Spécificité des interactions DNA-peptides et DNA-histones en spectroscopie de résonance Raman dans l'ultraviolet

Resonance Raman spectra of complexes between DNA and peptides on one hand, DNA and histones on the other, were obtained.Our work has clearly shown a DNA-base recognition by various protides. The basic residues selectively modify the environment of DNA bases : G-C bases for the lysine residues, A-T bases for the arginine residues, wether the residues are alone or included in a protein. This selectivity of interaction has allowed us to confirm the particular role played by H4 in the structure of nucleosomes and specially of the arginine residues.     

Interactions de la chloroquine avec la ferriprotoporphyrine IX: Étude par résonance magnétique nucléaire

Chloroquine is still the antimalarial drug which is the most utilized. Nevertheless the molecular mode of action of this drug is not very well understood. When mouse erythrocytes injected with Plasmodium berghei are exposed to chloroquine, the first biochemical event is rapid accumulation of the drug. This process is energy dependent, saturable and competively inhibited by drugs of the same therapeutic class (Quinine, Amodiaquine, Mefloquine). Receptors for chloroquine have been proposed for the process of accumulation. The nature of the chloroquine receptor is presently the subject of debates. The latest hypothesis proposed by Chou and coll. [12], is that ferriprotoporphyrin IX, formed by the degradation of hemoglobin by the parasite, binds to chloroquine with a dissociation constant of 3.5.10⁻⁹ M. We studied here the molecular interactions between these two species by Proton Nuclear Magnetic Resonance in order to elucidate the nature and the geometry of were undertaken.The perturbations of the NMR spectra of chloroquine (10⁻² M) induced by addition of hematin or hemin were measured. Two types of measures were indertaken.The first study carried out in organic solvent (DMSO) has shown that the interaction occured between the acidic functions of hemin and the sidechain nitrogen of chloroquine. The iron atom was not implicated in this process.The second study carried out in aqueous medium (phosphate buffer; 0.1 M; pH = 7) allowed us to demonstrate that chloroquine is able to intercalate into a polymer of hematin. The quinoleic nucleus of chloroquine was intercalated between two dimers of hematin as shown by the broadening of the signal of the quinoleic protons due to very large increase in the correlation time.Finally it was shown that chloroquine is associated as a dimer in aqueous medium by hydrophobic interactions. The association constant is 5.5 M⁻¹.     

Etude experimentale de L′auto-association des molécules modèles dipeptidiques. III. Influence de la dimerisation stéréosélective sur les spectres de résonance magnétique protonique

Proton magnetic resonance spectra of model dipeptide molecules R₁–C′₁O₁–N₂H₂–CHR₂–C′₂O₂–N₃H₃–R₃ in CCl₄ solutions exhibit splited signals when investigating on mixtures of L and D enantiomers differing from the racemic composition. The major effect is observed on amide proton signals which are the ones most sensitive to the ratio of aggregation. The stereoselective dimerization of enantiomeric molecules in the so-called C₅ conformational state is shown to be responsible for such a phenomenon, the intensity of which depends on the bulkiness of the side chain R₂. A theoretical approach is proposed which gives predictions in close agreement with our own experimental findings.     

Etude,par spectroscopie infra-rouge,de la conformation de quelques composés peptidiques modèles

Some experimental data are given on the infrared spectra between 3300 and 3500 cm^?1 of dilute solutions in carbon tetrachloride of three types of model compounds: CH_3?CONH-CH(R₁)-CONH(R₂), (I); CH₃-CON(CH₃)-CH(R₁)-CONH(R₂), (II) and CH₃-CONH-CH(R₁)-CON(R₂)₂, (III). In studying the N-H stretching bands, it was found that there are two types of intramolecular hydrogen bonds in these molecules; these result in two different cyclized conformations, C₅ and C₇, which contain respectively, five and seven atoms in the ring. By using model substances I, II, and III, in which the nitrogen atoms are unequally substituted, it is possible to identify the N-H stretching bands which are to be ascribed to the N-H oscillators included in the two different chelated conformations. It is found also that the stretching frequency of a free N-H oscillator depends upon the substituent on the nitrogen atom. Thus, it is possible to observe, with some of the model compounds I, four different absorption bands located at 3340, 3420, 3440, and 3460 cm^?1. The first two are ascribed to the N-H oscillators included in the H? bonds which lock the C₇ and C₅ conformations; the last two correspond to free N-H which differ with the substituent on the nitrogen atom.     

Analyse conformationnelle de la N-méthylamide de l'acide L-pyroglutamique par diffusion Rayleigh depolarisée,spectroscopie de vibration et calcul de l'energie conformationnelle

Conformational analysis of N-methylamide of pyroglutamic acid has been performed by theoretical energy calculations and experimental physical techniques, namely, laser Raman spectroscopy and depolarized Rayleigh scattering. The two theoretically predicted conformations are evidenced in crystalline state (ψ₁ = +169°) and in aqueous solution (ψ₁ ? ?20°). This study confirms the interest of a careful vibrational analysis of peptides and N-deuterated derivatives for providing an estimate of the dihedral angle ψ. The relationship between amide III frequency and ψ values is emphasized.     

Convergence des référentiels de qualité et implications pour la fonction technique biomédicale

Risk management in the hospital, which is one of the referentiels of the ANAES accreditation manual, may be considered on two levels. Firstly, risk management may be approached globally, in the same way as it is tackled in the accreditation process. Secondly, risk management may be more definite. A specific risk chosen in accordance with the priorities of a particular plan may be dealt with individually. In this respect, the tranfusion process allows the risk management method to be tested and developed.

La diversité floristique de la végétation psammophile de la région de Tlemcen (nord–ouest Algérie)

This study is devoted to the analysis of the psammophyte of the coastal and semi-continental dunes in Tlemcen. Interesting results have been obtained, in particular, on the biological and ecological aspects of the psammophyte. The interpretation from Factoriel analysis of correspondences enabled us to identify the different phytosociological classes (Cakiletea maritimae, Ammophiletea, Quercetea ilicis, Therobrachypodietea and Stellarietea mediae). Some of these classes (Cakiletea maritimae and Ammophiletea) inhabit, exceedingly well, the embryonic dunes. Some species (Therobrachypodietea) colonize the quickset dunes. Lastly, some others (Quercetea ilicis) settle in the more mature and stable dunes. By using the phytosociological and phytodynamical data, we have been able to understand the vegetation and its diversity. To cite this article: H. Stambouli-Meziane et al., C. R. Biologies 332 (2009).     

Modéliser les interactions moléculaires par la théorie des réseaux de jeux

We present a method to model biological systems, the theory of games networks. It extends game theory by multiplying the number of games, and by allowing agents to play several games simultaneously. Some important notions of biological systems, such as locality of interactions and modularity, can then be modelled. To cite this article: M. Manceny et al., C. R. Biologies 329 (2006).     

Sur la stéréospécificité de la ribonucléoside-diphosphate-réductase: préparation de désoxyribonucléosides pyrimidiques deutérés

Methyl 2-deoxy-3,5,6-tri-O-p-nitrobenzoyl- -ribo-hexofuranoside was converted into the glycosyl halide which was then condensed with 2,4-bis(trimethylsilyloxy)-pyrimidine in the presence of mercuric chloride to give, after alkaline methanolysis, 1-(2-deoxy-β- -ribo-hexofuranosyl)uracil, in a yield too low for the reaction to be applied to deuterated compounds. Methyl 2-deoxy- -allofuranoside-2-d was degraded into methyl 2-deoxy- -arabinofuranoside-2-d. Its di-p-nitrobenzoate was converted into the glycosyl halide which was coupled with 2,4-bis(trimethylsilyloxy)-pyrimidine to give, after alkaline hydrolysis, deuterated deoxyuridine. Thiationammonolysis of a mixture of the 3′,5′-di-p-nitrobenzoates of the latter compound and its anomer gave the corresponding deoxycytidines. Comparison of the n.m.r. spectra of these compounds to that of deuterated deoxycytidine, prepared by the enzymic reduction of cytidine 5′-pyrophosphate with the Escherichia coli system in the presence of deuterium oxide confirmed that the substitution of a hydroxyl group by a hydrogen atom proceeds with retention of configuration.     

Resonance Raman spectroscopie investigations on phenolate bridged binuclear Cu(II) complexes: A basis for the identification of the endogenous bridging

Phenolate bridged binuclear Cu(II) complexes were used to monitor the contribution of the endogenous bridging ligand to the resonance Raman spectrum of the oxygen transport protein such as hemocyanin. From the excitation profile of the intensity enhanced phenolate v_c-o the phenolate-to-Cu(II) charge-transfer transition of the four studied complexes has been located between 380 nm and 430 run, similar to the low-temperature absorption band in the hemocyanin spectra. By approaching the exciting laser frequency to this electronic transition, the whole spectral range 1250–1650 cm⁻¹ is strongly intensity enhanced and considered as the typical feature of this kind of phenolate bridged Cu(II) complexes. Comparison to mononuclear analogues pointed out no significant differences of the resonance enhanced Raman lines. The results are discussed in relation to the resonance Raman spectra of hemocyanin.     

Biosynthèse de cellulose bactérienne à pertir de glycérol sélectivement deutérié en position 1, 2, ou 3: Etude par résonance magnétique nucléaire

Glycerol specifically deuterated at C-1, C-2, or C-3 was prepared and used for the biosynthesis of bacterial cellulose with Acetobacter xylinum.The material obtained were converted into glucitol hexaacetate and analyzed by 250-MHz nuclear magnetic resonance and mass spectrometry. The spectra indicated that the protons of the C-3 position of the starting glycerol were incorporated as substituents of the C-6 and C-1 positions of the cellulose. Similarly, protons of the C-2 and C-5 positions of the cellulose came essentially from water and the protons bonded at the C-3 and C-4 positions of the cellulose from protons bonded to C-1 of the starting glycerol.     

Cancer de la prostate : utilité de la TEP-TDM à la F-fluorocholine

In oncology, positron emission computed tomography (PET/CT) has become an essential tool for initial staging, response evaluation and follow-up of cancer patients. Most of the frequent tumors (lung, breast, esophagus, and lymphomas) are highly avid for ¹⁸F-fluorodeoxyglucose (¹⁸FDG), but prostate cancer has not demonstrated significant uptake of FDG. The development of new tracers labeled with ¹⁸F such as choline analogs allowed already to obtain interesting results particularly in patients with biological relapse and inconclusive conventional imaging work-up. The impact of ¹⁸F-flurocholine PET/CT on patient management needs to be validated in large studies, but many centers use already this examination in order to guide further management, including radiotherapy planning.     

Etude par Spectroscopie Infrarouge de la Transformation Hélice—Chaine Statistique des Polypeptides. I. Etude Comparée de l'Interaction de la Poly-L-alanine et d'un Amide Modèle avec l'Acide Trifluoroacétique

Infrared spectra of poly-L -alanine in trifluoroacetic acid-chloroform mixtures have been investigated and compared with those of a model amide (N-methylacetamide). The purpose of this work is to determine the nature of peptide-acid specific interactions responsible for the helix-random coil transition of polymer chains. Analysis is made in using amide (A, I, II, III) and acid (νC?O, νOH) vibrations which are specially sensitive to molecular interactions. We examined a model compound to determine the spectral characteristics of the different complexes or species formed between amide and acid. At a low acid concentration, hydrogen-bonded complexes: ? (NH) C?O…?HOOCCF₃ (1) are evidenced but no association between amide NH and acid CO groups (complexes A) is observed. For higher acid concentrations complexes (I) are progressively changed into ions pairs and free ions, which result from amide protonation by acid, according to the exothermic equilibrium (I)?? (NH)COH⁺, ^?OOCCF₃(II). Amidium and carboxylate bands are localized between 1680–1705 cm^?1 and 1620–1625 cm^?1, respectively. If the cation band is always clearly seen, the anion band is only observed for the most acidic solutions. For the polymer, a gradual complexation of type (I) is observed for all acid concentrations. From our results, the assumption of an (A) type interaction seems very unlikely but cannot be excluded. Moreover, proton transfer—similar to that observed with a model amide—is never evidenced since, in particular, the amidium band characteristic of protonation is never seen. In contrast to previous investigations, we conclude that the helix-random coil transition of polypeptides is not due to the protonation of the peptide functions. This transition does suggest a strong interaction by hydrogen bonds between polymer and acid molecules.     

Étude de la fixation de faible affinité du Ca par les membranes externe et interne des mitochondriest et par le réticulum endoplasmique lisse et rugueux de foie de rat

Two classes of low-affinity Ca²⁺-binding sites have been shown to exist. One type dissociates as pH rises, thereby increasing the amount of bound Ca²⁺. The other type, which does not change in number, has an affinity for Ca²⁺ which is dependent on ionic strength. The former is possibly a phospholipid, the latter possibly a protein.Under our experimental conditions, the inner mitochondrial membrane contained binding sites of the second class ony while other membranes contain both types. Rough endoplasmic reticulum contains yet another class of sites at the ribosomal level.

Résumé

L'existence de deux catégories de sites de fixation de faible affinité du Ca²⁺ a été mise en évidence. Les uns se dissocient de plus en plus quant le pH s'éléve permettant une augmentation des quantités de Ca²⁺ fixé, les autres sont invariables en nombre, mais leur affinité pour le Ca²⁺ est dépendante de la force ionique du milieu. Les premiers pourraient étre de nature phospholipidique, les seconds de nature protéique.Dans nos conditions expérimentales, la membrane interne des mitochondries possède uniquement des sites de la seconde catégorie. Les autres membranes renferment simultanément les deux sortes de sites. Le réticulum endoplasmique rugueux possède des sites supplémentaires au niveau des ribosomes.     

Préparation et forme sérique de la protéine réactive C de lapin

The preparation of rabbit C-reactive protein (CRP) involves a single step affinity chromatography. This preparation takes advantage of the calcium-dependent affinity of CRP for an agarose gel bearing 2-aminoethanol dihydrogen-phosphate as a ligand. A prior chromatography on agarose gel without the ligand allows the uptake of the serum amyloid P-component (SAP).The CRP prepared according to this method is able to form precipitating complexes in agarose with rabbit lipoproteins. The specificity of these interactions is studied. It is demonstrated that CRP-High Density Lipoproteins (HDL) association produces a second precipitation arc when the pure CRP is revealed by a specific antiserum in agarose. Moreover, CRP in the serum is shown to be in the bound form only, and the binding involves Low Density Lipoproteins (LDL) exclusively.     

Modalités de l'inhibition de la croissance et de la synthèse des acides nucléiques des plantules de blé par l'acide abscissique

The growth of wheat seedlings (Triticum sativum) is inhibited by abscisic acid (ABA). The inhibition increases with the concentration of ABA (from 10^-6M to 5 × 10^-5M) and is stronger in the case of coleoptiles and first leaves than in roots. In contrast, naphthaleneacetic acid (ANA), at 10^-5M, exerts its greatest inhibitory effect on the roots. The inhibitory effect of ABA on coleoptiles can be partially overcome by kinetin and to a much smaller degree by gibberellic acid. Neither of these two compounds, at 10^-5M, had any effect on the ABA-induced inhibition of root growth. The RNA and DNA contents per plant organ are considerably reduced after treatment of the seedlings with ABA, particularly in the coleoptiles and the first leaves. The incorporation of uracil-2-¹⁴C and uridine T (G) into RNA of treated seedlings is reduced in the case of coleoptiles and first leaves, but considerably enhanced in roots. The mechanism of the action of ABA is discussed in the light of these results.     

Contribution à l'étude de la structure de la chromatine: I - Etude physico-chimique de la stabilité de la chromatine

Physicochemical studies of calf thymus chromatin were performed on micromicellar suspensions by thermal denaturation. These diluted suspensions were obtained, by a controlled shearing method, from a compact gel chromatin. Sedimentation and free-flow electrophoresis determined the size distribution of these particles. The most important result is a new transition on the melting profiles corresponding to a sudden increase of solution turbidity. This chromatin solution transition occurs at a higher temperature than usual DNA transition. The degree of « turbidity transitiondiminishes with micelle size but disappears when they are very mildly degraded by DNAases and when F₁ histone fraction is removed.This transition is not only size dependent but also depends on the micellar structure. This phenomenon is interpreted as an excluded volume effect by contact between compact and native regions of nucleoprotein micelles and denatured coils of DNA. Our study tried to show that the degree of turbidity transition can be a criterion of chromatin native structure.     

Etude préliminaire des effets de la mise en eau du Réservoir de LG-2 (Territoire de la Baie James,Québec) sur le seston grossier et le zooplancton des rivières et des lacs inondés

Preliminary Study of the Effects of Impoundment of LG-2 Reservoir (James Bay Territory, Quebec) on the Net Seston and the Zooplankton of Impounded Rivers and Lakes The effects of impoundment on the biomass of net seston and zooplankton in lakes and rivers of Northern Quebec were investigated from 1978 to 1980, before, during and after the completion of LG2 Reservoir on the River La Grande (53° 54′ N, 76° 78′ W). In lotic stations, a 41–77% decrease in net seston was observed due to sedimentation of mineral particles (36–80 mg/m³ in 1978 to 10–21 mg/m³ in 1979). The ratio of organic to total seston increased from an average of 0.18 before the impoundment to 0.65 after. The flooding phase brought about a trophic upsurge; the biomass of the zooplankton increased by one to two orders of magnitude at the various sites; the greatest increases occurred in the central stations near the dam, the smallest in the upper stations near the inflow. In lake stations, no significant difference between years could be detected; the mean zooplankton biomass for all three years ranged from 6.59 mg/m³ to 34.34 mg/m³. Spatial variations between lakes were however significant. Results are compared with those in other natural lakes in Canada and reservoirs in the United States. Comparative examination of phytoplankton biomass before and after impoundment of LG2 Reservoir suggests that bacterioplankton and allochthonous organic material are key elements in the pelagic food chain after impoundment.     

Étude de l'interaction de la thiamine diphosphate avec l'ion magnésium

The action of magnesium ion on the exchange rate of the proton in C₂ of thiamine and thiamine diphosphate is studied at different values of pD. Above pD 5 the ion Mg²⁺ increases this exchange rate. The phenomenon is markedly enhanced for TDP rather than thiamine and increases with pD. Below pD 5 magnesium decreases the exchange rate. This decrease is greater for TDP than for thiamine. The maximum effect is reached at a magnesium concentration of 0.5/1 for thiamine and of 1/1 for TDP.T₁ measurements are made for different pH values with and without magnesium ion. Results seem to prove that an increase in pD values from 3.9 to 5.9 leads to an accentuation of the molecules «folded form. Nevertheless for a given pD value the TDP-Mg complex seems to have a more «folded form than TDP.     

Differential Imaging of Biological Structures with Doubly-resonant Coherent Anti-stokes Raman Scattering (CARS)

Coherent Raman imaging techniques have seen a dramatic increase in activity over the past decade due to their promise to enable label-free optical imaging with high molecular specificity ¹. The sensitivity of these techniques, however, is many orders of magnitude weaker than fluorescence, requiring milli-molar molecular concentrations ^1,2. Here, we describe a technique that can enable the detection of weak or low concentrations of Raman-active molecules by amplifying their signal with that obtained from strong or abundant Raman scatterers. The interaction of short pulsed lasers in a biological sample generates a variety of coherent Raman scattering signals, each of which carry unique chemical information about the sample. Typically, only one of these signals, e.g. Coherent Anti-stokes Raman scattering (CARS), is used to generate an image while the others are discarded. However, when these other signals, including 3-color CARS and four-wave mixing (FWM), are collected and compared to the CARS signal, otherwise difficult to detect information can be extracted ³. For example, doubly-resonant CARS (DR-CARS) is the result of the constructive interference between two resonant signals ⁴. We demonstrate how tuning of the three lasers required to produce DR-CARS signals to the 2845 cm^-1 CH stretch vibration in lipids and the 2120 cm^-1 CD stretching vibration of a deuterated molecule (e.g. deuterated sugars, fatty acids, etc.) can be utilized to probe both Raman resonances simultaneously. Under these conditions, in addition to CARS signals from each resonance, a combined DR-CARS signal probing both is also generated. We demonstrate how detecting the difference between the DR-CARS signal and the amplifying signal from an abundant molecule''s vibration can be used to enhance the sensitivity for the weaker signal. We further demonstrate that this approach even extends to applications where both signals are generated from different molecules, such that e.g. using the strong Raman signal of a solvent can enhance the weak Raman signal of a dilute solute.