The molecular heterogeneity of hemocyanin: Structural and functional properties of the 4x6-meric protein of Upogebia pusilla (Crustacea)

The structural properties of the hemocyanin isolated from the Mediterranean mud shrimp, Upogebia pusilla (Decapoda: Thalassinidea), were investigated. Our intent was to make use of the U. pusilla case to perform a structural comparison between crustacean and chelicerate 4x6-meric hemocyanins. The thalassinidean hemocyanin appears similar in size but different in structural organization compared to the chelicerate 4x6-mer. Ultracentrifuge analyses on the purified protein revealed a sedimentation coefficient of 39S, typical of 4x6 hemocyanins. Electron micrographs are in agreement with a model in which four 2x6-meric building blocks are arranged in a tetrahedron-like quaternary structure and not in the quasi-square-planar orientation characteristic of the chelicerate protein. Size-exclusion chromatography-fast protein chromatography analysis showed elevated instability of the protein in absence of divalent ions or at pH values higher than 8.0. This analysis also shows that the dissociation of the U. pusilla 4x6-meric hemocyanin into hexamers occurs without any intermediate 2x6-meric state, in contrast with the dissociation profile of the chelicerate protein exhibiting several dissociation intermediates. The oxygen-binding properties of U. pusilla hemocyanin were studied to disclose possible effects by the typical allosteric effectors that modulate the functional properties of crustacean hemocyanin. A marked Bohr and lactate effect, but no significant influence of urate, on the oxygen affinity of U. pusilla hemocyanin were found.     

Hot and salty: the temperature and salinity preferences of a temperate estuarine shrimp larva, Upogebia pusilla (Decapoda: Thalassinidea)

At a time when global climate changes are forcing life to adapt to a warming and salinity-changing environment, it is essential to understand how future changes in ocean chemistry will affect species. This study evaluates the combined effects of temperature and salinity on survival and development of Upogebia pusilla larvae. Combinations were made from three temperatures (18, 23, and 28°C) and three salinities (15, 25, and 35). Survival, larval duration and megalopa size were compared between treatments. U. pusilla larvae developed optimally in the highest salinity (35) and higher temperatures (23–28°C). Low salinities and temperatures did not support larval survival and development, with salinity being the main restricting factor for survival, while temperature affected mainly the duration of the larval stages. Larvae at higher temperatures (23–28°C) presented a higher development rate but no differences were found in megalopa size.     

Copepods distribution in relation to a Cape Ghir upwelling filament (Moroccan Atlantic coast)

The study of the Cape Ghir upwelling filament (31°N) focalizes to describe the dispersive mechanism, caused by the upwelling. The zooplankton was sampled during five oceanographic cruises conducted between 2008 and 2009. Surface temperature and chlorophyll “a” were also measured along with sampling. The distribution of environmental parameters accused extensions that show the path of the filament. Copepods constitute the largest fraction of zooplankton community and represented by 86 species, majorly dominated by Acartia clausi and Oncaea venusta. A number of species of deep or cold waters have been recorded in the area corresponding to a net resurgence of cold water. The analysis of the copepods distribution allowed to view the path of the filament at different times of the year. The distribution of the species A. clausi, neritic specie was observed in the open ocean, shows a result of this dynamic.     

The fine structure of the frontal filament complex of barnacle larvae (Crustacea: Cirripedia)

Cell and Tissue Research - The frontal filaments comprise two regions, the internal vesicles and the external filaments. Dendrites of extra-optic protocerebral origin pass ventrally from the brain,...     

Biodiversity of Zoobenthos in the Coastal Zone of the South Coast of Crimea (Laspi Bay Area)

Based on data of a1996 benthos survey, the structure of soft bottom zoobenthos of Laspi Bay (South Coast of Crimea, the Black Sea) was examined. One hundred thirty-one species of macrozoobenthos, including 44 molluscan species, 43 annelids, 31 crustaceans and 13 species representing other groups, were recorded. Two biocenoses were distinguished: Chamelea gallina and Mytilus galloprovincialis within the depths 5–52 m. The first biocenosis was presented by two biocenosic complexes. Their structure was characterized using Shannon, Simpson, and Pielou indices. The representativeness of the basic taxonomic groups of the benthos was analyzed. The conclusion of the high species abundance of benthos in Laspi Bay was made. There were recorded changes in structure of the biocenoses, which were manifested in the development of sestonophage filterers (first of all, the mollusc Chamelea gallina) with increasing organic pollution of the coastal water areas of Black sea.     

Vertical migration and advection of bopyrid isopod cryptoniscid larvae in the Gulf of Carpentaria, Australia

To understand the distribution of bopyrid isopods and assesstheir impact on host penaeid prawn populations, studies on factorsaffecting their larval behaviour and dispersal were undertakenThree series of stratified plankton samples were taken in theGulf of Carpentaria at three seasons of the year. The bopyndcryptoniscid larvae migrated nocturnally to the surface andmigrated diurnally to the bottom waters A multiple correlationcoefficient of 0 70 showed that the number of cryptonisci variednegatively with light intensity and positively with the planktonbiomass and the sampled depth. Partial correlation decompositionof the correlation coefficient showed light, depth and biomassto have partial coefficient values of -0 45, 0 43 and 0.28 respectivelyIn the Mornington Island area, a multiple regression analysiscombining depth sampled and the copepod species Acrocalanusgibber and Corycaeus dahli gave a correlation coefficient of0 91 with cryptoniscid abundance However, the largest singlecorrelation coefficient was with Calanopia ethpnca (r = 0.77)which was highly correlated with depth sampled. Estimated advectiondistances were between 80 and 120 km As cryptonisci and prawnlarvae both migrate vertically and also move over similar distances,postlarval prawns can be infected on the nursery grounds bythe bopyrid cryptonisci     

Spatiotemporal Changes in the Macrophytobenthos in the Coastal Zone of Karanskii Nature and Landscape Reserve (Sevastopol,Black Sea)

Biology Bulletin - Abstract—For the first time, the landscape approach was used to conduct a comparative analysis of the macrophytobenthic species diversity and changes in its biomass in the...     

The complete mitochondrial genome of the Japanese mud shrimp Upogebia major (Crustacea, Decapoda)

We determined a full-length sequence of mitochondrial (mt) genome from Upogebia major. This is the first complete mt genome report for infraorder Thalassinidea in Decapoda, Crustacea. Our result showed that U. major generally followed a typical pancrustacean gene order but some tRNA genes showed a very unique gene arrangement such as duplication or translocation. Since none of the complete mt genome sequences in the infraorder Thalassinidea are available yet, this report will provide additional information in relation to mt genome diversity and evolution of the decapods.     

Phytoplankton Fluctuations during an Annual Cycle in the Coastal Lagoon of Cullera (Spain)

The seasonal variation and the vertical distribution of the phytoplanktonic population of the lagoon of Cullera, an elongated coastal lagoon with estuarine circulation of water, has been studied in three sampling stations: mouth, centre and source. Seasonal variation is determined by a marine-freshwater interaction. In winter, the sea influence is important, a marine water wedge of anoxic water arrives at the sampling station located at the source and marine and brackish water species dominate the phytoplankton. Also marine species of zooplankton and fish enter the system, which may then be considered as exploited by the sea. In spring the marine wedge retreats from the source but remains in the centre and mouth, salinity diminishes, vertical mixing persists and phytoplankton is dominated by Cyclotella species. From late spring to autumn the freshwater influence prevails and a sharp stratification of the water is produced in the stations at the mouth and the centre, by means of a steep halocline coincident with an oxycline. The phytoplankton in this period follows a typical succession like those described in freshwater eutrophic lakes. Vertical distribution of phytoplankton is determined by the presence of the oxycline, originated by the marine water wedge, whose depth varies seasonally but which is always present in the mouth and centre of the lagoon; only few species of algae can be found below its level.     

A new species of Hemicyclops (Copepoda, Poecilostomatoida) from burrows of the mud shrimp Upogebia major in an estuarine mud-flat in Tokyo Bay, Japan

A new species of poecilostomatoid copepod, Hemicyclops tanakai n. sp. was collected from burrows of the mud shrimp Upogebia major in an estuarine mud-flat in Tokyo Bay. The new species can be distinguished from its congeners by combination of the following characteristics: setation of the antennule, the segmentation of the antennule, the length–width ratio of the caudal ramus, the ornamentation on the third segment of antenna and the shape of the genital double somite.     

Isolation and characterization of polymorphic microsatellite markers for the brown-headed nuthatch (Sitta pusilla)

Populations of brown-headed nuthatches (Sitta pusilla) are declining throughout the species range. Here we characterize twelve polymorphic microsatellite loci for this species. Analysis of 32 presumably unrelated individuals from a single population revealed an average of 14.9 alleles per locus (range 4–25), an average observed heterozygosity of 0.74 (range 0.52–0.94) and an average polymorphic information content of 0.80 (range 0.57–0.95). We anticipate that these microsatellite markers will be useful for population genetic and behavioral studies on the brown-headed nuthatch and closely related species.     

Genetic Diversity of Algal Viruses Which Lyse the Photosynthetic Picoflagellate Micromonas pusilla (Prasinophyceae)

The genetic similarity among eight clones of Micromonas pusilla virus (MpV) isolated from five geographic locations was measured by DNA hybridization. Our objective was to explore the existence of genetically distinct populations of MpV by comparing the similarity among MpVs isolated from a single water sample to the similarity among viruses isolated from geographically distant locations. The highest and lowest similarities we observed were 70% (plusmn) 1.1% (mean (plusmn) standard error [SE], n = 3) for virus strains SP1 and SP2 isolated from a California coastal water sample and 13% (plusmn) 1.9% for strains SP2 and PB6; the latter was isolated from New York estuarine water. However, the similarity between MpV isolated from a single water sample was not always greater than the similarity between viruses isolated from different locations. Viruses PB7 and PB8 were isolated from a single New York estuarine sample but were only 16% (plusmn) 0.5% similar, whereas PB7 was quite similar (43% (plusmn) 2.9%) to PL1, a virus from Texas coastal water. Overall, the similarity among MpVs isolated from a single geographic location, 34% (plusmn) 12.6% (mean (plusmn) SE, n = 4), was not significantly different from the similarity among MpVs isolated from geographically distant locations, 26.6% (plusmn) 2.7% (mean (plusmn) SE, n = 24) (P = 0.92, Mann-Whitney U test). Clones of MpV were more similar to each other than they were to the related algal virus PBCV-1, and three groups of MpVs consisting of (i) PL1, SG1, PB6, and PB7, (ii) PB8, and (iii) GM1, SP1, and SP2 were resolved. The genetic variation among MpVs isolated from a single water sample was as large as the variation between viruses isolated from different oceans. If MpVs within a geographic location share genetic characteristics not shared with MpVs from geographically distant locations, this was not reflected in the overall similarity of their genomes.     

On the Potential of Surfers to Monitor Environmental Indicators in the Coastal Zone

The social and economic benefits of the coastal zone make it one of the most treasured environments on our planet. Yet it is vulnerable to increasing anthropogenic pressure and climate change. Coastal management aims to mitigate these pressures while augmenting the socio-economic benefits the coastal region has to offer. However, coastal management is challenged by inadequate sampling of key environmental indicators, partly due to issues relating to cost of data collection. Here, we investigate the use of recreational surfers as platforms to improve sampling coverage of environmental indicators in the coastal zone. We equipped a recreational surfer, based in the south west United Kingdom (UK), with a temperature sensor and Global Positioning System (GPS) device that they used when surfing for a period of one year (85 surfing sessions). The temperature sensor was used to derive estimates of sea-surface temperature (SST), an important environmental indicator, and the GPS device used to provide sample location and to extract information on surfer performance. SST data acquired by the surfer were compared with data from an oceanographic station in the south west UK and with satellite observations. Our results demonstrate: (i) high-quality SST data can be acquired by surfers using low cost sensors; and (ii) GPS data can provide information on surfing performance that may help motivate data collection by surfers. Using recent estimates of the UK surfing population, and frequency of surfer participation, we speculate around 40 million measurements on environmental indicators per year could be acquired at the UK coastline by surfers. This quantity of data is likely to enhance coastal monitoring and aid UK coastal management. Considering surfing is a world-wide sport, our results have global implications and the approach could be expanded to other popular marine recreational activities for coastal monitoring of environmental indicators.     

A waterborne behavioral cue for the actinotroch larva of Phoronis pallida (Phoronida) produced by Upogebia pugettensis (Decapoda: Thalassinidea)

Phoronis pallida (Phoronida) occurs as a commensal within the burrow of Upogebia pugettensis (Decapoda: Thalassinidea). Upogebia-conditioned seawater (UCSW) induced an exploratory swimming behavior in competent larvae of P. pallida in a dosage-dependent manner. This behavior included a significant increase in swimming speed that was directed downward, along with the repeated probing of the bottom with the sensory portion of the oral hood. The waterborne cue from the shrimp was present in the gut effluent, and the swimming behavior was not the result of the elevated ammonia concentration. Molecular weight separation of the UCSW estimated that the cue was between 10 and 50 kDa. Enzymatic treatments showed that the cue's activity could be eliminated by arginase and significantly reduced by lipase. Competent larvae were also induced to metamorphose when exposed to 20 mM CsCl for 30 min. Larvae did not respond to CsCl when cultured about 4 weeks past the onset of competence. Compared with actinotroch larvae of other phoronid species, P. pallida larvae exhibit greater behavioral specificity and neuronal differences within the hood sense organ. These anatomical and behavioral differences may have been maintained through a coevolutionary process among P. pallida and species of thalassinid shrimps that share Upogebia life-history characteristics.     

Cenomanian ostracods of the Tarfaya upwelling region (Morocco) as palaeoenvironmental indicators

Changes in ostracod occurrence and assemblage composition from the Cenomanian of the Tarfaya Basin (Morocco) are investigated in order to evaluate their potential for palaeoenvironmental analyses of Cretaceous upwelling regions. Most frequent genera found at Tarfaya are Brachycythere, Veenia, Reticulocosta, Cytherelloidea, and Nigeroloxoconcha. Assemblages found at Tarfaya are characterised by low diversities. Successive appearance of assemblages dominated by these genera represents a depth gradient, corresponding to the results of the performed correspondence analysis. Ostracods are most abundant if associated either with moderate food supply and sufficient oxygenation or high food supply and high oxygenation. They disappear almost completely during permanent oxygen deficiency and are, contrary to benthic foraminifera, less frequent during periods of enhanced food supply. Species of the genus Brachycythere appear to be more sensitive to oxygen deficiency than other genera. Reticulocosta and Cytherelloidea avoid strong food pulses and are probably better adapted to oxygen depletion than other genera. Ostracods appear to be powerful environmental indicators for sea-level changes, oxygenation or food supply in Late Cretaceous upwelling settings, such as in the Cenomanian Tarfaya Basin.