A molecular dynamics investigation of buckling behaviour of hydrogenated graphene

Molecular dynamics simulations have been performed to characterise the stability behaviour of graphene nanoribbons having different hydrogen coverage, subject to a uniaxial compressive load. The temperature is set at a very low value to circumvent the contribution of thermal agitations. The results show that hydrogen coverage promotes to a rapid drop in the strain of buckling onset due to the effects of easy rotation of newly unsupported sp³ bonds. Furthermore, we have also found a critical value of the hydrogen adsorption above which the declining trend in the stability behaviour of hydrogenated graphene nanoribbons is reversed.     

Buckling analysis of defective cross-linked functionalized single- and double-walled carbon nanotubes with polyethylene chains using molecular dynamics simulations

Functionalized carbon nanotubes (CNTs) can be used for improving the mechanical properties and load transfer in nanocomposites. In this research, the buckling behavior of perfect and defective cross-linked functionalized CNTs with polyethylene (PE) chains is studied employing molecular dynamics (MD) simulations. Two different configurations with the consideration of vacancy defects, namely mapped and wrapped, are selected. According to the results, critical buckling force of cross-linked functionalized CNTs with PE chains increases as compared to pure CNTs, especially in the case of double-walled carbon nanotubes (DWCNTs). By contrast, it is demonstrated that critical strain of cross-linked functionalized CNTs decreases as compared to that of pristine CNTs. Also, it is observed that increasing the weight percentage leads to the higher increase and the decrease in critical buckling force and strain of cross-linked functionalized CNTs, respectively. Moreover, the presence of defect considerably reduces both critical buckling force and strain of cross-linked functionalized CNTs. Finally, it is shown that the critical buckling strain is more sensitive to the presence of defects as compared to critical buckling force.     

Self-assembly of two-patch particles in solution: a Brownian dynamics simulation study

We study the self-assembly behaviour of two-patch particles with D_∞h symmetry by using Brownian dynamics simulations. The self-assembly process of two-patch particles with diverse patch coverage in two selective solvent conditions is investigated. The patchy particles in a solvent that is bad for patches but good for matrix form linear thread-like structures with low patch coverage, whereas they form 3D network structures with relatively high patch coverage on surface. For patchy particles in a solvent which is good for patches but bad for body, monolayer structures are obtained at high patch coverage, and some cluster structures emerge when surface patch coverage is low.     

The Effect of Collagenase on the Critical Buckling Pressure of Arteries^*

The stability of arteries is essential to normal arterial functions and loss of stability can lead to arterial tortuosity and kinking. Collagen is a main extracellular matrix component that modulates the mechanical properties of arteries and collagen degradation at pathological conditions weakens the mechanical strength of arteries. However, the effects of collagen degradation on the mechanical stability of arteries are unclear. The objective of this study was to investigate the effects of collagen degradation on the critical buckling pressure of arteries. Arterial specimens were subjected to pressurized inflation testing and fitted with nonlinear thick-walled cylindrical model equations to determine their stress strain relationships. The arteries were then tested for the critical buckling pressure at a set of axial stretch ratios. Then, arteries were divided into three groups and treated with Type III collagenase at three different concentrations (64, 128, and 400U/ml). Mechanical properties and buckling pressures of the arteries were determined after collagenase treatment. Additionally, the theoretical buckling pressures were also determined using a buckling equation. Our results demonstrated that the buckling pressure of arteries was lower after collagenase treatment. The difference between pre- and post- treatment was statistically significant for the highest concentration of 400U/ml but not at the lower concentrations. The buckling equation was found to yield a fair estimation to the experimental critical pressure measurements. These results shed light on the role of matrix remodeling on the mechanical stability of arteries and developments of tortuous arteries.     

The effect of collagenase on the critical buckling pressure of arteries

The stability of arteries is essential to normal arterial functions and loss of stability can lead to arterial tortuosity and kinking. Collagen is a main extracellular matrix component that modulates the mechanical properties of arteries and collagen degradation at pathological conditions weakens the mechanical strength of arteries. However, the effects of collagen degradation on the mechanical stability of arteries are unclear. The objective of this study was to investigate the effects of collagen degradation on the critical buckling pressure of arteries. Arterial specimens were subjected to pressurized inflation testing and fitted with nonlinear thick-walled cylindrical model equations to determine their stress strain relationships. The arteries were then tested for the critical buckling pressure at a set of axial stretch ratios. Then, arteries were divided into three groups and treated with Type III collagenase at three different concentrations (64, 128, and 400 U/ml). Mechanical properties and buckling pressures of the arteries were determined after collagenase treatment. Additionally, the theoretical buckling pressures were also determined using a buckling equation. Our results demonstrated that the buckling pressure of arteries was lower after collagenase treatment. The difference between pre- and post- treatment was statistically significant for the highest concentration of 400U/ml but not at the lower concentrations. The buckling equation was found to yield a fair estimation to the experimental critical pressure measurements. These results shed light on the role of matrix remodeling on the mechanical stability of arteries and developments of tortuous arteries.     

Effects of the cross-linkers on the buckling of microtubules in cells

In cells, the protein cross-linkers lead to a distinct buckling behavior of microtubules (MTs) different from the buckling of individual MTs. This paper thus aims to examine this issue via the molecular structural mechanics (MSM) simulations. The transition of buckling responses was captured as the two-dimensional-linkers were replaced by the three-dimensional (3D) ones. Then, the effects of the radial orientation and the axial density of the 3D-linkers were examined, showing that more uniform distribution of the radial orientation leads to the higher critical load with 3D buckling modes, while the inhomogeneity of the axial density results in the localized buckling patterns. The results demonstrated the important role of the cross-linker in regulating MT stiffness, revealed the physics of the experimentally observed localized buckling and these results will pave the way to a new multi-component mechanics model for whole cells.     

Adsorption and desorption surface dynamics of gaseous adsorbate on silicate-1 by molecular dynamics simulation

The dynamics of adsorption and desorption of gaseous molecules on the external surface of a crystal and a membrane of zeolite silicate-1 is investigated by molecular dynamics simulation. The gases are argon and three hydrocarbons, n-heptane, n-butane and ethylene. The sticking coefficient and the desorption coefficient are calculated for different coverages. The results clearly show that the desorption coefficients increase with the coverage contrary to the sticking coefficients. To have a better insight in the process, the desorption and adsorption time are computed, they are very similar and they show an increase with the coverage except for n-heptane which exhibit a specific decreasing behaviour at high loading.     

Structural stability and buckling analysis of a series of carbon nanotorus using molecular dynamics simulations

Based on molecular dynamics (MD) simulations, the buckling analysis of a perfect carbon nanotorus is presented herein. First of all, the minimum length of single-walled carbon nanotubes (SWCNTs) with different radii is determined at which perfect toroidal CNTs can be formed without any ripple at the inner side of the rings. According to the results, by increasing the radius of SWCNT (r), the radius of its corresponding perfect nanotorus (R) increases. Also, for SWCNTs with various lengths, it is found that the buckling force and strain of related carbon nanotoruses increase by increasing R/r. In addition, as the perfect toroidal CNTs are arranged vertically in a column form in accordance with two different schemes, the effects of increasing the radius (R) and the number of carbon nanotoruses (the height of the column made by nanotoruses) on the buckling force and strain are investigated. Based on the results, as a fixed number of carbon nanotoruses with the same radius are arranged vertically in the column form, the buckling force and strain increase by increasing R/r. By contrast, increasing the height of the column made by carbon nanotoruses with similar radius leads to the reduction of buckling force and strain.     

The behaviour of roots encountering cracks in soil

Summary It is shown that probabilities of root penetration across cracks in soil can be calculated effectively using a mathematical model involving root stress and soil distributions and penetrometer/root stress ratios. Penetration criteria are developed, and it is found that the effective penetrometer/root stress ratios take values of about 4 for crack widths smaller than about 2 mm and about 8 for wider cracks. Root swelling does not appear to contribute significantly to the probability of root penetration through any effect on root buckling stress. Suggestions are made for further work on the effects of soil structure and strength on root behaviour.     

How to determine sapling buckling risk with only a few measurements

Tree buckling risk (actual height/critical buckling height) is an important biomechanical trait of plant growth strategies, and one that contributes to species coexistence. To estimate the diversity of this trait among wide samples, a method that minimizes damage to the plants is necessary. On the basis of the rarely used, complete version of Greenhill's model (1881, Proceedings of the Cambridge Philosophical Society 4(2): 65-73), we precisely measured all the necessary parameters on a sample of 236 saplings of 16 species. Then, using sensitivity (variance) analysis, regressions between successive models for risk factors and species ranks and the use of these models on samples of self- and nonself-supporting saplings, we tested different degrees of simplification up to the most simple and widely used formula that assumes that the tree is a cylindrical homogeneous pole. The size factor had the greatest effect on buckling risk, followed by the form factor and the modulus of elasticity of the wood. Therefore, estimates of buckling risk must consider not only the wood properties but especially the form factor. Finally, we proposed a simple but accurate method of assessing tree buckling risk that is applicable to a wide range of samples and that requires mostly nondestructive measurements.     

Identification of a highly conserved H1 subtype-specific epitope with diagnostic potential in the hemagglutinin protein of influenza A virus

Subtype specificity of influenza A virus (IAV) is determined by its two surface glycoproteins, hemagglutinin (HA) and neuraminidase (NA). For HA, 16 distinct subtypes (H1–H16) exist, while nine exist for NA. The epidemic strains of H1N1 IAV change frequently and cause annual seasonal epidemics as well as occasional pandemics, such as the notorious 1918 influenza pandemic. The recent introduction of pandemic A/H1N1 IAV (H1N1pdm virus) into humans re-emphasizes the public health concern about H1N1 IAV. Several studies have identified conserved epitopes within specific HA subtypes that can be used for diagnostics. However, immune specific epitopes in H1N1 IAV have not been completely assessed. In this study, linear epitopes on the H1N1pdm viral HA protein were identified by peptide scanning using libraries of overlapping peptides against convalescent sera from H1N1pdm patients. One epitope, P5 (aa 58–72) was found to be immunodominant in patients and to evoke high titer antibodies in mice. Multiple sequence alignments and in silico coverage analysis showed that this epitope is highly conserved in influenza H1 HA [with a coverage of 91.6% (9,860/10,767)] and almost completely absent in other subtypes [with a coverage of 3.3% (792/23,895)]. This previously unidentified linear epitope is located outside the five well-recognized antigenic sites in HA. A peptide ELISA method based on this epitope was developed and showed high correlation (χ² = 51.81, P<0.01, Pearson correlation coefficient R = 0.741) with a hemagglutination inhibition test. The highly conserved H1 subtype-specific immunodominant epitope may form the basis for developing novel assays for sero-diagnosis and active surveillance against H1N1 IAVs.     

A mechanics model of microtubule buckling in living cells

As the most rigid cytoskeletal filaments, microtubules bear compressive forces in living cells, balancing the tensile forces within the cytoskeleton to maintain the cell shape. It is often observed that, in living cells, microtubules under compression severely buckle into short wavelengths. By contrast, when compressed, isolated microtubules in vitro buckle into single long-wavelength arcs. The critical buckling force of the microtubules in vitro is two orders of magnitude lower than that of the microtubules in living cells. To explain this discrepancy, we describe a mechanics model of microtubule buckling in living cells. The model investigates the effect of the surrounding filament network and the cytosol on the microtubule buckling. The results show that, while the buckling wavelength is set by the interplay between the microtubules and the elastic surrounding filament network, the buckling growth rate is set by the viscous cytosol. By considering the nonlinear deformation of the buckled microtubule, the buckling amplitude can be determined at the kinetically constrained equilibrium. The model quantitatively correlates the microtubule bending rigidity, the surrounding filament network elasticity, and the cytosol viscosity with the buckling wavelength, the buckling growth rate, and the buckling amplitude of the microtubules. Such results shed light on designing a unified experimental protocol to measure various critical mechanical properties of subcellular structures in living cells.     

Architecture of the leaf of the greater reed mace, Typha latifolia L

ROWLATT, U. & MORSHEAD, H., 1992. Architecture of the leaf of the greater reed mace, Typha latifolia L. The construction of the leaf of T. latifolia is that of a lightweight cantilever beam of sandwich type mounted vertically. A continuous leaf-handed twist starts at the base of the leaf, proceeds gradually throughout its length and becomes most pronounced toward the tip. It is argued that this construction prevents buckling under natural conditions and injury in storms.     

THE FOOD AND FEEDING HABITS OF SHELDUCK TADORNA TADORNA

The food and feeding habits of Shelduck Tadorna tadorna are described, based on the analyses of the viscera of 30 birds collected under special licence, and of 18 birds found dead or dying during the cold weather of 1963, on faecal material from eight incubating birds, on field observations and on the literature. The birds came from a number of different localities and from each month of the year, apart from July.
The mollusc Hydrobia ulvae (Pennant) was found in all 46 birds which contained food, and it is quite obvious, and this is confirmed by the literature and by faecal analyses, that this is the most important food item during much of the year and in many different localities. Other species eaten included the bivalve Macoma balthica , the amphipod Corophium volutator , the ragworm Nereis sp., the alga Enteromorpha , and occasionally the seeds of various plants.
The importance of H. ulvae is examined in the light of its distribution and numbers, which may be a strong controlling factor in concentrating Shelduck in certain areas at certain times of the year.
The feeding behaviour of Shelduck, and a number of other birds, is apparently closely related to the cyclic behaviour pattern of the main food species, H. ulvae .
It seems that Shelduck have a rather fixed type of feeding behaviour which exploits only one feeding niche and therein mainly one food item. Any event (prolonged gales or very cold weather) which prevents the bird from using that niche can be the cause of heavy mortality.     

Mechanical instability of normal and aneurysmal arteries

Tortuous arteries associated with aneurysms have been observed in aged patients with atherosclerosis and hypertension. However, the underlying mechanism is poorly understood. The objective of this study was to determine the effect of aneurysms on arterial buckling instability and the effect of buckling on aneurysm wall stress. We investigated the mechanical buckling and post-buckling behavior of normal and aneurysmal carotid arteries and aorta’s using computational simulations and experimental measurements to elucidate the interrelationship between artery buckling and aneurysms. Buckling tests were done in porcine carotid arteries with small aneurysms created using elastase treatment. Parametric studies were done for model aneurysms with orthotropic nonlinear elastic walls using finite element simulations. Our results demonstrated that arteries buckled at a critical buckling pressure and the post-buckling deflection increased nonlinearly with increasing pressure. The presence of an aneurysm can reduce the critical buckling pressure of arteries, although the effect depends on the aneurysm’s dimensions. Buckled aneurysms demonstrated a higher peak wall stress compared to unbuckled aneurysms under the same lumen pressure. We conclude that aneurysmal arteries are vulnerable to mechanical buckling and mechanical buckling could lead to high stresses in the aneurysm wall. Buckling could be a possible mechanism for the development of tortuous aneurysmal arteries such as in the Loeys–Dietz syndrome.     

The allometry of saguaro height

The allometry of plant height H with respect to mean stem diameter D was determined based on 118 saguaro plants. The slope obtained for the reduced major axis regression analysis of the data was 2.36 ± 0.085, indicating that taller plants are disproportionately more slender than their shorter, presumably younger counterparts. The consequences of this positive, extremely anisometric relation on the elastic stability of stems were estimated by computing the critical buckling height H_crit for each of the 118 stems on the basis of the mean density-specific stiffness (i.e., the quotient of Young's elastic modulus E and bulk tissue density ρ) determined for a single section from a mature saguaro stem. E/ρ was nearly equivalent to that of tissue samples of sclerenchyma isolated from other plant species. Since the slope of H_crit vs. D equals ≈ 0.67 when E/ρ ≈ a constant, the safety-factor for saguaro stems (i.e., H_crit/H) appeared to be size-dependent such that it decreased with increasing plant height (i.e., H_crit/H ≈ D^-1.65). However, the mean safety-factor computed for the 118 saguaro specimens was 9.64, indicating that, on the average, plant height was well below H_crit. Additionally, circumstantial evidence suggests that saguaro stems become more stiff as they increase in size (and age) and that the rate of stem growth decelerates over time. The former would obtain a near size-independent safety-factor against elastic buckling while the latter protracts the time required to reach the critical buckling height. Comparisons among the allometries of H and H_crit for saguaro, other cacti, nonwoody, and highly branched tree species indicated that saguaro size overlaps with the lower size-range of the largest known dicot and gymnosperm tree specimens likely as a consequence of the high E/ρ of mature saguaro stems.     

In vitro culture increases mechanical stability of human tissue engineered cartilage constructs by prevention of microscale scaffold buckling

Many studies have measured the global compressive properties of tissue engineered (TE) cartilage grown on porous scaffolds. Such scaffolds are known to exhibit strain softening due to local buckling under loading. As matrix is deposited onto these scaffolds, the global compressive properties increase. However the relationship between the amount and distribution of matrix in the scaffold and local buckling is unknown. To address this knowledge gap, we studied how local strain and construct buckling in human TE constructs changes over culture times and GAG content. Confocal elastography techniques and digital image correlation (DIC) were used to measure and record buckling modes and local strains. Receiver operating characteristic (ROC) curves were used to quantify construct buckling. The results from the ROC analysis were placed into Kaplan-Meier survival function curves to establish the probability that any point in a construct buckled. These analysis techniques revealed the presence of buckling at early time points, but bending at later time points. An inverse correlation was observed between the probability of buckling and the total GAG content of each construct. This data suggests that increased GAG content prevents the onset of construct buckling and improves the microscale compressive tissue properties. This increase in GAG deposition leads to enhanced global compressive properties by prevention of microscale buckling.     

Artery buckling analysis using a four-fiber wall model

Artery bent buckling has been suggested as a possible mechanism that leads to artery tortuosity, which is associated with aging, hypertension, atherosclerosis, and other pathological conditions. It is necessary to understand the relationship between microscopic wall structural changes and macroscopic artery buckling behavior. To this end, the objectives of this study were to develop arterial buckling equations using a microstructure-based 4-fiber reinforced wall model, and to simulate the effects of vessel wall microstructural changes on artery buckling. Our results showed that the critical pressure increased nonlinearly with the axial stretch ratio, and the 4-fiber model predicted higher critical buckling pressures than what the Fung model predicted. The buckling equation using the 4-fiber model captured the experimentally observed reduction of critical pressure induced by elastin degradation and collagen fiber orientation changes in the arterial wall. These results improve our understanding of arterial stability and its relationship to microscopic wall remodeling, and the model provides a useful tool for further studies.     

Comparative studies on the feeding behaviour of high Antarctic amphipods (Crustacea) in laboratory

Summary Feeding behaviour of Epimeria robusta K.H. Barnard, 1930 (Paramphithoidae), Gnathiphimedia mandibularis K.H. Barnard, 1930 (Acanthonotozomatidae) and Paraceradocus gibber Andres, 1984 (Gammaridae) was observed in aquaria. The observations and the analysis of gut contents of preserved specimens demonstrate that these species have different feeding behaviour and food preferences. Additional information is given from an examination of the functional morphology of the mouth-parts.     

Role of host feeding niches and host refuges in habitat-related behaviour of Hyssopus pallidus (Hymenoptera: Eulophidae), a larval parasitoid of the codling moth

Parasitoid fitness depends largely on the capability to locate a host in an ecosystem. A parasitoid of a polyphagous host might not be able to find or to access the host in all its feeding niches. This study evaluated the niche selection of Hyssopus pallidus (Askew), a larval parasitoid of Cydia pomonella (Linnaeus), at the plant level with the goal of assessing its potential for biological control on different fruit crops throughout the plant cycle. Parasitoid behaviour during host location and reproduction rate were investigated on host caterpillars actively feeding on apple, pear, apricot or plum, and on caterpillars diapausing under the bark. Under laboratory conditions, the host searching behaviour of H. pallidus varied depending on the fruit species offered and the infestation of the fruits. Parasitoid females searched longer on apples than on other fruit species, and they searched longer on infested than on uninfested apples. Female wasps were able to locate and parasitize host caterpillars under the tree bark, and their behaviour did not vary with host accessibility. The numbers of caterpillars attacked by H. pallidus depended on the fruit species. The highest numbers of caterpillars were parasitized in apples and apricots. Their accessibility (i.e. position) within the fruit or on the branch did not influence parasitism success. Although hosts were parasitized throughout the season, the best results were achieved with early and late releases. Therefore, the host niche selection behaviour of H. pallidus most likely co-evolved with the host C. pomonella on apples, which renders H. pallidus a valuable biocontrol agent for successful release at different times of the season into apple orchards.