Catalytic Antibodies with Perhydrolytic Activity

Monoclonal antibodies catalyzing lysis of 4-nitrophenyl esters have been created using a phosphonate as hapten in the immunization. Among 960 hybridomas screened, 3 were found to produce antibodies catalyzing hydrolysis of 4-nitrophenyl butanoate (1). Two of the antibodies accelerate the reaction by factors of 1.3 × 10⁴ and 1.1 × 10⁴, respectively, while the third antibody is significantly less effective. The two catalytically most effective antibodies also catalyze perhydrolysis of 1, i.e., lysis with hydrogen peroxide, to generate peroxybutanoic acid. Perhydrolysis was found to be the predominant reaction even in dilute solutions of hydrogen peroxide. Both antibodies also catalyze hydrolysis of both 4-nitrophenyl hexanoate and decanoate, but do not catalyze hydrolysis of 4-nitrophenyl acetate. The antibodies are more selective with respect to the aromatic part of the substrate as they do not catalyze hydrolysis of 2-nitrophenyl butanoate or 4-sulfophenyl nonanoate. Furthermore, neither of the antibodies catalyze hydrolysis of pre-formed peroxybutanoic acid.     

Crystal Structure of Ripk4 Reveals Dimerization-Dependent Kinase Activity

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Crystal Structure of PG16 and Chimeric Dissection with Somatically Related PG9: Structure-Function Analysis of Two Quaternary-Specific Antibodies That Effectively Neutralize HIV-1

HIV-1 resists neutralization by most antibodies. Two somatically related human antibodies, PG9 and PG16, however, each neutralize 70 to 80% of circulating HIV-1 isolates. Here we present the structure of the antigen-binding fragment of PG16 in monoclinic and orthorhombic lattices at 2.4 and 4.0 Å, respectively, and use a combination of structural analysis, paratope dissection, and neutralization assessment to determine the functional relevance of three unusual PG9/PG16 features: N-linked glycosylation, extensive affinity maturation, and a heavy chain-third complementarity-determining region (CDR H3) that is one of the longest observed in human antibodies. Glycosylation extended off the side of the light chain variable domain and was not required for neutralization. The CDR H3 formed an axe-shaped subdomain, which comprised 42% of the CDR surface, with the axe head looming ∼20 Å above the other combining loops. Comprehensive sets of chimeric swaps between PG9 and PG16 of light chain, heavy chain, and CDR H3 were employed to decipher structure-function relationships. Chimeric swaps generally complemented functionally, with differences in PG9/PG16 neutralization related primarily to residue differences in CDR H3. Meanwhile, chimeric reversions to genomic V genes showed isolate-dependent effects, with affinity maturation playing a significant role in augmenting neutralization breadth (P = 0.036) and potency (P < 0.0001). The structural and functional details of extraordinary CDR H3 and extensive affinity maturation provide insights into the neutralization mechanism of and the elicitation pathway for broadly neutralizing antibodies like PG9 and PG16.To create antibodies capable of effectively neutralizing human immunodeficiency virus type 1 (HIV-1), the adaptive humoral response is driven to exceptional lengths (reviewed in reference 8). Indeed, the response often fails, and sera from individuals infected with HIV-1 typically display limited neutralization breadth (59). After several years of infection, however, antibodies capable of neutralizing diverse viral strains develop in 15 to 25% of infected individuals (3, 16, 32, 33, 49, 53). Details of the adaptive changes that allow for effective recognition are of direct vaccine relevance, and clues from rare neutralizing antibodies have been eagerly sought.Two broadly neutralizing antibodies, PG9 and PG16, were recently identified with single cell-sequencing techniques after direct microneutralization assessment of secreted antibody from individually plated, stimulated B cells (58). These antibodies are somatically related and appear to be derived from the same recombination of heavy and light chains. They both recognize a site on HIV-1 gp120 composed of elements from the second and third variable regions (V2 and V3). Despite the vaunted diversity of the HIV-1 gp120 envelope and the even higher sequence variability in the V2 and V3 regions (26), neutralization assays indicate that the recognized epitope is conserved in 70 to 80% of circulating viral isolates (58).To investigate the molecular features of PG9 and PG16 that account for their neutralization effectiveness, we prepared antigen-binding fragments (Fabs) of each antibody and screened for crystallization. We were able to obtain a number of crystals, and those of PG16 proved suitable for structural analysis. Determination of the PG16 structure visualized several unusual features, and structure-function analysis indicated that two features, extensive affinity maturation and an exceptionally long heavy chain-third complementarity-determining region (CDR H3), were critical to its neutralization effectiveness. Barriers to eliciting these two features provide a likely explanation for the rarity of antibodies like PG9 and PG16; understanding and overcoming such barriers may form the basis for an effective HIV-1 vaccine.     

Effect of Ethylene on Peroxidase Activity

Ethylene increased the peroxidase activity of nine out of ten varieties of sweet potato (Ipomoea batatas (L.) Lam.) root disks tested. The increase which was observed four hours after ethylene treatment was partially overcome by carbon dioxide. The increase was inhibited by actinomycin D and cycloheximide, indicating de novo protein synthesis. Electrophoretic separation on polyacrylamide gels indicated the appearance of two new peroxidase bands. Peroxidase activity in bean petiole explants was localized around the separation layer. Ethylene caused a small increase in peroxidase activity in the petiolar portion of the explant. Phenolic substances had no effect on abscission consistent with their proposed roles as cofactors for auxinoxidase, indicating that auxin-oxidase does not play a role in abscission of Coleus blumei Benth. abscission zone explants.     

Peroxidase Activity in Soybeans Following Inoculation with Phytophthora sojae

The effects of race-specific resistance as conditioned by Rps genes (rps, Rps1-k, Rps2, Rps3, Rps6) in two genetic backgrounds (Williams & Harosoy) on accumulation of soluble peroxidases were determined by a soybean peroxidase capture assay (SPCA) after inoculation with P. sojae races 2, 7, or 25. Peroxidase activity increased in all isolines during the 72 h after inoculation, but reactions varied depending on time after inoculation, genetic background, Rps gene and P. sojae race. Peroxidase activity was higher in race-specific resistant than in susceptible reactions at 72 h. after inoculation, except for plants with the Rps2 gene which confers a unique form of root resistance in addition to the whole plant race-specific resistance. Williams isolines had larger increases in peroxidase activity than Harosoy isolines when data were averaged across Rps genes, and was most evident when plants were inoculated with race 2. When soybeans were inoculated with race 7 Rps1-k resistant plants had the highest increase in peroxidase activity, but Rps2 susceptible plants had a significantly higher peroxidase activity than plants with rps, Rps3, and Rps6 that were also susceptible. Results from inoculations with race 25 were somewhat different, Rps2 resistant plants had the highest increase in peroxidase activity; however, plants with the Rps3 or Rps6 gene that were also resistant did not have a significantly higher peroxidase activity than susceptible plants with the rps or Rps1-k gene.     

Studies of Peroxidase Refolding in the Presence of Specific Antibodies

A panel of eight monoclonal antibodies raised against horseradish root peroxidase was assembled and characterized. Affinity constants were determined for all antibodies, and their specificity for various structural forms of the enzyme (native peroxidase, apoperoxidase, and denatured peroxidase) were assessed by competitive enzyme immunoassay. The effects of the antibodies on the process of refolding of peroxidase after its denaturing with 6.5 M guanidine chloride were studied spectrophotometrically, by the restoration of the enzymatic activity in the reaction of 2,2-azino-bis(3-ethylbenzthiazoline-6-sulfonate) oxidation. The yield of the active enzyme in the course of the refolding was increased by 1.5–1.7 times in the presence of antibody H1. Effects of the antibodies constituting the panel on the activity of native peroxidase and the stability of its dilute solutions were analyzed.     

Screening Actinomycetes for Extracellular Peroxidase Activity

A diverse collection of actinomycete strains were screened for production of extracellular peroxidase activity by adapting a chemiluminescence analysis system developed for horseradish peroxidase-based enzyme-linked immunosorbent assay. Extracellular peroxidase activity was found to be common but quantitatively variable, and this rapid and sensitive screening system permitted identification of a small group of high-producing strains. A range of spectrophotometric assays were compared for the measurement of peroxidase activity in concentrated culture supernatants of two selected thermophilic streptomycetes. Of these, the peroxide-dependent oxidation of 2,4-dichlorophenol was identified as the most robust and reproducible assay for quantitative studies.     

Glutathione Peroxidase Activity in Porcine Blood

Determination of the seleno-enzyme glutathione peroxidase (GSH-Px) in blood from Danish Landrace pigs was done using a quantitative, spectrophotometric method and a simple “spot test”. A close correlation between the net reaction rate measured spectrophotometrically (Δ A/min.) and time for defluores-cence (minutes) was obtained (r2 = 0.72—0.77, P < 0.0005). From these results the factors used for a conversion of defluorescence time to u/g hemoglobin were evaluated. The results further showed that the “spot test” can be used as a screening method for detection of subnormal GSH-Px levels in pigs. While red cell GSH-Px seems independent of the sex, an elevation of both plasma and red cell GSH-Px was found with increasing age of pigs. The normal range of red cell GSH-Px activity was wide, contrasting the small variations observed in the individual pig. Some evidence that porcine red cell GSH-Px is under genetical control was found and discussed in relation to the possible use of GSH-Px as an indicator of the pig's selenium status.     

Peroxidase Activity in Linum usitatissimum L

Peroxidase activity was measured at three stages, from seedlingto maturity, in leaf and stem tissue of two genotypes of Linumusitatissimum. The plants were grown throughout in growth chambers,allowing close control of the environmental conditions. Therewere large and consistent differences between activities inthe genotypes, between leaf and stem tissue, and between dialyzedand undialyzed extracts. Dialysis appeared to remove inhibitor(s).The consistency of the genotypic differences under these conditionspermitted reliable comparisons, from the seedling stage to maturity,to be made, a finding relevant to inheritance studies of peroxidaseactivity.     

Identification of Novel Genetic Loci Associated with Thyroid Peroxidase Antibodies and Clinical Thyroid Disease

Autoimmune thyroid diseases (AITD) are common, affecting 2-5% of the general population. Individuals with positive thyroid peroxidase antibodies (TPOAbs) have an increased risk of autoimmune hypothyroidism (Hashimoto''s thyroiditis), as well as autoimmune hyperthyroidism (Graves'' disease). As the possible causative genes of TPOAbs and AITD remain largely unknown, we performed GWAS meta-analyses in 18,297 individuals for TPOAb-positivity (1769 TPOAb-positives and 16,528 TPOAb-negatives) and in 12,353 individuals for TPOAb serum levels, with replication in 8,990 individuals. Significant associations (P<5×10⁻⁸) were detected at TPO-rs11675434, ATXN2-rs653178, and BACH2-rs10944479 for TPOAb-positivity, and at TPO-rs11675434, MAGI3-rs1230666, and KALRN-rs2010099 for TPOAb levels. Individual and combined effects (genetic risk scores) of these variants on (subclinical) hypo- and hyperthyroidism, goiter and thyroid cancer were studied. Individuals with a high genetic risk score had, besides an increased risk of TPOAb-positivity (OR: 2.18, 95% CI 1.68–2.81, P = 8.1×10⁻⁸), a higher risk of increased thyroid-stimulating hormone levels (OR: 1.51, 95% CI 1.26–1.82, P = 2.9×10⁻⁶), as well as a decreased risk of goiter (OR: 0.77, 95% CI 0.66–0.89, P = 6.5×10⁻⁴). The MAGI3 and BACH2 variants were associated with an increased risk of hyperthyroidism, which was replicated in an independent cohort of patients with Graves'' disease (OR: 1.37, 95% CI 1.22–1.54, P = 1.2×10⁻⁷ and OR: 1.25, 95% CI 1.12–1.39, P = 6.2×10⁻⁵). The MAGI3 variant was also associated with an increased risk of hypothyroidism (OR: 1.57, 95% CI 1.18–2.10, P = 1.9×10⁻³). This first GWAS meta-analysis for TPOAbs identified five newly associated loci, three of which were also associated with clinical thyroid disease. With these markers we identified a large subgroup in the general population with a substantially increased risk of TPOAbs. The results provide insight into why individuals with thyroid autoimmunity do or do not eventually develop thyroid disease, and these markers may therefore predict which TPOAb-positives are particularly at risk of developing clinical thyroid dysfunction.     

具有谷胱甘肽过氧化物酶活性的含硒单链抗体酶制备

 利用RT PCR从分泌有谷胱甘肽结合部位的单克隆抗体杂交瘤细胞株 2F3中 ,扩增出单抗重链可变区和轻链可变区基因 .经DNA测序后 ,用Linker(Gly4 Ser1) 3 构建成单链抗体 (scFv)表达载体pTMF scFv ,将重组质粒pTMF scFv转化到大肠杆菌BL2 1(DE3) ,实现了单链抗体的高效表达 .表达的单链抗体占菌体总蛋白 2 5%～ 30 % .该重组蛋白以包涵体形式存在 ,分子量为 30kD .经过金属螯合亲和层析纯化、复性和凝胶过滤纯化 ,得到电泳均一的单链抗体 .再经化学诱变 ,得到含硒单链抗体酶 ,其谷胱甘肽过氧化物酶活性为 330 0U μmol.采用荧光滴定法测定了单链抗体对谷胱甘肽的结合常数     

锰过氧化物酶的结构与功能

综述了木素降解的关键酶之一锰过氧化物酶的三维分子结构和催化反应性能,综合概述了通过定点诱变等方法对锰过氧化物酶的结构和功能的研究进展。     

辣根过氧化物酶的结构与作用机制

辣根过氧化物酶是一种重要的酶制剂,它已经有一个多世纪的研究历史了。近几年,有关它的结构、催化中间体、催化机制以及特殊氨基酸残基功能等又有了新的发现。     

Quantitative Determination of a Peanut Anionic Peroxidase by Specific Monoclonal Antibodies

A monoclonal antibody (46-12-C12) for use in a solid-phase enzyme-linkedimmunosorbent assay (ELISA) specific for an anionic peroxidase(APRX) from peanut (Arachis hypogaea L.) suspension cell mediumwas developed. The McAb (IgG₁) had a high affinity (2.77 ? 10¹¹)and specificity for APRX, and showed only weak interaction witha-amylase and virtually no reactivity with other enzymes, suchas MCPRX (peanut), minor CPRX (peanut), peroxidase (horseradish),RuBP case (spinach), -glucosidase (rice), ß-glucosidase(almonds), acid phosphatase (potato), catalase (bovine liver)and glucose-6-phosphatase (yeast). Sample dilution curves werefound to parallel the standard curve. The detection limit was0.002 ? 10^–12 mol APRX. The absorbance was linear at concentrationsbetween 0.004–24 ? 10^–12 mol APRX. Three hundredsamples could be analysed per day by one person, with a semi-automaticperformance. Using this assay, levels of APRX have been determinedin a number of biological extracts of different origin. Key words: Peanut, anionic peroxidase, monoclonal antibody, enzyme-linked immunosorbent assay (ELISA)     

Peroxidase Activity in Linum usitatissimum L.

Peroxidase activity was measured at three stages, from seedlingto maturity, in stem tissue of two genotypes of Linum usitatissimum,and their reciprocal F₁ hybrids. The plants were grown throughoutin growth chambers, allowing close control over the environmentalconditions. There were large and consistent differences betweenthe activities of the parental genotypes, and between dialysedand undialysed extracts. Activities in both parents and theF₁ were expressed on a logarithmic scale. The activity of theF₁ fell, with one exception, between the activities of the twoparents. The relationship of F₁ activity to the mean of theparental activities fluctuated with the stage of growth.     

Production and Preliminary Characterization of Monoclonal Antibodies against Cationic Peanut Peroxidase

Ten monoclonal antibodies (McAbs) have been produced against the cationic peroxidase from peanut suspension cell culture. Eight of these antibodies were found to be of the immunoglobulin (Ig)G₁ subclass and two were of IgA subclass. A combination of competitive enzyme-linked immunosorbent assay, Western blotting analysis, and direct antigen-binding assay revealed that the antibodies are directed against four different epitopes on the cationic peroxidase and the McAbs can be subdivided into four groups. Only group A inhibits peroxidase activity. Group B and D bind equally well to the native and the denatured form of cationic peroxidase, whereas the remaining McAbs react with more or less reduced affinity to the denatured antigen. Group C probably recognizes a conformation-dependent epitope. All the McAbs cross react weakly with the anionic peanut peroxidase, suggesting a structural nonidentity as well as some similarity between these two peroxidase isozymes. Cross reactivities of these McAbs with peroxidases of various plant species were also demonstrated.     

Desmutagenic Activity of Peroxidase on Autoxidized Linolenic Acid

L-Arginine analog-resistant mutants were derived from Bacillus subtilis, Serratia marcescens, Microbacterium ammoniaphilum, Micrococcus sodonensis, Nocardia corynebacteroides, N. rubra, Saccharomyces cerevisiae and Candida tropicalis.The mutants of all species tested produced an appreciable amount of L-arginine. The arginine productivity of SAH4-7, an L-arginine hydroxamate-resistant L-arginine-producer of B. subtilis,increased stepwisely by successively introducing such characters as pyrimidine analog-, histidine analog-, and tryptophan analog-resistance and then increased resistance to arginine analog. The mutant strain finally selected was KY7690 and it produced ca. 17mg per ml of L-arginine.     

Enzymatic Biobleaching of Two Recalcitrant Paper Dyes with Horseradish and Soybean Peroxidase

A stilbene dye (Direct Yellow 11) and a methine dye, Basazol 46L, recalcitrant to common chemical bleaches, were treated with horseradish and soybean peroxidases. Both enzymes were effective at chromophore removal. When compared to laccase in combination with a mediator (ABTS), soybean peroxidase was more effective at oxidative dye removal, especially for the methine dye.     

Identification of an Antigenic Determinant on Anionic Peanut Peroxidase by Monoclonal Antibodies

Two monoclonal antibodies (46–12-C12 and 23–6-C12)raised against anionic peanut peroxidase were found to haveindependent epitope sites. These topographic sites were foundto be located within a tryptic glycopeptide (Atgp) from theanionic isozyme by both indirect and non-competive ELISA andWestern blotting. The Atgp has a M_r equal to 11 000 of which 70% is carbohydrateand the peptide is probably highly hydrophobic as determinedby its high R_F (0.83) value and the amino acid composition.McAb 23–6-C12 recognized a contiguous epitope which encompassedalso the sole N-linked oligosaccharide on the anionic isozyme.That the monoclonal antibody also recognized the oligosaccharideon the -amylase, ß-glucosidase, acid phosphatase,and horse-radish peroxidase may be related to similarities insugars. Sugar removal from the Atgp or from the cross-reactivepeptide of enzymes caused loss of antibody affinity. The monoclonal antibody 46–12-C12 recognized specificallya conformational epitope near the region of the cysteine, tryptophaneand methionine residue on Atgp. Digestion of the anionic isozymeby trypsin resulted in a 40-fold loss of affinity with thismonoclonal antibody. Moreover, treatment of the Atgp with performicacid or trifluoromethane sulphonic acid caused a loss of affinitybetween the treated Atgp and this monoclonal antibody. Key words: Monoclonal antibodies, peanut, anionic peroxidase, glycopeptide, trypsin digest