weakening to occur. However,as priming increased GR even in cut seeds, priming effects onthe embryo may control the rate of endosperm weakening. Key words: tomato, Lycopersicon esculentum Mill., water potential, germination rate, seed priming, genetic variation  相似文献   

4.
Weighted finite population sampling to maximize entropy   总被引:1,自引:0,他引:1  
Attention is drawn to a method of sampling a finite populationof N units with unequal probabilities and without replacement.The method was originally proposed by Stern & Cover (1989)as a model for lotteries. The method can be characterized asmaximizing entropy given coverage probabilities i, or equivalentlyas having the probability of a selected sample proportionalto the product of a set of ‘weights’ wi. We showthe essential uniqueness of the wi given the i. We present twomethods for stepwise selection of sampling units, and correspondingschemes for removal of units that can be used in connectionwith sample rotation. Inclusion probabilities of any order canbe written explicitly in closed form. Second-order inclusionprobabilities ij satisfy the condition O < ij < ij, whichguarantees Yates & Grundy‘s variance estimator tobe unbiased, definable for all samples and always nonnegativefor any sample size.  相似文献   

5.
nAlkyl - and -lactosides, galactosides and glucosides with differentalkyl chain lengths (C2, C8, C14, and C20) were synthesizedand used as acceptors for sialyltransferases from rat liverGolgi vesicles. The -galactosides, -glucosides, and both - and-lactosides, were sialylated. Keeping the acceptor concentrationconstant, sialylation rates reached a maximum for the n-octyl- and -lactosides, n-Octyl -galactoside and noctyl -glucoside,respectively. noctyl -glucoside, respectivwly. n-Octyl -galactosideand n-octyl -glucoside were not sialylated. The reaction productswere characterized by TLC. With n-octyl lactoside and galactosideas acceptors, two major sialylation products were formed. Thjeycould be separated by preparative TLC, and their structureswere identified as 2–3 and 2–6 sialylated acceptors,respectively, by a combination of periodated oxidation, NaBD4reduction,permethylation and subsequent analysis by fast atombombardment mass spectrometry (FAB-MS). The structure of thesingle product obtained from n-ictyl -glucoside was determinedto be the 2–6 sialylated glucoside. Competition experimentswith n-octyl lactoside and lactosylceramide and gangliosideGal1-3GalNAc1-4(NeuAc2–3)Gal1–4Glcbeeta1–1Cer(GM1) as acceptors for sialyltransferases suggested that SAT-I[NeuAc2–3Gal1–4Glc1-1Cer (GM3) synthase] was atleast in least in part responsible for the 2–3 sialylationof n-octyl lactoside. alkylgalactosides alkylglucosides alkyllactosides neoglycolipids sialytransferases  相似文献   

6.
KUMAR  A; ELSTON  J 《Annals of botany》1992,70(1):3-9
Various kinds of measurement of tissue water status were madeseveral times during water stress and recovery in Brassica juncea(cv Canadian Black) and B napus (cv Drakkar) Unstressed plantsof the two species had similar leaf water potentials (w), solute(s) and turgor potentials (p) Values of relative water content(RWC) and the slope of the linear relationship between p andRWC (p/RWC) were greater in B napus than in B juncea Statistical correlations of pooled data for the watered andstressed treatments differentiated the relationships among RWC,w and its components in the two species The major statisticaldifference was that p/RWC was related to RWC in B napus andto w and s in B juncea A decline in p/RWC with decreasing sin B juncea may be a mechanism for maintaining p at low soilwater potentials through maintenance of more elastic cell walls. Brassica juncea, Brassica napus, osmotic adjustment, tissue elasticity, water relations  相似文献   

7.
An error occurs in the calibration of xylem pressure potential() against leaf-water potential () when the calibration is madeusing plant material in which the water stress has been inducedartificially after excision. The impostion of water stress afterexcision affects the determination more than it affects , consequentlythe relationship between these two indices of water stress isaltered. Care should be exercised to ensure that identical proceduresare adopted during . calibrations and during susbsequent fieldmeasurements of with the pressure-chamber apparatus.  相似文献   

8.
In recent years alternative ways have been proposed to transformmeasurements of leaf water potential, , and relative water content,R*, in order to derive values of osmotic pressure at full turgidityin leaves and shoots, o(when 0). Two types of transformationsare usually considered: 1/ versus R* and versus 1/R*, and linearregression is used to fit the data in the region where turgoris thought to be zero. It appears that when o is estimated bylinear extrapolation of 1/Psi; versus R* then apoplastic watermight not influence the accuracy of o but when the versus \/R*transformation is used apoplastic water causes an underestimateof o. We examine the accuracy of the estimate of o obtainedfrom the two transformations when there are random errors in, systematic errors in , and when the osmotic solutions arenon-ideal. The 1/ versus R* transformation generally producesthe best estimate of 0 by linear extrapolation.  相似文献   

9.
The notochord can play an important mechanical role in shapechanges during early morphogenesis of vertebrates. For example,osmotic inflation of notochords elongates and straightens theaxis of frog early tail-bud embryos. In Xenopus laevis, thesheath of cross-helically arranged fibers around the notochordlimits the shape changes it undergoes when inflating, causingthe notochord to stiffen and straighten (Adams et al., 1990;Koehl et al., 1990). We used physical models of stage 24 X.laevis notochords to explore the mechanical consequences ofdifferent arrangements of the sheath fibers on the behaviorof such curved hydraulic cylinders. All the models straightenedupon inflation regardless of initial fiber angle ( = angle ofthe fibers to long axis of the cylinder). Notochord models with > 54° lengthened and narrowed as they straightened;although they could push, the forces they exerted were limitedby their tendency to buckle, which increased the greater the. In contrast, models with < 54° shortened and widenedas they straightened and showed pronounced increases in flexuralstiffness. The mean of X. laevis early tail-bud notochordsis 54°, a fiber angle that permits an increase in the end-to-enddistance of the model (along the anterior-posterior axis ofthe embryo) as it straightens and pushes when pressurized, butthat is less prone to Euler and local buckling than are modelswith higher 's. Nonetheless, a of 54° in notochords maysimply be the result of osmotic swelling.  相似文献   

10.
KASSAM  A. H. 《Annals of botany》1975,39(2):265-271
Wilting of leaves of Vicia faba L., which occurs when the pressurepotential (p) is zero, and the leaf-water potential () at wiltingboth depend entirely upon the solute potential at incipientplasmolysis (so) and not on soil-water status. Wilting in V.faba is acropetal; this is consistent with the hypothesis thatthere is a gradient of decreasing so up the plant and that wateris transferred from the lower to the upper leaves, hasteningthe overall water loss from the lower leaves to the point whenp is zero. The gradient in so up the plant is of the order of3–8 bar. It is proposed that wilting when p>0 (i.e. > so) shouldbe ‘apparent wilting’ and that when p0 (i.e. so),‘true wilting’.  相似文献   

11.
The effects of -hydroxy-2-pyridinemethanesulphonic acid (-HPMS)upon net photosynthesis (Pn, the CO2 compensation point (),post-lower illumination burst of CO2 (PLIB) and post-lower temperatureburst of CO2 (PLTB) in detached rye (Secale cereale L.) leaveswere investigated. At low concentrations ( 0.5 mol m–3),-HPMS initially stimulated Pn and decreased the magnitude ofboth PLIB and PLTB. The decreased at all concentrations of-HPMS (0.05–5.0 mol m–3. The effects of -HPMS onPn and were time-dependent and, after a few minutes, the Pnwas inhibited while values increased considerably. At a higherconcentration (5.0 mol m –3), the transient effects of-HPMS were shorter () or not observed at all (Pn. Both PLIBand PLTB, when expressed in relation to Pn, increased at higherlevels of this compound. Similar data with respect to the effectsof -HPMS on PLIB and PLTB were found for leaves of dandelion(Taraxacum officinale L.). The results suggest that -HPMS may stimulate Pn by inhibitingphotorespiration, as originally suggested by Zelitch (1966),but only at low concentrations and over a short time span. Thedecrease of PLIB and PLTB values at low -HPMS levels is consistentwith these processes being a residual activity of the glycolatepathway. Key words: CO2 compensation point, -hydroxy-2-pyridinemethanesulphonic acid, photorespiration, photosynthesis  相似文献   

12.
An equation is derived expressing average turgor pressure ofa leaf (p) as a function of relative water content (RWC). Basedon this derivation, the relationships of the bulk elastic modulus(v) and both RWC and p, are formulated and discussed. The bulkelastic modulus (v) becomes zero for p = 0, that is at the turgorloss point for the leaf. At full water saturation the valueof ev is proportional to the water saturation turgor potentialp(max). The factor relating P and v (structure coefficient ,Burstrom, Uhrstr?m and Olausson, 1970) changes only very littlefor values of p, which are not too close to zero. An exampleis given for the calculation from experimental data of the turgorpressure function, the structure coefficient function, and thev function. Key words: Cell wall, Turgor pressure, Bulk elastic modulus  相似文献   

13.
Various Cucurbita seed globulins showed patterns similar toone another on SDS-gel electrophoresis, and ß bandsfor unreduced globulins and , ', and ' bands for reduced ones.On gel electrophoresis in 6 M urea, reduced globulin gave twoacidic and two basic bands. These corresponded to and ' chainsand 1 and 2 chains, respectively, identified by two-dimensionalurea-SDS gel electrophoresis. The compositions of the and ßsubunits were proposed. (Received September 8, 1977; )  相似文献   

14.
The conformation of the heptasaccharide Man-1,6-(Man-1,3)(Xyl-ß1,2)-Man-ß,4-GlcNAc2-ß1,4-(L-Fuc-1,3)-GlcNAc1,the carbohydrate moiety of Erythrina corallodendron lectin (EcorL),the hexasaccharide Man-1,6-(Man-1,3) (GlcNAc-ß1,4)-Man-ß1,4-GlcNAc-ß1,4-GlcNAcand their disaccharide fragments have been studied by moleculardynamics (MD) simulations for 1000 ps with different initialconformations. In the isolated heptasaccharide, the most frequentlyaccessed conformation during MD has a value of 180° aroundMan-1,6-Man linkage. This conformation is stabilized by theformation of a hydrogen bond between the carbonyl oxygen ofGlcNAc2 with the O3/O4 hydroxyls of the 1,6-linked mannose residue.The conformation of the heptasaccharide found in the crystalstructure of the EcorL-lactose complex (Shaanan et al., Science,254, 862, 1991), that has a value of 76° around Man-1,6-Manlinkage, is accessed, although less frequently, during MD ofthe isolated oligosaccharide. The ,, = 58°,–134°,–60°conformation around Man-1,6-Man fragment observed in the crystalstructure of the Lathyrus ochnrs lectin complexed with a biantennaryoctasaccharide (Table I in Homans,S.W., Glycobiology, 3, 551,1993) has also been accessed in the present MD simulations.These values for the 1,6-linkage, which are observed in theprotein-carbohydrate crystal structures and are accessed inthe MD simulations, though occasionally, have not been predictedfrom NMR studies. Furthermore, these different values of leadto significantly different orientations of the 1,6-arm for thesame value of . This contrasts with the earlier predictionsthat only different values of can bring about significant changesin the orientation of the 1,6-arm. The MD simulations also showthat the effects of bisecting GlcNAc or ß1,2-xyloseare very similar on the 1,3-arm and slightly different on the1,6-arm. bisecting GlcNAc carbohydrates glycoprotein lectinsaccharide complex  相似文献   

15.
The euryhaline charophyte Lamprothamnium papulosum (Wallr.)J. Gr. was adapted to media with decreasing salinities rangingfrom 550 to 0 mosmol kg–1. Vegetative plants grown inmedia with osmotic pressures (0) in the range of 550 to 130mosmol kg–1 maintained a constant turgor pressure () at309 + 7 mosmol kg–1. The ions K+, Na+ and Cl–, werethe predominant solutes in the vacuole. Changes in their concentrationsaccount for the variation in internal osmotic pressure (1) with,0. The divalent ions Mg2+, Ca2+ and were also present in significant amounts, but their concentrationsdid not alter with changes in, 0. In cells subjected to hypo-osmotic shock the regulation of was incomplete. The turgor pressure increased from 302 to 383mosmol kg–1. The first rapid response to the sudden decreasein 0 was a loss of K+ and Cl. In contrast to the decreasein ionic concentrations an accumulation of sucrose occurredwhich could account for the increase of . The increase in sucroseconcentration started 24 to 48 h after the downshock and reachedits highest value after 3 to 4 weeks. The sucrose concentrationin the vacuole was up to 320 mol m–3. During this timethe ionic content continued to decrease but did not counterbalancethe sucrose concentration sufficiently to regain the original. High sucrose levels accompanied by an enhanced were also observedduring the period of fructification (sexual reproduction: formationof antheridia and oogonia) in Lamprothamnium kept under conditionsof constant salinity. It is concluded that high sucrose content and elevated arecharacteristic of sexual reproduction in this charophyte. Lamprothamniumis able to tolerate different during various developmentalstages (e.g. vegetative and reproductive phases). Key words: Lamprothamnium papulosum, sucrose, turgor pressure  相似文献   

16.
A series of hydrophobic mannosides were synthesized and testedfor their ability to act as acceptor substrates for mannosyltransferasesin a Trypanosoma brucei cell-free system. The thiooctyl -mannosidesand octyl -mannosides all accepted single mannose residues in-linkage, as judged by thin layer chromatography of the productsbefore and after jack bean -mannosidase digestion. The mannosylationreactions were inhibited by amphomycin, suggesting that theimmediate donor was dolicholphosphate-mannose (Dol-P-Man) inall cases. The transferred -mannose residues were shown to beboth 1-2 and 1-6 linked by Aspergillus phoenicis -mannosidaseand acetolysis treatments, respectively. These data suggestthat the compounds can act as acceptor substrates for the Dol-P-Mandependent 1-2 and 1-6 mannosyltransferases of the GPI biosyntheticpathway and/or the dolichol-cycle of protein N-glycosylation.One of the compounds, Man1-6Man1-O-(CH2)7CH3, inhibited endogenousGPI biosynthesis in the cell-free system, suggesting that itcould be a substrate for the trypanosome Dol-P-Man:Man2GlcN-Pl1-2 mannosyltransferase. dolichol glycosylphosphatidylinositol mannosyltransferase trypanosome  相似文献   

17.
Subunits (, ß, ) and mixtures of subunits ( ß, , ß , ß ) were isolated without denaturationfrom a chloroform extract of chloroplast coupling factor 1 (CF1)from maize (Zea mays var. Ushiku 5-4) and from spinach by fastprotein liquid chromatography (FPLC), on an anion-exchange columnof Mono-Q in the presence of n-octylglucoside (OG) and on achromatofocusing column of Mono-P. The ß -subunitcomplex (CF1 ß ) was the minimum unit required forATPase activity, as was confirmed by the reconstituted complexof ß and subunits. An subunit isolated from maizeinhibited the ATPase activity of CF1 ß from bothmaize and spinach. CF1 ß was found to contain anOG-dependent Mg2+-ATPase. The ATPase activity of CF1 ß required divalent cations, such as Mg2+ or Mn2+, for its expressionin the presence of OG; its optimum pH was 8.0 and it was markedlyinhibited by NaN3. The enzyme hydrolyzed ATP in prefernece toGTP but not CTP, UTP, ADP, AMP or pNPP. Lineweaver-Burk plotsof its activity were curvilinear in the range of 0.6–0.7mM ATP.Mg2+. 1Present address: Department of Biology, School of Education,Waseda University, Shinjuku-ku, Tokyo, 160 Japan. (Received February 15, 1989; Accepted April 20, 1989)  相似文献   

18.
Water-relations parameters were measured on sections of secondaryphloem from red oak (Quercus borealis michx. f.) and white ash(Fraxinus americana var. biltmoreana [Beadle] J. Wright) usinga linear displacement transducer. Changes in tissue thicknessin response to changes in the osmotic pressure of the bathingsolution were used to calculate the volumetric elastic modulusplus osmotic pressure (v + ) of the tissue, and an applied forcemethod was used to estimate the time constant for water equilibration(T). The hydraulic conductivity of the cell membranes (Lp) wascalculated utilizing v + and r values. The time-dependent behaviour of the tissue was much more complexthan originally expected. A correction for a time-dependentprocess that we call ‘drift’ was required to obtainnumbers for v + . Furthermore, v + was calculated on two assumptionsin order to relate changes in tissue dimensions to sieve elementparameters. In the first case, a lower limit for v + of thesieve elements was determined by attributing all changes intissue dimensions to these cells. For red oak the average v+ on this assumption is 72 bars. Assuming that all cell typeswere equally responsible for the changes in tissue dimensionsresulted in an v + value of 192 bars for oak. If v + and rare the same for all cells in the tissue, Lp for the sieve elementsof oak is 9.6 x 10–8 cm s–1 bar–1. Exudationfrom the sieve elements of white ash during excision of thephloem led to artificially high values of v + for that species. Quercus borealis michx. f., Fraxinus americana var, biltmoreana (Beadle) J. Wright, red oak, white ash, water relations, phloem, volumetric elastic modulus, membrane hydraulic conductivity  相似文献   

19.
The 1,2-fucosyltransferase family (1,2FT) is the largest familyof glycosyltransferases in the genome of the free-living nematodeCaenorhabditis elegans, and early evidence suggests that eachmember may have a unique activity. Here we describe a C. elegansgene (designated CE2FT-2) encoding an 1,2FT that has the potentialto generate the sequence Fuc1-2Galβ1-3GalNAc-R, which isthe H-type 3 blood group structure. The CE2FT-2 cDNA encodesa putative transmembrane protein that shows 42% amino acid identityto a previously cloned C. elegans 1,2FT (termed CE2FT-1), buthas a very low identity (16–20%) to 1,2FT sequences inhumans, rabbits, and mice. A recombinant form of CE2FT-2 expressedin human 293T cells has a high 1,2FT activity toward Galβ1-3GalNAc-O-pNP,but unexpectedly, the enzyme is inactive toward the acceptorGalβ-O-phenyl. Thus, CE2FT-2 differs from all other 1,2FTspreviously described from animals that all utilize Galβ-O-phenyl.CE2FT-2 is expressed at all stages of worm development, butremarkably, promoter analysis of the CE2FT-2 gene using greenfluorescent protein reporter constructs indicates that the CE2FT-2is expressed exclusively in pharyngeal cells of the worm fromembryo to an adult stage. Because pharyngeal cells are knownto secrete their glycoconjugates to the nematode surface, theseresults may indicate that products of CE2FT-2 contribute tointeractions of the nematode with its environment or are usedas ligands for bacterial attachment. These findings, along withthose on other 1,2FTs in C. elegans, suggest that each 1,2FTin this organism may have a unique acceptor specificity, expressionpattern, and biological function.  相似文献   

20.
The pressure-volume technique was employed to compare waterrelations and moisture stress-induced osmotic adjustment ofPeriwinkle (Catharanthus roseus) cv. Pink (PC), Oscillatus (REC)and White (WC). Leaf water potential (w), osmotic potential(s), turgor potential (p), bulk modulus of elasticity (), boundwater (RWCw) and leaf hydration (H), were estimated by exposingthe plants to a drying cycle during which well watered plantswere dehydrated to zero turgor, and then irrigated. Osmoticadjustment (w 100) was calculated by comparing a at full hydration(a 100) in stressed plants after recovery, with a 100 in controlplants. Values of 2100 were 0.76, 0.33 and 0.11 MPa in cv. PC,REC and WC, respectively. Maintenance of p at lower 3 and relativeleaf water content (RWC) in prestressed PC was attributableto a higher alkaloid content and greater leaf cell wall elasticity.RWCW was plotted against p to determine its contribution tohydration maintenance at lower p. Genotype PC showed greaterRWCw at lower p compared with REC and WC. The present studyhas demonstrated that there are cultivar differences in alkaloidaccumulation and water relations in acclimated plants and thatthe relative ranking for drought resistance within periwinkleappeared to correspond with the changes in osmotic properties. Medicinal plant, drought resistance, alkaloids, periwinkle [Catharanthus roseus (L.) G. Don]  相似文献   

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