厦门湾中华白海豚潜在生态廊道识别及人类活动干扰评估

生态廊道具有维持或恢复生态连通性的功能,对于连接生物栖息地、保护物种多样性具有重要意义。现有的生态廊道研究主要集中于陆地,而海洋生态系统具有水体广泛连通、缺乏直观的景观斑块等特点,导致海洋生态廊道的研究成为长期以来的科学难题。以栖息地位于厦门湾的国家一级保护动物中华白海豚(Sousa chinensis)为对象,尝试基于物种分布模型和最小成本路径分析法建立海洋生态廊道的识别方法。研究采用物种分布模型识别厦门湾内中华白海豚的适宜生境分布区和节点,并利用模型产出的生境适宜性结果生成海洋中的阻力表面,模拟计算节点与节点间在阻力表面上的最小成本路径,从而生成物种扩散网络。研究结果显示,厦门湾中华白海豚的分布主要受到航道距离、到岸线距离和叶绿素浓度三项因素的影响,主要适宜生境位于西海域至九龙江口和大嶝海域。潜在的核心生态廊道面积93.19km²,次级生态廊道面积170.41km²,九龙江口-鼓浪屿南侧-黄厝-大小嶝岛沿线可能是厦门湾中华白海豚的主要迁移路线。在此基础上,从用海空间重叠和桥梁影响两方面开展了人类活动对廊道的干扰评估。评估结果显示旅游活动和...     

Spatial variability in distribution and prevalence of skeletal eroding band and brown band disease in Faafu Atoll,Maldives

Indo-Pacific coral diseases are currently considered one of the 15 globally important threats requiring conservation attention. The coral reefs of the Maldives are experiencing a local decline, with the presence of some coral diseases reported only recently. We investigated the spatial variability in prevalence and distribution of two protozoan diseases, skeletal eroding band (SEB) and brown band disease (BrB), in three islands in the Faafu Atoll: an inhabited island (Magoodhoo), an uninhabited island (Adanga) and a resort island (Filitheyo). Our study revealed a low level of mean disease prevalence for both diseases (<1 %), with Magoodhoo and Adanga being the most affected by BrB and SEB, respectively. However, our preliminary temporal investigations revealed an increment of both coral diseases in Adanga during the last 4 years. Furthermore, we observed different spatial patterns between the two diseases, with SEB positively correlated to dead coral coverage. Finally, Acropora was the most affected coral genus, hosting both coral diseases. Considering that Acropora is the most abundant genus in the archipelago and many other areas in the Indo-Pacific, this finding highlights the need for particular conservation efforts for this genus. These results represent just a first step in the assessment of Maldivian coral disease epidemiology, and more detailed analyses of regional differences in diseases prevalence are needed to further explore their impacts on Maldivian coral reefs.     

<Emphasis Type="Italic">Caulerpa</Emphasis> consumption,nutritional value and farming in the Indo-Pacific region

In the Indo-Pacific region, several species of the green seaweed genus Caulerpa Lamouroux (1809) are very popular as human food because of their delicious taste and crunchy texture, which are pleasing to the palate, and because of their health benefits: Caulerpa contains proteins, fiber, minerals, vitamins, polyunsaturated fatty acids, and bioactive anti-oxidants. The consumption of these seaweeds is well established in local traditions and, for this reason, several seaweed farms have been established, or are under assessment, with a view to providing additional sources of income for local communities and to secure their livelihoods. Currently Caulerpa species are mostly collected from the wild and sold on the markets. However, farms can use a range of culture techniques such as bottom planting, off-bottom culture, floating long lines, or land-based raceways. This paper presents an overview of the traditional consumption and nutritional values of Caulerpa in the Indo-Pacific region and the different farming methods used for Caulerpa culture.     

BIOGEOGRAPHY OF INDO-PACIFIC CICADOIDEA: A TENTATIVE RECOGNITION OF AREAS OF ENDEMISM

Abstract— The biogeography of the cicadas of the Indo-Pacific is discussed in relation to paleogeography and compared with distribution patterns found in other groups of organisms. The cicadas show a low degree of endemism in the mainland of southeast Asia and the Greater Sunda Islands, and a high degree of endemism in Sulawesi, New Guinea, and the islands of the west Pacific. The biogeography of the cicadas of these regions with high endemism is analyzed for four groups: the subtribe Cosmopsaltriaria, the tribe Prasiini, the genus Baeturia , and the Pacific Cryptotympanini. A review of the paleogeography of the Indo-Pacific, specifying the relevant barriers, island arcs, and land connections, is provided. The recognized areas of endemism are tentatively related to the geological history of the Indo-Pacific. Areas of endemism are the Sulawesi Arcs and the Outer and Inner Melanesian Arcs. New Guinea appears to be a composite of areas of different origin: the central mountains of the Inner Melanesian Arc, the north-coast mountains of the Outer Melanesian Arc, and the Vogelkop area, which is of uncertain origin. The Papuan Peninsula of New Guinea seems to be a zone of overlap between the Outer and the Inner Melanesian Arcs. The Pacific archipelagos of the Outer Melanesian Arcs (viz., the Bismarck Archipelago, Solomon Islands, Vanuatu, and the Fiji, Tonga, and Samoa Islands) represent distinct areas of endemism. The taxon-area cladogram of the Cosmopsaltriaria gives some indication of the relationships among the areas of endemism. The discussion is extended to groups of bats, frogs, psocids, butterflies, and moths of the Melanesian Arcs, as their patterns of distribution seem equally relevant for the recognition of the biogeographic interrelationships in the Indo-Pacific.     

The origin and evolution of seahorses (genus Hippocampus): a phylogenetic study using the cytochrome b gene of mitochondrial DNA

Phylogenetic relationships among 93 specimens of 22 species of seahorses (genus Hippocampus) from the Atlantic and Indo-Pacific Oceans were analysed using cytochrome b gene sequence data. A maximum sequence divergence of 23.2% (Kimura 2-parameter model) suggests a pre-Tethyan origin for the genus. Despite a greater number of seahorse species in the Indo-Pacific than in the Atlantic Ocean, there was no compelling genetic evidence to support an Indo-Pacific origin for the genus Hippocampus. The phylogenetic data suggest that high diversity in the Indo-Pacific results from speciation events dating from the Pleistocene to the Miocene, or earlier. Both vicariance and dispersal events in structuring the current global distribution of seahorses. The results suggested that several species designations need re-evaluating, and further phylogeographic studies are required to determine patterns and processes of seahorse dispersal.     

Global diversity patterns of larger benthic foraminifera under future climate change

Global warming threatens the viability of tropical coral reefs and associated marine calcifiers, including symbiont-bearing larger benthic foraminifera (LBF). The impacts of current climate change on LBF are debated because they were particularly diverse and abundant during past warm periods. Studies on the responses of selected LBF species to changing environmental conditions reveal varying results. Based on a comprehensive review of the scientific literature on LBF species occurrences, we applied species distribution modeling using Maxent to estimate present-day and future species richness patterns on a global scale for the time periods 2040–2050 and 2090–2100. For our future projections, we focus on Representative Concentration Pathway 6.0 from the Intergovernmental Panel on Climate Change, which projects mean surface temperature changes of +2.2°C by the year 2100. Our results suggest that species richness in the Central Indo-Pacific is two to three times higher than in the Bahamian ecoregion, which we have identified as the present-day center of LBF diversity in the Atlantic. Our future predictions project a dramatic temperature-driven decline in low-latitude species richness and an increasing widening bimodal latitudinal pattern of species diversity. While the central Indo-Pacific, now the stronghold of LBF diversity, is expected to be most pushed outside of the currently realized niches of most species, refugia may be largely preserved in the Atlantic. LBF species will face large-scale non-analogous climatic conditions compared to currently realized climate space in the near future, as reflected in the extensive areas of extrapolation, particularly in the Indo-Pacific. Our study supports hypotheses that species richness and biogeographic patterns of LBF will fundamentally change under future climate conditions, possibly initiating a faunal turnover by the late 21st century.     

Nuclear and mitochondrial DNA analyses reveal four genetically separated breeding units of the swordfish

Variants in the calmodulin gene intron 4 ( CaM ) and the mtDNA D-loop region ( D-loop ) detected by RFLP and nucleotide sequence analyses were used to investigate the global stock structure of the swordfish Xiphias gladius . Two alleles ( A and B ) were observed at the CaM locus among 8 samples (Mediterranean, Tarifa, four Atlantic areas, Indian and Pacific oceans) comprising 567 individuals. Genotype distributions at this locus within samples were in accordance with Hardy-Weinberg equilibrium. Significant differences in allele frequencies were observed between Mediterranean-Northwest Atlantic samples ( A =0·347–0·493) and those from tropical Atlantic and Indo-Pacific ( A =0·81–1). In the D-loop region, Alu I and Rsa I digestions detected 4 ( A - D ) and 8 ( A - H ) genotypes, respectively. The frequency of type C for Alu I was lower in Indo-Pacific samples (0·2) than Atlantic and Mediterranean samples (0·365–0·643). Frequency of type C for Rsa I increased from the Pacific (0·398) to the Northwest Atlantic (0·698) and Tarifa (0·949) samples, and the Mediterranean sample was fixed for type C . These samples were classified into three groups (Mediterranean-Tarifa, Atlantic and Indo-Pacific) using a heterogeneity test of mtDNA genotype distributions. Combined analysis of the CaM and D-loop loci indicated that there are at least four breeding units: Mediterranean, northwestern Atlantic, tropical to South Atlantic, and Indo-Pacific.     

Phylogeography of <Emphasis Type="Italic">Eleotris fusca</Emphasis> (Teleostei: Gobioidei: Eleotridae) in the Indo-Pacific area reveals a cryptic species in the Indian Ocean

Indo-Pacific insular freshwater systems are mainly dominated by amphidromous species. Eleotris fusca is a widespread one, its life cycle is characterised by a marine pelagic larval phase allowing the species to disperse in the ocean and then to recruit to remote island rivers. In the present study, the population structure of E. fusca over its Indo-Pacific distribution range (Western Indian Ocean to French Polynesia, Pacific Ocean) was evaluated. We analysed a section of mitochondrial COI of 557 individuals sampled from 28 islands to visualise the population structure. Haplotypes diversity (Hd) was between 0.458 and 1 and, nucleotide diversity (π) was between 0.001 and 0.02. Two distinct genetic groups appeared, one in the Indian Ocean and the other in the Pacific Ocean (F_ST mean?=?0.901; 5.2% average divergence). Given these results, complete mitogenomes (mtDNA) were sequenced and combined with the nuclear Rhodopsin (Rh) gene for a subset of individuals. The two phylogenetic trees based on each analysis showed the same genetic pattern: two different groups belonging to the Indian and the Pacific oceans (6.6 and 1.6% of divergence for mtDNA and Rh gene respectively), which supported species level differentiation. These analyses revealed the presence of two sister species confounded until present under the name of Eleotris fusca. One of them is cryptic and endemic of the Indian Ocean and the other one is the true E. fusca, which keeps, nevertheless, its status of widespread species.     

POPULATION SIZE, DISTRIBUTION, AND BEHAVIOR OF INDO-PACIFIC BOTTLENOSE (TURSIOPS ADUNCUS) AND HUMPBACK (SOUSA CHINENSIS) DOLPHINS OFF THE SOUTH COAST OF ZANZIBAR

Indo-Pacific bottlenose ( Tursiops aduncus ) and humpback dolphins ( Sousa chinensis ) off the south coast of Zanzibar, East Africa, have been subject to both direct and indirect takes as well as disturbance from local dolphin tourism during the last decade. Meanwhile, little or no information on population parameters exists for these animals. In order to assess the anthropogenic threats, a study was conducted between 1999 and 2002 to determine population sizes, distribution, and behavior of these animals. Population sizes were calculated for each year using mark-recapture methods applied to photo-identification data. The estimates ranged between 136 and 179 for the bottlenose dolphins and between 58 and 65 for the humpback dolphins in the calculated 26 km² study area. Patterns in distribution and behavior were investigated using image and spatial statistic software on data from boat surveys. Analyses of spatial densities showed that both species concentrated their activities to smaller areas (2%–11.5%) within the study area. When the study results were considered in light of the anthropogenic threats, it was clear that immediate conservation measures were needed. This is critical if the negative impact on the species is to be minimized and the dolphins are to continue to represent a socioeconomic resource in the region.     

Cryptic species of the gobioid paedomorphic genus <Emphasis Type="Italic">Schindleria</Emphasis> from Palau,Western Pacific Ocean

The extremely paedomorphic fish Schindleria (Gobioidei, Schindleriidae) is widely distributed in the Indo-Pacific Ocean, inhabiting coral reef lagoons. At least 21 cryptic species (Schindleria spp. 1–21) have been discovered around the Ryukyu and Ogasawara Islands. As a first step in extending the survey areas to the entire Indo-Pacific Ocean, the present study collected and examined Schindleria in Palau, located approximately 2,200 km from the Ryukyu Islands, for any cryptic diversity. Molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences of 71 specimens revealed four new cryptic species of Schindleria spp. 22–25 (Palau 1–4) in Palau.     

Potential consequences of climate change for primary production and fish production in large marine ecosystems

Existing methods to predict the effects of climate change on the biomass and production of marine communities are predicated on modelling the interactions and dynamics of individual species, a very challenging approach when interactions and distributions are changing and little is known about the ecological mechanisms driving the responses of many species. An informative parallel approach is to develop size-based methods. These capture the properties of food webs that describe energy flux and production at a particular size, independent of species'' ecology. We couple a physical–biogeochemical model with a dynamic, size-based food web model to predict the future effects of climate change on fish biomass and production in 11 large regional shelf seas, with and without fishing effects. Changes in potential fish production are shown to most strongly mirror changes in phytoplankton production. We project declines of 30–60% in potential fish production across some important areas of tropical shelf and upwelling seas, most notably in the eastern Indo-Pacific, the northern Humboldt and the North Canary Current. Conversely, in some areas of the high latitude shelf seas, the production of pelagic predators was projected to increase by 28–89%.     

Indo-Pacific and Atlantic spurs and grooves revisited: the possible effects of different Holocene sea-level history,exposure, and reef accretion rate in the shallow fore reef

Shallow fore-reef areas worldwide are usually characterized by spurs and grooves. A comparison of examples from the three world oceans suggests that Indo-Pacific spurs and grooves are shaped predominantly by erosion, whereas western Atlantic spur and groove systems are largely a product of constructive processes. I propose that this difference is caused by regional differences in Holocene sea-level change, which controlled exposure to waves and currents, and reef-accretion rates. The transgressive–regressive sea-level curve in the Indo-Pacific realm, i.e., the Mid-to-Late Holocene sea-level fall in these areas has maintained high-energy conditions in the shallow fore reef. Higher exposure to waves and currents favors erosion and leads to a dominance of crustose coralline algae that have relatively slow growth rates. In the western Atlantic, the transgressive Holocene sea level has caused Mid-to-Late Holocene deepening and has maintained accommodation space for reef accretion. Fast-growing acroporid corals thrive under lower exposure and are more common than coralline algae. The fossil record of the spur and groove system is rather poor, which is probably a consequence of the need of excellent, three-dimensional outcrops for identification.     

PHYLOGENY AND BIOGEOGRAPHY OF CONDEEUM GROUP (PROTURA: PROTENTOMIDAE)

Abstract  Using the Hennig 86 phylogenetic analysis program to analyse the taxa in genera related to Condeellum , the phylogenetic relationships among the species are schemed on the basis of potential synapomorphies of the adults, represented by 16 characters. The character evolution and the route of dispersal are also discussed. The cladistic biogeographic analysis is performed. The basal taxon Condeellum exhibits an Indo-Pacific distribution and the sister group Neocondeellum species exhibit a collective Oriental and Holarctic distribution. The distribution patterns and the vicariance events occurred in those areas are hypothesized.     

"Species" radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transition

Endosymbiotic dinoflagellates, or "zooxanthellae," are required for the survival of a diverse community of invertebrates that construct and dominate shallow, tropical coral reef ecosystems. Molecular systematics applied to this once understudied symbiont partner, Symbiodinium spp., divide the group into divergent lineages or subgeneric "clades." Within each clade, numerous closely related "types," or species, exhibit distinctive host taxon, geographic, and/or environmental distributions. This diversity is greatest in clade C, which dominates the Indo-Pacific host fauna and shares dominance in the Atlantic-Caribbean with clade B. Two "living" ancestors in this group, C1 and C3, are common to both the Indo-Pacific and Atlantic-Caribbean. With these exceptions, each ocean possesses a diverse clade C assemblage that appears to have independently evolved (adaptively radiated) through host specialization and allopatric differentiation. This phylogeographic evidence suggests that a worldwide selective sweep of C1/C3, or their progenitor, must have occurred before both oceans separated. The probable timing of this event corresponds with the major climactic changes and low CO(2) levels of the late Miocene and/or early Pliocene. Subsequent bursts of diversification have proceeded in each ocean since this transition. An ecoevolutionary expansion to numerous and taxonomically diverse hosts by a select host-generalist symbiont followed by the onset of rapid diversification suggests a radical process through which coral-algal symbioses respond and persist through the vicissitudes of planetary climate change.     

康蚖群的系统发生和生物地理学的研究(原尾目:始蚖科)(英文)

应用HENNIG86系统发生分析程序,选择出成虫的有代表性的16个共同衍征,分析了与康蚖属相关各属的各个种类,得出了该类群的相关系统树。同时对特征的演化以及其扩散途径等也进行了讨论。文中还应用Page 1993的COMPONENT程序进行了生物地理学的分析;得到种类—地区支序图。其中康蚖属表现为典型的印度—太平洋分布型,而其姐妹群新康蚖属则兼有东洋区和全北区的分布型。至于分布地区的相互关系和在这些地区的分衍替代事件的发生等问题也作了初步的假想。     

DNA barcodes for the pipefish genus Corythoichthys (Actinopterygii: Syngnathiformes) from the Indian Ocean provide insights into cryptic diversity

The syngnathiform genus Corythoichthys comprises a group of taxonomically complex, tail-brooding (Syngnathinae) pipefishes widely distributed in the Indo-Pacific region. Due to the presence of overlapping interspecific morphological characters, reliable taxonomic information on Corythoichthys is still lacking. Using 52 CO1 sequences, including seven newly generated, a phylogenetic analysis was carried out to understand the genetic diversity, distribution and ‘species groups’ within the genus Corythoichthys. Species delimitation using Automatic Barcode Gap Discovery (ABGD) analysis confirmed the presence of 13 species which include ‘species-complexes’ previously considered as a single taxon. Our results revealed the presence of three species groups, ‘C. amplexus’, ‘C. conspicillatus’ and ‘C. haematopterus’ and four unidentified/undescribed species in the wider Indo-Pacific realm. Interestingly, 60 sequences and a mitogenome identified as Corythoichthys in GenBank are misidentified at the genus level. Based on our findings, we suggest that the taxonomy and systematics of Corythoichthys need to be re-examined and validated using integrative methods, and care should be taken while selecting specimens for genetic studies.     

A role for nonphysical barriers to gene flow in the diversification of a highly vagile seabird, the masked booby (Sula dactylatra)

To test the hypothesis that nonphysical barriers to gene flow play a role in the divergence of low-latitude seabird populations, we applied phylogeographic methods to mitochondrial control region sequence variation in a global sample of masked boobies (Sula dactylatra). In accord with previous studies, we found that Indo-Pacific and Atlantic haplotypes form two divergent lineages, excluding one haplotype previously attributed to secondary contact between the Indian Ocean and the Caribbean Sea. Within the Indo-Pacific and the Atlantic, we found a relatively large number of haplotypes, many of which were unique to a single population. Although haplotypes from most populations were found in more than one higher-level clade, nested clade analysis revealed a significant association between clades and geography for the majority of higher-level clades, most often interpreted as a consequence of isolation by distance. We found low levels of gene flow within Indo-Pacific and Atlantic populations, and a significant correlation between gene flow and geographical distance among Indo-Pacific populations. We estimate that Indo-Pacific masked boobies experienced rapid population growth approximately 180,000 years ago and that the majority of Indo-Pacific and Atlantic populations diverged within the last approximately 115,000 years. These combined data suggest that the predominant pattern between Indo-Pacific and Atlantic populations is long-term isolation by physical barriers to gene flow. In contrast, populations within these regions appear to have diverged despite few obvious physical barriers to gene flow, perhaps as a consequence of limited natal dispersal combined with local adaptation and/or genetic drift.     

Taking a detour: invasion of an octocoral into the Tropical Eastern Pacific

The tropical snowflake octocoral Carijoa riisei, which is thought to be native to the Indo-Pacific biogeographical region, has been increasingly reported from the Colombian Tropical Eastern Pacific (TEP) over the past two decades. Massive mortalities of native octocorals, particularly in Pacifigorgia spp. and Muricea spp., were observed due to C. riisei overgrowth. However, the area of origin of TEP C. riisei remains unknown and its potential invasive status has not been addressed yet. We evaluated geographical scenarios for the colonization of the Colombian TEP by conducting phylogeographical analyses based on nuclear and mitochondrial sequences of 306 individual specimens from across the species’ (native/non-native) range and applying hypothesis-specific operational criteria. Additionally, we assessed whether C. riisei has to be considered an invasive species based on the previously proposed ‘unified framework for biological invasions’. Our results showed relatively high genetic differentiation between Colombian TEP populations, on the one side, and Indo-Pacific and Hawaiian populations, on the other side. In contrast, we could not identify genetic differentiation and significant isolation by distance (IBD) between Colombian TEP and Tropical Atlantic populations. C. riisei might have been introduced from the Atlantic into the Colombian TEP, possibly via the Panama Canal. Based on the criteria of the ‘unified framework for biological invasions’, we also conclude that this octocoral constitutes an invasive species. Our study may serve as a basis for establishing strategies to protect native species from one of the very few invasive coral species worldwide.     

胶州湾潮间带生态学的研究——1.岩石岸潮间带

胶州湾是我国北方沿海自然环境条件比较良好的内湾。湾内有十余条河流,大量的营养物质随河水携带进入滩涂和近岸浅海水域,为生物的栖息生存和繁殖发育提供了优越的条件。在栖息的生物中有不少是具有重要经济意义的种类。如:中国对虾、贻贝、鲍鱼、牡蛎、紫菜等等都是资源丰富可供捕捞或养殖,并为群众所喜食的水产品。这就为发展滩涂和