Reinforcement of carboxyl groups in the surface of Corynebacterium glutamicum biomass for effective removal of basic dyes

The biomass of Corynebacterium glutamicum was treated with poly(amic acid) to improve the biosorption of Basic Blue 3 (BB3) from aqueous solution. The grafting of poly(amic acid) onto the biomass surface increased the density of the carboxyl groups. The UV-spectrum revealed that strong acidic (pH  2) and basic conditions (pH  11) resulted in the precipitation of BB3. Therefore, pH edge experiments were conducted only within the range 3–10; these results indicated that electrostatic attraction between carboxyl groups of C. glutamicum and BB3 dye cations was favored under alkaline conditions. From the Langmuir model, poly(amic acid)-modified biomass gave a maximum uptake of 173.6 mg/g at pH 9, compared to 52.8 mg/g by the raw biomass. The biosorption kinetics was found to be fast; with equilibrium attained within 10 min. The increase in the ionic strength strongly affected the uptake of BB3 for both forms of C. glutamicum.     

金霉素生物合成基因簇中调控基因ctcB的功能

【目的】研究金霉素产生菌中SARP家族转录调控基因ctc B的作用。【方法】利用大肠杆菌、链霉菌的属间接合转移和同源重组双交换的方法,构建ctc B基因缺失突变株。通过c DNA在相邻同转录方向的基因间隔进行PCR验证,确定金霉素生物合成基因簇中的转录单元。利用荧光定量RT-PCR方法进行突变株金霉素生物合成基因簇的转录水平检测。随后,生物信息学预测分析了金霉素生物合成基因簇内Ctc B与DNA的结合位点。【结果】获得了ctc B基因缺失的双交换突变株。发酵结果显示,该突变株失去产生金霉素与四环素的能力。金霉素生物合成基因簇内有6个共转录单元,其中4个共转录单元在ctc B基因缺失突变株中转录水平明显下降。软件分析预测到一致性较高的Ctc B结合重复序列。【结论】ctc B正调控金霉素生物合成结构基因ctc G-D、ctc H-K、ctc N-P、ctc W-T 4个转录单元和ctc Q,为进一步研究ctc B调控机制奠定了基础。     

流产布鲁氏菌转录调控因子GntR在小鼠模型上诱导的辅助性T细胞免疫应答

【目的】通过对布鲁氏菌gntR基因进行原核表达,分析其诱导机体产生的Th1和Th2型免疫反应。【方法】以布鲁氏菌S2308基因组为模板,根据GenBank上公布的S2308 gntR基因序列设计引物,利用分子克隆技术,将gntR基因片段克隆至原核表达载体pET-30a,转化至大肠杆菌BL21感受态细胞中,诱导GntR蛋白表达;利用SDS-PAGE对GntR重组蛋白(rGntR)进行分析;利用AKTAxpress智能多维纯化系统对rGntR进行纯化;利用Western blotting分析其免疫反应性;用rGntR刺激小鼠巨噬细胞RAW 264.7和小鼠脾细胞,利用ELISA试剂盒检测细胞因子IFN-γ、IL-2、IL-4和IL-5,以及IgG抗体的水平。将rGntR免疫小鼠,检测小鼠血清中IFN-γ和IL-4的水平。【结果】gntR基因大小为735 bp,编码245个氨基酸,大约在35 kDa处出现蛋白条带,纯化后为单一条带。WB显示,rGntR具有较好的免疫反应性。rGntR可诱导宿主细胞和小鼠产生较高水平的IFN-γ、IL-4和IgG。【结论】rGntR可在体内或体外诱导辅助性T细...     

Probing the Drosophila retinal determination gene network in Tribolium (II): The Pax6 genes eyeless and twin of eyeless

The Pax6 genes eyeless (ey) and twin of eyeless (toy) are upstream regulators in the retinal determination gene network (RDGN), which instructs the formation of the adult eye primordium in Drosophila. Most animals possess a singleton Pax6 ortholog, but the dependence of eye development on Pax6 is widely conserved. A rare exception is given by the larval eyes of Drosophila, which develop independently of ey and toy. To obtain insight into the origin of differential larval and adult eye regulation, we studied the function of toy and ey in the red flour beetle Tribolium castaneum. We find that single and combinatorial knockdown of toy and ey affect larval eye development strongly but adult eye development only mildly in this primitive hemimetabolous species. Compound eye-loss, however, was provoked when ey and toy were RNAi-silenced in combination with the early retinal gene dachshund (dac). We propose that these data reflect a role of Pax6 during regional specification in the developing head and that the subsequent maintenance and growth of the adult eye primordium is regulated partly by redundant and partly by specific functions of toy, ey and dac in Tribolium. The results from embryonic knockdown and comparative protein sequence analysis lead us further to conclude that Tribolium represents an ancestral state of redundant control by ey and toy.     

空肠弯曲杆菌生物膜形成和调控机理研究进展北大核心CSCD

空肠弯曲杆菌(Campylobacter jejuni)分泌胞外多糖和各种胞外蛋白和核酸等相互交联在一起构成生物膜,可增强其在不利环境下的生存率,尤其是对各种洗涤剂、抗生素和消毒剂的耐受力。本文从介质表面性质、温度、气体环境、以及基因的调控等多方面阐述了空肠弯曲杆菌生物膜结构及形成调控机制,同时对各种去除生物膜的实际应用做了分析和展望,为探寻生物膜的控制方法提供参考。     

NADPH缺陷型Corynebacterium glutamicum重组菌株的构建及其性能分析

[目的]改造谷氨酸棒杆菌(Corynebacterium glutamicum)中NADPH合成途径,阻断胞内NADPH的合成,获得1株NADPH营养缺陷型菌株。[方法]通过失活L-赖氨酸高产菌C. glutamicum Lys-χ中葡萄糖-6-磷酸脱氢酶(Zwf)和苹果酸酶(MalE)并将NADP~+依赖型异柠檬酸脱氢酶(NADP~+-Icdcg)替换成变形链球菌(Streptococcus mutans)中的NAD~+-Icdsm,阻断胞内NADPH的合成。随后结合辅因子工程,引入大肠杆菌(Escherichia coli)中膜结合吡啶核苷酸转氢酶(PntAB)并通过不同强度启动子控制PntAB的表达水平。最后,分析不同重组菌中胞内氧化还原水平和L-赖氨酸生产强度的变化。[结果]重组菌C.glutamicum Lys-χΔZMI_(Cg)::I_(Sm)(即Lys-x1)胞内检测不到NADPH,为1株NADPH营养缺陷型菌株。该重组菌只在以葡萄糖酸为碳源的基础培养基中生长和积累L-赖氨酸,而以葡萄糖、丙酮酸、α-酮戊二酸和草酰乙酸为碳源时无法生长。此外,表达E.coli中的PntAB可回补重组菌Lys-χ1胞内NADPH的水平,但由于不同强度启动子控制PntAB表达水平不同,重组菌胞内NADPH水平也不同,并影响L-赖氨酸的生产强度。[结论]重组菌Lys-χ1可作为有效的底盘细胞,用于考察不同的NADPH再生策略,获得不同胞内NADPH水平的重组菌株,为进一步阐明NADPH调控微生物细胞生理代谢功能的机制提供研究基础。     

橄榄CaICE1基因的克隆和表达分析

为了解橄榄(Canarium album)抗寒相关转录因子ICE1的调控功能,采用RT-PCR技术克隆了‘福榄1号’的ICE1,命名为CaICE1,并进行生物信息学、qRT-PCR表达模式和相关miRNA预测分析。结果表明,CaICE1 cDNA序列的开放阅读框长度为1 650 bp,可编码549个氨基酸(GenBank登录号MG459422)。Ca ICE1为不稳定亲水性蛋白质,含有跨膜结构、磷酸化位点以及HLH保守结构域,定位于细胞核,与枳的ICE1亲缘关系较近。CaICE1密码子偏好性较弱,AGA、AGG、TGG和CCA可能为其最优密码子群。CaICE1主要在橄榄花、种子和叶中大量表达,-3℃低温胁迫下CaICE1表达水平比常温显著上升。psRNAtarget预测结果表明,CaICE1可能是miR825、miR477、miR5658、miR1436和miR394等多个逆境响应miRNA的靶基因。因此,CaICE1可能在橄榄低温胁迫过程中发挥重要调控作用,且可能受miRNA的调控。     

口蹄疫病毒结构蛋白VP1在谷氨酸棒状杆菌中的表达及优化

【背景】口蹄疫(foot-and-mouth disease, FMD)是由口蹄疫病毒(foot-and-mouth disease virus, FMDV)引起的感染牛、羊和猪等偶蹄动物的主要疫病之一。口蹄疫病毒的结构蛋白VP1包含多个能够引起机体免疫反应的主要位点,因此VP1是研究亚单位疫苗的方向靶标。谷氨酸棒状杆菌 (Corynebacterium glutamicum)作为安全生产菌株,是医药用蛋白生产的优势细胞工厂。【目的】利用C. glutamicum作为受体菌株表达外源蛋白的优势实现VP1的外源表达。【方法】根据VP1结构蛋白的基因序列、相应功能和C. glutamicum的密码子偏好性设计并合成VP1基因,与pXMJ19载体连接构成重组质粒pXMJ19-VP1。C. glutamicum CGMCC 1.15647菌株用于表达VP1-6×his蛋白,并对蛋白表达元件启动子、5′非翻译端(5′UTR)、目的蛋白自身N端等进行优化,同时对培养条件等进一步优化,采用SDS-PAGE和Western blotting技术检测VP1蛋白的表达情况。最后应用间接酶联免疫吸附试验(enzyme-linked immunosorbent assay, ELISA)测定本研究中生产的VP1的免疫活性。【结果】SDS-PAGE和Western blotting分析结果表明VP1蛋白能在C. glutamicum CGMCC 1.15647菌株成功表达,将P_tac启动子替换为合成型启动子P_H36能提高蛋白产量。在此基础上,通过插入不同的5′UTR序列和VP1蛋白N端氨基酸的改变能进一步提高蛋白产量并可利用CspB信号肽实现分泌表达。发酵试验表明,VP1摇瓶发酵培养最优条件为30 ℃、24 h。ELISA试验表明,本研究中的VP1可与阳性血清特异性结合。【结论】本研究在谷氨酸棒状杆菌中成功表达FMDV的VP1蛋白,并通过优化蛋白表达元件的方法进一步提高了产量,为开发新型FMD免疫诊断试剂和安全高效的亚单位疫苗奠定了良好的基础。     

LytSR和PdtaSR双组分系统对须糖多孢菌丁烯基多杀菌素生物合成的影响

[目的]须糖多孢菌(Saccharopolyspora pogona)基因组中存在一些双组分系统(two-component system,TCS),包括一个LytR调控因子和一个PdtaR转录抗终止调节因子,我们旨在通过基因工程技术改造分析这两个双组分系统蛋白在须糖多孢菌中的作用.[方法]本研究利用融合PCR和属间接...     

Molecular phylogeny of the Acre clade (Crassulaceae): Dealing with the lack of definitions for Echeveria and Sedum

The phylogenetic relationships within many clades of the Crassulaceae are still uncertain, therefore in this study attention was focused on the “Acre clade”, a group comprised of approximately 526 species in eight genera that include many Asian and Mediterranean species of Sedum and the majority of the American genera (Echeveria, Graptopetalum, Lenophyllum, Pachyphytum, Villadia, and Thompsonella). Parsimony and Bayesian analyses were conducted with 133 species based on nuclear (ETS, ITS) and chloroplast DNA regions (rpS16, matK). Our analyses retrieved four major clades within the Acre clade. Two of these were in a grade and corresponded to Asian species of Sedum, the rest corresponded to a European–Macaronesian group and to an American group. The American group included all taxa that were formerly placed in the Echeverioideae and the majority of the American Sedoideae. Our analyses support the monophyly of three genera – Lenophyllum, Thompsonella, and Pachyphytum; however, the relationships among Echeveria, Sedum and the various segregates of Sedum are largely unresolved. Our analyses represents the first broad phylogenetic framework for Acre clade, but further studies are necessary on the groups poorly represented here, such as the European and Asian species of Sedum and the Central and South American species of Echeveria.     

The control of Galba truncatula (Gastropoda: Lymnaeidae) by the terrestrial snail Zonitoides nitidus on acid soils

Field investigations on the control of Galba truncatula by Zonitoides nitidus were carried out over the past 30 years in the different types of lymnaeid habitats located in central France. When a layer of mowed vegetation was used to cover G. truncatula habitats at the end of June, the introduction of adult Z. nitidus (20/m²) eliminated lymnaeid populations after 2 years of control in habitats located in swampy meadows, around the heads of intermittent springs, in areas trampled by cattle, and along river or pond banks. In the case of wild watercress beds, 3 years were necessary. The best results (elimination of G. truncatula after a single year of control) were obtained using an association of snails (Z. nitidus + Oxychilus draparnaudi), or a mixed control (a first application of 0.1 mg/l CuCl₂, followed 3 months later by the introduction of Z. nitidus). Recolonization of treated habitats by G. truncatula coming from downstream populations was noted 3 years following the last application of biological control. Apart from the regular introduction of Z. nitidus in several watercress beds, the use of this snail to control G. truncatula has not become generalized in cattle- and sheep-breeding farms. The reasons for this situation are probably the complexity of applying this control in the field by nonspecialists and the difficulty of selecting the period of snail control at the end of June due to frequent local rainfall at this time.