Genetic mapping of resistance factors to Phytophthora palmivora in cocoa.

Phytophthora palmivora causes pod rot, a serious disease on cocoa widespread throughout the producing regions. In order to ascertain the genetic determination of cocoa resistance to P. palmivora, a study was carried out on two progenies derived from crosses between a heterozygous, moderately resistant Forastero clone, T60/887, and two closely related and highly susceptible Forastero clones, one completely homozygous, IFC2, and one partially heterozygous, IFC5. The cumulative size of both progenies was 112 individuals. Plants were subjected to natural and artificial inoculation of P. palmivora in C te d'Ivoire. The genetic maps of T60/887 and of IFC5 were constructed using amplified fragment length polymorphism (AFLP) markers and microsatellites. The map of T60/887 comprised 198 markers assembled in 11 linkage groups and representing a total length of 793 cM. The map of IFC5 comprised 55 AFLP markers that were assembled into six linkage groups for a total length of 244 cM. Ratio of rotten over total number of fruit under natural infection was measured for each tree over two harvests. Artificial inoculations were performed on leaves and pods. These tests were weakly correlated with the pod rot rate in the field. Five quantitative trait loci (QTLs) of resistance were detected for T60/887 but none were common between the three traits measured. Stability and reliability of the experimental procedures are discussed and revealed the difficult use of these artificial tests on adult trees for a good prediction of field resistance.     

A newly identified locus controls complete resistance to Microcyclus ulei in the Fx2784 rubber clone

Using cultivars which are genetically resistant to South American leaf blight (SALB) caused by the fungus Microcyclus ulei is the only way to plant rubber trees in disease-affected areas. Numerous field observations led to the hypothesis that the resistance of the cultivar Fx2784 to SALB is likely to be monogenic. In this study, we investigated this hypothesis by examining the distribution of the trait in a cross between the resistant cultivar and a susceptible one. The individuals resulting from this cross were planted in field trials in French Guiana and Brazil. The resistance of all the trees was assessed by field observations. Bulk segregant analysis (BSA) using microsatellite markers was performed in French Guiana to determine which markers were genetically linked to resistance, and the results were validated by field observations in Brazil. In both locations, a 1:1 segregation of the resistance trait was observed, thus reinforcing the monogenic hypothesis. BSA showed tight linkage between resistance and the microsatellite markers located in linkage group 2 in the Hevea genome and enabled to pinpoint the resistance locus. The location was confirmed by observations on the trees planted in Brazil. This result should facilitate the use of Fx2784 resistance in future breeding programs for SALB resistance. This is the third major locus conferring resistance to SALB identified in rubber tree (Hevea spp.). These three loci are genetically independent, a favorable situation for genetic improvement of SALB resistance.     

Variation Within and Between Phytophthora Species from Rubber and Citrus Trees in China, Determined by Polymerase Chain Reaction Using RAPDs

Variation among 39 isolates of Phytophthora of six morphological species (P. citrophthora. P. parasitka, P. capsici, P. palmivora and P. meadii. from rubber and citrus trees, and P. colocasiae from taro) was studied using random amplified polymorphic DNA (RAPD) analysis. Ten randomly-chosen 10-mer primers were used. Generally, the banding patterns were similar within species and different between species, but no one primer was able to distinguish all six species from one another. Cluster analysis on pooled data from all the primers gave six groups of isolates corresponding to the six morphological species. The group corresponding to P. citrophthora was divided further into subgroups that were related to host species and geographical location. This work confirmed the existing morphological classification of Phytophthora isolates from rubber and citrus trees in tropical China and showed the validity of using RAPDs to study the taxonomy of Phytophthora.     

Mapping QTL for yield components, vigor, and resistance to Phytophthora palmivora in Theobroma cacao L.

Quantitative trait loci (QTL) mapping for agronomic traits was carried out in cocoa (Theobroma cacao L.). Regions of the genome involved in yield, vigor, and resistance to Phytophthora palmivora were identified. Three heterozygous clones, one upper Amazon Forastero (IMC78) and two Trinitario (DR1 and S52), were crossed with the same male parent, a lower Amazon Forastero (Catongo), known to be highly homozygous. Observations were made on progeny over nine consecutive years. One to three QTL related to yield were detected in each of the three populations, located on chromosomes 1, 2, 4, 5, 9, and 10. They explained between 8.1 and 19.3% of the phenotypic variation and showed various levels of repeatability. In IMC78, the QTL detected on chromosome 5 was the most repeatable over years. The QTL for the average individual pod weight on chromosome 4 was the most significant with an LOD of 17.3 and an R2 of 43.7. QTL related to these traits were identified in the same region of the genome in clones of different genetic groups. This suggests that molecular markers can be used to improve cocoa varieties.     

A method of inoculating young cocoa plants with basidiospores of Oncobasidium theobromae

A method is described for collecting basidiospores of Oncobasidium theobromae onto agar containing 35% w/v sucrose and preparing infective spore suspensions. When cocoa seedlings and clonal cuttings were inoculated, large differences in percentage infection were demonstrated between seedling progenies of resistant and susceptible trees. Resistant clonal cuttings were generally difficult to infect. The value of the technique for resistance screening is discussed.     

Electrophoretic protein patterns of three species ofPhytophthora associated with black pod disease of cocoa (Theobroma cacao L.)

When electrophoretic profiles of native proteins from vegetative mycelia ofPhytophthora palmivora, Phytophthora capsici and Phytophthora citrophthora causing black pod disease of cocoa in India were compared on a single Polyacrylamide gel, the isolates of same species were readily distinguished both qualitatively by visual similarity in banding patterns and quantitatively by calculating similarity coefficients. Similarity coefficients were generally much higher between isolates within a species than between isolates of different species. The dendrograms obtained after unweighted pair grouping with arithmetic averaging cluster analysis, revealed that all the isolates ofPhytophthora capsici were highly homogenous and formed a single cluster. The isolates ofPhytophthora citrophthora were resolved into two electrophoretic types which were clustered into two distinct sub groups.Phytophthora palmivora formed a separate group. Thus, the results reveal that polyacrylamide gel electrophoresis can be used successfully in distinguishing species and sub groups within a species ofPhytophthora encountered on cocoa. CPCRl contribution No. 914.     

METHODS OF CONTROLLING BLACK-POD DISEASE (CAUSED BY PHYTOPHTHORA PALMIVORA) OF THEOBROMA CACAO IN NIGERIA

Supplementary methods of controlling black-pod disease ( Phytophthora palmivora ) of cocoa in Nigeria are considered, because fungicide application is not always economic.
There is no evidence that resistance occurs within the local population of Amelonado-type trees.
Although the percentage of diseased pods was greater with trees closely spaced (5 times 5 ft. to 8 times 8 ft.), than with widely spaced trees (10 times 10 ft. to 15 times 15 ft.), the closer spacings often gave more healthy pods per acre.
Loss of pods from black-pod was decreased when trees were inspected frequently (alternate days) and infected pods were removed when showing the earliest symptoms. However, this procedure may not be economic, except when potential yields are relatively small (fewer than twelve pods per tree).
Satisfactory control of black-pod was obtained with copper fungicides, applied with either hand-sprayers or a power-sprayer. The monetary return depends on yield level, rather than on disease incidence or on spraying costs. It is recommended that spraying should be practised when the potential yield is twelve or more pods per tree.     

Creation of BAC genomic resources for cocoa (<Emphasis Type="Italic">Theobroma cacao</Emphasis> L.) for physical mapping of RGA containing BAC clones

We have constructed and validated the first cocoa (Theobroma cacao L.) BAC library, with the aim of developing molecular resources to study the structure and evolution of the genome of this perennial crop. This library contains 36,864 clones with an average insert size of 120 kb, representing approximately ten haploid genome equivalents. It was constructed from the genotype Scavina-6 (Sca-6), a Forastero clone highly resistant to cocoa pathogens and a parent of existing mapping populations. Validation of the BAC library was carried out with a set of 13 genetically-anchored single copy and one duplicated markers. An average of nine BAC clones per probe was identified, giving an initial experimental estimation of the genome coverage represented in the library. Screening of the library with a set of resistance gene analogues (RGAs), previously mapped in cocoa and co-localizing with QTL for resistance to Phytophthora traits, confirmed at the physical level the tight clustering of RGAs in the cocoa genome and provided the first insights into the relationships between genetic and physical distances in the cocoa genome. This library represents an available BAC resource for structural genomic studies or map-based cloning of genes corresponding to important QTLs for agronomic traits such as resistance genes to major cocoa pathogens like Phytophthora spp (palmivora and megakarya), Crinipellis perniciosa and Moniliophthora roreri.Communicated by J.W. Snape     

Cocoa canker caused by Phytophthora palmivora

Canker disease of Theobroma cacao L. caused by Phytophthora palmivora (Butler) Butler gives rise to serious damage in Fiji and is common in the S.W. Pacific area. Fusarium decemcellulareBiick (imperfect stage of Calonectria rigidiuscula (Berk. & Br.) Sacc.) was constantly associated with P. palmivora in disorders of cocoa but was not found to be a primary pathogen. Most Amelonado cocoa trees were resistant to canker but there were differences in the reactions of other Forastero and of Trinitario types. The F₁ generation of a local Trinitario selection, itself resistant, showed segregation resulting in a proportion of very susceptible plants. Isolates of P. palmivora from black pod, canker and green twigs were equally pathogenic, both to pods and seedling stems. Sporangial dimensions, particularly the length/breadth ratio, differed from those reported elsewhere. It is uncertain whether the reason that cocoa canker is more serious in some countries than others is because of differences in the pathogenicity of P. palmivora strains to bark or the genetic differences of the cocoa grown.     

Deltamethrin Resistance Mechanisms in Aedes aegypti Populations from Three French Overseas Territories Worldwide

Background

Aedes aegypti is a cosmopolite mosquito, vector of arboviruses. The worldwide studies of its insecticide resistance have demonstrated a strong loss of susceptibility to pyrethroids, the major class of insecticide used for vector control. French overseas territories such as French Guiana (South America), Guadeloupe islands (Lesser Antilles) as well as New Caledonia (Pacific Ocean), have encountered such resistance.

Methodology/Principal Findings

We initiated a research program on the pyrethroid resistance in French Guiana, Guadeloupe and New Caledonia. Aedes aegypti populations were tested for their deltamethrin resistance level then screened by an improved microarray developed to specifically study metabolic resistance mechanisms. Cytochrome P450 genes were implicated in conferring resistance. CYP6BB2, CYP6M11, CYP6N12, CYP9J9, CYP9J10 and CCE3 genes were upregulated in the resistant populations and were common to other populations at a regional scale. The implication of these genes in resistance phenomenon is therefore strongly suggested. Other genes from detoxification pathways were also differentially regulated. Screening for target site mutations on the voltage-gated sodium channel gene demonstrated the presence of I1016 and C1534.

Conclusion /significance

This study highlighted the presence of a common set of differentially up-regulated detoxifying genes, mainly cytochrome P450 genes in all three populations. GUA and GUY populations shared a higher number of those genes compared to CAL. Two kdr mutations well known to be associated to pyrethroid resistance were also detected in those two populations but not in CAL. Different selective pressures and genetic backgrounds can explain such differences. These results are also compared with those obtained from other parts of the world and are discussed in the context of integrative research on vector competence.     

Effect of Fruiting Traits on the Field Resistance of Cocoa (Theobroma cacao L.) Clones to Phytophthora megakarya

The effects of some traits of field resistance (precocity and duration of the fruiting cycle, age of diseased fruit and vertical pod distribution on the tree) to Phytophthora megakarya of four known cocoa clones were studied in an on‐station clonal plot planted in 1982 in the south‐west of Cameroon. Weekly observations of fruit set and development, black pod and rainfall were carried out during three growing seasons (1999, 2000 and 2001). The study confirmed the previous field and laboratory assessments of resistance of these clones based on the mean percentages of rotten pods obtained annually. The present study has permitted the identification of fruit aged 2–3 months as the highly susceptible stage of development in the most susceptible clone. In addition, precocity and pod cycle duration varied significantly among the clones. The earlier the pod cycle began, the more susceptible was the clone: the most resistant clone started flowering 1 month after the most susceptible clone and therefore escaped the peak of disease severity. Rainfall intensity greatly modified the incidence of the disease in 2001, with high yield losses occurring in all four clones (70–93%), but their ranking remained stable over the 3 years. The spatial distribution of pods on the trees showed that pods on the trunk were more likely to become diseased than those on the branches, but its effect as a clone resistance component is variable among the four clones; the resistant clone producing more pods on the trunk and the susceptible clone more in the canopy.     

The elicitin secreted by Phytophthora palmivora, a rubber tree pathogen

Palmivorein, a new member of the elicitin family, was purified from the culture filtrate of Phytophthora palmivora isolated from the rubber tree, Hevea brasiliensis. The elicitin was obtained by ammonium sulfate precipitation and further purified using ion-exchange and gel filtration. The molecular weight, isoelectric point, amino acid composition and N-terminal sequences of this molecule are reported and compared to other known elicitins. Palmivorein, as determined by SDS-PAGE, is a small protein of M(r) ca. 10,000. It is classified as an alpha-elicitin according to its acidic pI and the valine residue at position 13. Like other elicitins, the P. palmivora elicitin causes tissue necrosis on tested tobacco leaves. It also causes severe wilting and necrosis of Hevea tissue, and leaves of the susceptible rubber clone (with respect to P. palmivora) are much more sensitive to this elicitin than those that are resistant.     

Examination of some morphologically unusual cultures of Phytophthora species using a mitochondrial DNA miniprep technique and a standardised sporangium caducity assessment

Using the mitochondrial DNA miniprep technique, the identity of sixteen morphologically unusual cultures allocated to Phytophthora nicotianae, Phytophthora mexicana or Phytophthora porri was determined by comparison with a library of mtDNA band patterns obtained from reference cultures. Seven cultures were identified as Phytophthora nicotianae (including those assigned to Phytophthora mexicana and Phytophthora porri), six as strains of Phytophthora palmivora with small, ovoid, weakly caducous sporangia, and one as Phytophthora citrophthora. Some cultures of P. nicotianae had a low percentage of caducous sporangia. Percentage sporangium caducity, but not sporangium L : B ratio, is considered a useful taxonomic criterion for separating species morphologically similar to Phytophthora nicotianae. One culture from tobacco in New Zealand had a highly unusual morphology and a unique DNA band pattern, but was not identifiable. One culture from Acacia mearnsii in South Africa had a unique DNA band pattern which was identical to that of an isolate from Annona squamosa from Australia previously identified as Phytophthora palmivora, the precise identity of which is still unclear. The identity of most isolates from diseased durian was found to be Phytophthora palmivora, confirming its role as the main pathogen, but P. nicotianae was also identified from this host. This revised version was published online in August 2006 with corrections to the Cover Date.     

福建、浙江、江苏、上海疫霉种的研究

1985—1986年,从福建漳州,浙江杭州,上海,江苏南京,苏州,扬州,常州等地采集100多种植物进行分离,在雪松(Cedrus deodara),倒挂仙人鞭(Cereus flagelliformis),冬青卫茅(Euonymus japonieus),构树(Broussonetia papyrifera),蓖麻(Ricinus communis),柑桔(Citrus reticulata),带叶兜兰(Paphiopedilum hirsutissimum),芋(Colocasia esculenta),鳄梨(Persea americana),山茶(Camellia sp.),珊瑚樱(Solanum pseudo-capsicum),百合(Lilium brownii var.viridulum),蔓常春花(Vinca major),西瓜(Citrullus lanatus)等14种寄主植物上分离到51个疫霉菌株,鉴定为9个种:烟草疫霉(=寄生疫霉)Phytophthora nicotianae B.de Haan(=P.parasitica Dast.),掘氏疫霉P.drechsleri Tucker,樟疫霉 P.ciunamomi Rands,棕榈疫霉P.palmivora(Butl.)Butl.,柑桔褐腐疫霉P.citrophthora(R.et E.Smith) Leon.,苎麻疫霉P.bochmeriae Saw.,蜜色疫霉P.meadii McRae,簇囊疫霉P.botryosa Chee,隐地疫霉P.cryptogea Pethyb.et Laff.。其中,烟草疫霉,掘氏疫霉,樟疫霉出现频率较高,分布较广,初步认为是上述地区植物疫病的主要病原菌。簇囊疫霉、蜜色疫霉是国内新记录。     

Phytophthora Canker Resistance in Cacao: Role of Peroxidase, Polyphenoloxidase and Phenylalanine Ammonia-lyase

Peroxidase (PO) Polyphenoloxidase (PPO) and Phenylalanine ammonia-lyase (PAL) activities in stem extracts of six cacao clones (IMC 67, ICS 1, TSH 1188, P 18, SCA 6 and TSH 1076) were measured spectrophotometrically in (i) healthy tissues; (ii) tissues wounded with a 3-mm diameter cork borer and (iii) tissues inoculated with the canker pathogen Phytophthora palmivora. The results indicated significantly high (P < 0.05) activities of the three enzymes in extracts obtained from inoculated and wounded as opposed to those from healthy tissues. The activities of these enzymes were significantly higher in the extracts of IMC 67, low in TSH 1076, SCA 6 and P 18 and intermediate in TSH 1188 and ICS J. There was no significant difference in enzyme activities among the genotypes TSH 1076. SCA 6 and P 18 and also between ICS 1 and TSH 1188. Starch gel electrophoresis of PO indicated differences in banding pattern/band-intensity amongst IMC 67, ICS 1 and SCA 6 and also between inoculated and uninoculated stems. These results are discussed in relation to lignin and phenol metabolism associated with plant resistance to pathogen attack.     

中国橡胶树疫霉种的研究*

疫病是我国植胶区的主要病害。近年来,作者从云南西双版纳和广东海南岛的橡胶树和胶园土共分离出57株疫霉菌种。通过分类研究,共鉴定出4个种:恶疫霉 Phytophthoracactorum(Leb.＆ Cohn)Schroeter,辣椒疫霉 P.capsici Leoman,柑桔褐腐疫霉 P.citrophthora(Sm.＆ Sm.)Leonian,和棕榈疫霉 P.palmivora(Butl.)Butler。其中辣椒疫霉是首次在橡胶树上发现。我国橡胶树疫霉的种群结构与东南亚和南亚的有所不同,除棕榈疫霉外,其余3种在东南亚和南亚均未发现。而东南亚常见种:簇囊疫霉(P.botryosa)、橡胶疫霉(P.heveae)和蜜色疫霉(P.meadii),在我国却迄今尚未发现或有待证实。以前报道分离自胶园土壤中的芋疫霉(P.colocasiae),可能系柑桔褐腐疫霉之误。绝大多数分离物经配对培养均可产生性器官:辣椒疫霉的A~1交配型和A~2交配型大致相等;柑桔褐腐疫霉和棕榈疫霉的A~2交配型则明显多于A~1交配型。     

Identification of QTLs related to cocoa resistance to three species of<Emphasis Type="Italic"> Phytophthora</Emphasis>

This study aimed to compare the genetic control of cacao resistance to three species of Phytophthora: Phytophthora palmivora, Phytophthora megakarya and Phytophthora capsici. The study was conducted on 151 hybrid progenies created in Côte d'Ivoire and grown in a green-house in Montpellier. Phytophthora resistance was screened by leaf-test inoculation with two different strains per species. Selection of the best individuals for resistance to P. palmivora at a 10% selection rate, would lead to a genetic progress of 47% in the disease evaluation for this species and a genetic progress of 42% and 21% for the two other species. A genetic map with a total length of 682 cM was built with 213 markers, 190 AFLPs and 23 microsatellites. QTLs were identified using composite interval mapping. QTLs were found located in six genomic regions. One of these was detected with five strains belonging to the three Phytophthora species. Two other regions were detected with two or three strains of two different species. Three additional QTLs were detected for only one species of Phytophthora. Each QTL explained between 8 to 12% of the phenotypic variation. For each strain, between 11.5% to 27.5% of the total phenotypic variation could be explained by the QTLs identified. The identification of multiple QTLs involved in resistance to Phytophthora offers the possibility to improve durability of resistance in cocoa by a possible cumulation of many different resistance genes located in different chromosome regions using marker-aided selection.Communicated by H.F. Linskens     

Two new species of Paramachaerium (Leguminosae) and a brief résumé of the genus

Paramachaerium Ducke, a genus of neotropical trees, has been known hitherto from three species,P. schomburgkii (Guyana and Brazil),P. ormosioides (French Guiana and Brazil), andP. gruberi (Panamá). Two new species are herein described,P. krukovii (western Brazil) andP. schunkei (Peru).