Quantitative estimation of 3'5' cyclic AMP phosphodiesterase using anion exchange resin in a batch process.

An improved method for the preparation of adenosine 3′-phosphate 5′-phosphosulfate (PAPS) is described which includes: enzymes from Chlorella for PAPS synthesis; conversion of ATP to AMP after PAPS formation with hexokinase (EC 2.7.1.1) and myokinase (EC 2.7.4.3); and separation of PAPS on DEAE-Sephadex using triethylammonium bicarbonate buffers. Any specific activity can be obtained by using appropriate concentrations of carrier-free ³⁵S and nonradioactive sulfate in the incubations. Between 300 and 2000 μmol of PAPS per batch can be obtained depending on the scale of the preparation. The PAPS is over 95% pure radiochemically and shows only one ultraviolet-absorbing spot on paper electrophoresis at pH 5.8. Adenosine 5′-phosphosulfate (APS) is prepared by incubating PAPS with a 3′-nucleotidase (EC 3.1.3.6) from rye grass. Quantitative conversion of PAPS to APS is obtained, and the APS is purified by column chromatography in the same manner as for PAPS. The APS obtained is better than 95% pure radiochemically and shows only one uv-absorbing spot on paper electrophoresis at pH 5.8.     

A nucleotide with the properties of adenosine 5′ phosphoramidate from Chlorella cells

We have extracted and purified a nucleotide from cells of $\text{Chlorella}\text{,}\text{pyrenoidose}$ Chick which shares the following properties with adenosine 5′ phosphoramidate; electrophoretic mobility in sodium bicarbonate and in sodium borate buffer (pH 8.0); retention time on high performance liquid chromatography; ultraviolet absorption spectrum at pH 1–2 and 7–9; a yield of one mole each of adenine, ribose, total phosphate and ammonia released at low pH; and formation of adenosine 5′ monophosphate on acidification or treatment with 3′:5′-cyclic-nucleotide phosphodiesterase (EC3.1.4.17). Although formation of APA from its precursor adenosine 5′ phosphosulfate during extraction and purification is not expected this appears to be excluded by the use of low temperature throughout purification and the finding that [¹⁴C] APS added before extraction does not significantly label the adenosine 5′ phosphoramidate isolated. Thus adenosine 5′ phosphoramidate appears to be a normal constituent of $\text{Chlorella}$ cells like the enzyme which forms it: adenylyl sulfate: ammonia adenylyl transferase.     

Half-lives of messenger RNA species during growth and differentiation of Dictyostelium discoideum

The half-lives of functional messenger RNAs were determined by a method employing the drugs actinomycin D and daunomycin for the inhibition of mRNA synthesis; the activity of extracted mRNAs was determined by an in vitro translation assay. Several controls indicated that this method yielded reliable values for mRNA half-lives; in particular, the declining rate of protein synthesis in the presence of the drugs is due predominantly to the decay of translatable mRNA. This method was used to determine the half-lives of two specific mRNAs—encoding actin and a protein of MW 51,000—as well as that of total cytoplasmic mRNA activity during growth and at several times in differentiation. The half-lives of at least these two mRNAs were shown to be distinctly different from that of the total mRNA population—about 4 hr. However, no significant change in any of these half-lives was observed between growing and developing cells. Therefore wholesale alterations in the degradation rates of total and at least specific messages do not appear to play a role in the regulation of gene expression during Dictyostelium development.     

Phenotypic dissections of the Blastocladiella emersonii zoospore's developmental choice

A developmentally homogeneous neural crest cell population has been used to assay the role of environmental factors in regulating crest cell differentiation. If cultured on tissue culture plastic, virtually all of the cells of this population differentiate into melanocytes. In contrast, when these cells are cultured for 3 or more days on substrata “conditioned” by somite fibroblasts, the proportion of cells undergoing melanogenesis decreased and the proportion expressing formaldehyde-induced fluorescence (FIF), characteristic of catecholamine-containing cells, increased. For a limited period of culture on somite-conditioned substrata, some cells in the population exhibit both pigment granules and fluorescence. Collagen-coated substrata decreased the number of cells that formed pigment but did not stimulate FIF. In contrast, optimum doses of exogenous cellular fibronectin mimicked the effect of somite-conditioned substrata, suppressing melanogenesis and promoting FIF. Glycosaminoglycan-derivatized substrata (i.e., hyaluronic acid, various chondroitin sulfate preparations, and heparin) did not alter the differentiative homogeneity of the cultured crest cell populations. The choice and expression of phenotype by some members of a cultured crest cell population can, therefore, be affected by environmental stimuli provided in the form of certain substrate-attached macromolecules. We suggest that optimal concentrations of some extracellular matrix components produced by embryonic tissue and normally encountered by migrating crest cells may elicit the expression of FIF in crest cells that would otherwise follow a different developmental pathway.     

Base-pairing between distant regions of the Escherichia coli 16 S ribosomal RNA in solution.

Intramolecular crosslinks have been introduced into Escherichia coli 16 S ribosomal RNA in aqueous solution by irradiation in the presence of hydroxymethyl-trimethylpsoralen. When the crosslinked RNA is denatured and examined in the electron microscope the most striking features are a variety of large open loops. In addition, because the crosslinked molecules are shortened compared to non-crosslinked molecules, there are likely to be small hairpins not resolved by the present technique. The sizes and positions of 11 loop classes have been determined and oriented on the molecule. The frequency of occurrence of the different classes of loops depends on the crosslinking conditions. When the crosslinking is done in solutions containing Mg²⁺, at least four of the loop classes appear with greater frequency than they do in 3.5 mm-NaCl. The loops presumably arise because complementary sequences separated by long intervening regions are being crosslinked. These base-pairing interactions between residues distant in the primary structure appear to be prominent features of the secondary structure of rRNA in solution.     

Hyaluronidase activity during thyroxine-induced tadpole metamorphosis.

Immersion of Rana catesbeiana tadpoles in 10^?7Ml-thyroxine gives rise to increases in brain and backskin hyaluronidase activity. After 10 days of immersion, there is a 1.9-fold increment in brain enzyme activity and a 2.5-fold increment in the backskin. The rise in activity occurs mainly between the seventh and tenth days of treatment. During the 10-day treatment, hyaluronate content in the backskin decreases to 22% of the control level while sulfated glycosaminoglycan increases markedly, but no significant change in brain glycosaminoglycan composition occurs. The onset of major metamorphic events was observed between the seventh and tenth days of immersion in thyroxine.     

Synthesis of RNA containing polyadenylic acid sequences in preimplantation rabbit embryos

Messenger RNA synthesis has been estimated by assaying polyadenylic acid (poly A)-rich sequences in heterogeneous RNA from preimplantation rabbit embryos. Poly A containing RNAs are synthesized at least as early as the 16-cell stage and continue to be made through blastocyst formation and maturation. Sixty to 78% of the heterogeneous polysomal RNA in blastocysts contain poly A sequences. The portion of the heterogeneous RNA containing poly A sequences does not appear to change markedly between cleavage and blastocyst stages of development. Poly Arich sequences are greater than 4 S and consist of at least 84% adenine residues. RNA molecules ranging from 6 S to greater than 28 S contain poly A sequences.     

The atypical RNA components of cytoplasmic ribosomes from Crithidia fasciculata

RNA extracted by cold phenol from the large cytoplasmic ribosomal subunit of the trypanosomatid flagellate Crithidia fasciculata and analyzed by polyacrylamide gel electrophoresis at 4 °C consisted of one species with a molecular weight of 1.3 × 10⁶ (relative to ribosomal RNA from E. coli MRE 600). When extracted with hot phenol (65 °C), the large ribosomal subunit gave rise to two components with molecular weights of 0.72 and 0.56 × 10⁶. On heating for 60 s, followed by rapid cooling, the single cold-phenol-extracted 1.30 × 10⁶-dalton species completely dissociated into two components of molecular weights 0.72 and 0.56 × 10⁶, present in equimolar amounts. When analyzed by polyacrylamide-agarose gel electrophoresis in the presence of SDS, RNA extracted by cold phenol from the large cytoplasmic ribosomal subunit consisted of three components of molecular weights 1.3, 0.72, and 0.56 × 10⁶, present in apparently equimolar amounts. RNA from the small cytoplasmic ribosomal subunit consisted of one species with a molecular weight of 0.84 × 10⁶, independent of extraction or analytical conditions. It is proposed that under high salt and low temperature conditions, the large ribosomal RNA molecule is held together by its secondary structure, and that denaturing extraction or analytical conditions reveal an otherwise “hidden” lesion present in the molecule in vivo.     

Defect in translation of poliovirus RNA at the restrictive temperature.

Translation of the RNA of LSc type 1 poliovirus was examined in vivo at the restrictive temperature (39 °C). During the first two hours of infection at 39 °C the levels of viral polyribosomes were 50% lower than at 35 °C (permissive temperature). During the third hour of infection at 39 °C, only 4 to 10% of the control levels of polyribosomes were observed. Three experiments indicate that the elongation of viral peptides was not occurring properly at 39 °C. First, cultures incubated at 39 °C during the third hour of infection with both [³⁵S]methionine and [³H]uridine exhibit a fourfold increase in the ratio of viral protein/viral RNA in the polyribosome region of sucrose gradients in comparison to controls kept at 35 °C. However, at both temperatures the relative size distribution of polyribosomes was similar. Second, the ratios of released protein/nascent protein after 90-second and 5-minute pulses with [³⁵S]methionine indicate that elongation of peptide chains was inhibited at 39 °C. Third, when initiation of synthesis of viral protein was blocked with 150 mM-NaCl, the polyribosomes disaggregated four to five times more rapidly at 35 °C than at 39 °C. The data indicate that translation of viral RNA is inhibited at the restrictive temperature because of a reduced rate of elongation of viral proteins. The reduced rate of peptide chain elongation at 39 °C was fully reversible when cultures were shifted to 35 °C in the presence of 150 mm-NaCl. The latter finding indicates a conformational change in viral protein at 39 °C.     

Molecular organization of ribosomal RNA genes clustered at variable chromosomal sites in Triturus vulgaris meridionalis (Amphibia, Urodela)

The ribosomal RNA genes of Triturus vulgaris meridionalis (Amphibia, Urodela) show the peculiar feature of being clustered not only at the nucleolar organizer, present in the species at a definite chromosome location, but also at "additional ribosomal sites" which are highly variable in number and chromosomal distribution among individuals. The additional ribosomal sites are most often found at specific chromosome regions, such as telomeres, C-bands and centromeres, in virtually all the chromosomes. With increasing numbers of additional clusters, the genomic dosages of ribosomal RNA genes are found to increase over a tenfold range, though not linearly. At a molecular level, the ribosomal DNA repeats differ in size because of discrete variations in the length of the non-transcribed spacers. However, the resulting length heterogeneity of the gene family is rather limited within a single genome as well as within the species. Many of the ribosomal loci appear to be internally homogeneous with respect to the repeat length. Moreover, separate clusters from distant genomic regions can share the same size class of ribosomal repeats even in the same specimen. The nucleolar organizer is mostly endowed with "shorter" ribosomal repeating units, ranging in size from 13.7 X 10(3) to 15.2 X 10(3) base-pairs. The additional ribosomal sites are characterized by the occurrence of "longer" repeats, ranging in size from 16.2 X 10(3) to 19.7 X 10(3) base-pairs. The "shorter" class of ribosomal repeats is always detected in the amplified ribosomal DNA, suggesting that the nucleolar organizer locus is involved in the amplification process in most oocytes. "Longer" ribosomal repeats are also detectable in the amplified ribosomal DNA of a few females.     

A modified amino acid analyzer with greater versatility

An older amino acid analyzer was easily modified with commercially available components to update it by providing more convenient sample application, more accurate timing, greater sensitivity, and automatic regeneration. New features were introduced to permit the optional use of different buffer systems and methodologies as well as the convenient analysis of unusual basic amino acids.     

Secondary structure in transfer RNA genes

The bacterial strand of the heteroduplex of λh80 dglyTsu⁺₃₆tyrTthrT with λh80 carries a cluster of three transfer RNA genes. The bacterial strands of the heteroduplexes of φ80hpsu^+,?_III and φ80hpsu^?_III with φ80h carry two and one genes for tyrosine tRNA, respectively. When these heteroduplexes are spread under weakly denaturing conditions (low formamide), secondary structure features consisting of one or several closely clustered, short duplex regions (folds) are observed. The features map at the positions of the tRNA gene clusters. They are not seen if the DNA is hybridized to Escherichia coli tRNA. It is concluded that the secondary structure features are due to self-complementary sequences in the tRNA genes. In some cases, the duplex folds appear to involve base pairing between sequences on different tRNA genes of a cluster and may also involve the spacer sequences between the tRNA sequences.     

Clustering of the DNA sequences complementary to repetitive nuclear RNA of HeLa cells.

We have studied the hybridization profile of heterogeneous nuclear RNA from HeLa cells across DNA density gradients, and found that components in the high molecular weight fraction of heterogeneous nuclear RNA of HeLa cells hybridize to discrete density fractions on the light and heavy sides of the DNA. The conditions used for hybridization in this work allowed the detection of only those components in the RNA complementary to reiterated sequences in the DNA. These sequences in HnRNA are known to include double-stranded regions, which can be isolated readily. The double-stranded RNA shows a pattern of hybridization across a DNA density gradient which is similar to that of total HnRNA. It is concluded that the repeated sequences in HnRNA are complementary to clusters of repeated sequences in the DNA.     

Ribonucleoprotein organization of eukaryotic RNA. XXXII. U2 small nuclear RNA precursors and their accurate 3' processing in vitro as ribonucleoprotein particles

Biosynthetic precursors of U2 small nuclear RNA have been identified in cultured human cells by hybrid-selection of pulse-labeled RNA with cloned U2 DNA. These precursor molecules are one to approximately 16 nucleotides longer than mature U2 RNA and contain 2,2,7-trimethylguanosine "caps". The U2 RNA precursors are associated with proteins that react with a monoclonal antibody for antigens characteristic of small nuclear ribonucleoprotein particles. Like previously described precursors of U1 and U4 small nuclear RNAs, the pre-U2 RNAs are recovered in cytoplasmic fractions, although it is not known if this is their location in vivo. The precursors are processed to mature-size U2 RNA when cytoplasmic extracts are incubated in vitro at 37 degrees C. Mg2+ is required but ATP is not. The ribonucleoprotein structure of the pre-U2 RNA is maintained during the processing reaction in vitro, as are the 2,2,7-trimethylguanosine caps. The ribonucleoprotein organization is of major importance, as exogenous, protein-free U2 RNA precursors are degraded rapidly in the in vitro system. Two lines of evidence indicate that the conversion of U2 precursors to mature-size U2 RNA involves a 3' processing reaction. First, the reaction is unaffected by a large excess of mature U2 small nuclear RNP, whose 5' trimethylguanosine caps would be expected to compete for a 5' processing activity. Second, when pre-U2 RNA precursors are first stoichiometrically decorated with an antibody specific for 2,2,7-trimethylguanosine, the extent of subsequent processing in vitro is unaffected. These results provide the first demonstration of a eukaryotic RNA processing reaction in vitro occurring within a ribonucleoprotein particle.     

A radiochemical assay for N5-formyltetrahydrofolic acid (citrovorum factor) in serum and urine.

N⁵-Methyltetrahydrofolate, but not N⁵-formyltetrahydrofolate, can be measured in biological fluids by ligand-binding radioassay. Therefore, in order to measure N⁵-formyltetrahydrofolate by radioassay, it is chemically converted to N⁵-methyltetrahydrofolate by acidification followed by reduction with borohydride. By this method, 70–113% of N⁵-formyltetrahydrofolate added to serum and urine was recovered. The plasma clearance of the mixture of diastereoisomer of N⁵-formyltetrahydrofolate (Leucovorin) following intravenous administration to two normal subjects was rapid for the first 30 min, but then plateaued and cleared very slowly over the next 90 min, most probably because of the accumulation of the inactive isomer which was slowly excreted in the urine during this time period.     

Histamine H2-receptors in the gastric mucosa: role in acid secretion.

Currently, two major hypotheses dominate thinking about the role of histamine in the regulation of gastric acid secretion. Code has proposed that histamine is the final common mediator of secretagogue action on the parietal cell while Konturek and Grossman have suggested a multi-receptor control of the secretory process. Experimental results derived from the use of recently synthesized histamine H₂-receptor antagonists have been used by both groups to support their hypotheses. Paradoxically, these hypotheses depend on the presumed specificity of the H₂-antagonists in blocking histamine mediated acid secretion while the apparent lack of such secretagogue specificity of the H₂-antagonists is an important basis for the development of the hypotheses. Our review will analyze the experimental evidence which implicates the histamine H₂-receptor in the control of hydrogen ion secretion as well as evidence for and against receptor specificity in the gastric mucosa of histamine H₂-receptor antagonists.