No genetic diversity at molecular markers and strong phenotypic plasticity in populations of Ranunculus nodiflorus, an endangered plant species in France

BACKGROUND AND AIMS: Although conservation biology has long focused on population dynamics and genetics, phenotypic plasticity is likely to play a significant role in population viability. Here, an investigation is made into the relative contribution of genetic diversity and phenotypic plasticity to the phenotypic variation in natural populations of Ranunculus nodiflorus, a rare annual plant inhabiting temporary puddles in the Fontainebleau forest (Paris region, France) and exhibiting metapopulation dynamics. METHODS: The genetic diversity and phenotypic plasticity of quantitative traits (morphological and fitness components) were measured in five populations, using a combination of field measurements, common garden experiments and genotyping at microsatellite loci. KEY RESULTS: It is shown that populations exhibit almost undetectable genetic diversity at molecular markers, and that the variation in quantitative traits observed among populations is due to a high level of phenotypic plasticity. Despite the lack of genetic diversity, the natural population of R. nodiflorus exhibits large population sizes and does not appear threatened by extinction; this may be attributable to large phenotypic plasticity, enabling the production of numerous seeds under a wide range of environmental conditions. CONCLUSIONS: Efficient conservation of the populations can only be based on habitat management, to favour the maintenance of microenvironmental variation and the resulting strong phenotypic plasticity. In contrast, classical actions aiming to improve genetic diversity are useless in the present case.     

Effects of habitat fragmentation on the fitness of two common wetland species,Carex davalliana and Succisa pratensis

Small habitat size and spatial isolation may cause plant populations to suffer from genetic drift and inbreeding, leading to a reduced fitness of individual plants. We examined the germination, establishment, growth, and reproductive capacity of two characteristic species of mown fen meadows, Carex davalliana, and Succisa pratensis, common in Switzerland. Plants were grown from seeds, which were collected in 18 habitat islands, differing in size and in degree of isolation. We used both common garden and reciprocal transplant experiments to assess effects of habitat fragmentation. In the common garden, plants of Carex originating from small habitat islands yielded 35% less biomass, 30% fewer tillers, and 45% fewer flowering tillers than plants from larger ones. In contrast, plants of Succisa originating from small habitat islands yielded 19% more biomass, 14% more flower heads and 35% more flowers per flower head than plants from larger ones. Moreover, plants of Succisa from small isolated habitats yielded 32% more rosettes than did plants from small connected islands. Reciprocally transplanted plants of Succisa originating from small habitat islands produced 7% more rosettes than plants from larger ones. There was no effect of small habitat size and isolation on germination and establishment of both species in the field. Our results document genetic differences in performance attributable to habitat fragmentation in both species. We suggest that fitness loss in Carex is caused by inbreeding depression, whereas in Succisa the differences in fitness are more likely caused by genetic differentiation. Our study implies that habitat fragmentation affects common habitat-specific species, such as Carex and Succisa, as well as rare ones.     

Effects of vegetation, corridor width and regional land use on early successional birds on powerline corridors

Powerline rights-of-way (ROWs) often provide habitat for early successional bird species that have suffered long-term population declines in eastern North America. To determine how the abundance of shrubland birds varies with habitat within ROW corridors and with land use patterns surrounding corridors, we ran Poisson regression models on data from 93 plots on ROWs and compared regression coefficients. We also determined nest success rates on a 1-km stretch of ROW. Seven species of shrubland birds were common in powerline corridors. However, the nest success rates for prairie warbler (Dendroica discolor) and field sparrow (Spizella pusilla) were <21%, which is too low to compensate for estimated annual mortality. Some shrubland bird species were more abundant on narrower ROWs or at sites with lower vegetation or particular types of vegetation, indicating that vegetation management could be refined to favor species of high conservation priority. Also, several species were more abundant in ROWs traversing unfragmented forest than those near residential areas or farmland, indicating that corridors in heavily forested regions may provide better habitat for these species. In the area where we monitored nests, brood parasitism by brown-headed cowbirds (Molothrus ater) occurred more frequently close to a residential area. Although ROWs support dense populations of shrubland birds, those in more heavily developed landscapes may constitute sink habitat. ROWs in extensive forests may contribute more to sustaining populations of early successional birds, and thus may be the best targets for habitat management.     

Corridors for jaguar (Panthera onca) in Mexico: Conservation strategies

Several species of carnivores, as jaguar, live in low densities and require extent habitat areas for survive. One of their main threats is fragmentation and demographic isolation. Identifying the habitat corridors, we can help the conservation of these species. We identified the viable and potential corridors between jaguar management and conservation areas for Panthera onca in Mexico. We considerate an ensemble model of the potential distribution of P. onca in Mexico, from which were identified jaguar management and conservation areas (JCMA). According to these attributes, we identified the possible habitat corridors between the JCMA with Corridor Designer. Thirteen habitat corridors were between all JCMA. However only seven were viable corridors and six were potential corridors. Also, in two areas of potential corridors were identified Stepping Stones that can help the jaguar movement between large fragments. In the thirteen habitat corridors, the main threats for jaguars are habitat fragmentation, roads, highway and possible conflict human-wildlife (livestock predation). The results from this work can provide the bases to take actions on the protection of connecting zones and alleviate the mortality of wildlife in these areas.     

Predicting which species will benefit from corridors in fragmented landscapes from population growth models

Connecting isolated patches of habitat in fragmented landscapes with corridors is a popular conservation strategy. This strategy is also controversial in large part because of uncertainty about what characteristics of a species and its environment promote corridor use. In this article we address the question, For what types of species will populations benefit from corridors? We asked this question using a model of two logistically growing populations connected by migration in which both emigration and migration success were determined by the presence or absence of a corridor. We found that in the short run (e.g., during recovery from disaster), corridors are most effective for species with fast-growing populations that have low survivorship when dispersing through unsuitable (matrix) habitat. We also found that emigration rates and habitat-specific mortality rates are key determinants of the effects of corridors on population size. In the long term, corridors are most likely to benefit species with slow-growing populations that have low survivorship when dispersing through matrix habitat. Our results confirm the major conclusions from previous empirical studies of corridor benefits. However, most studies fail to consider the most appropriate questions to determine the potential benefits of habitat corridors. First, what is the time scale of the conservation goal? Corridors have positive effects on different suites of species in the short and long term. Second, is the major threat of local extinction due to sustained population decline or boom-bust cycles? Third, what is the migration rate through the matrix? Fourth, what fraction of migrants dispersing through the matrix successfully immigrate to another patch?     

Prediction of habitat suitability,connectivity, and corridors in the future to conserve roe deer (Capreolus capreolus) as a locally endangered species in northern Iran

Roe deer is a protected species in Iran as its population and distribution in the country have considerably declined. Roe deer are threatened by several factors such as habitat fragmentation and road mortality, so studying their distribution and movement through the increasing habitat destruction and fragmentation is necessary. This will become increasingly important because climate change will transform the species’ future habitat and connectivity patterns. We evaluated the roe deer’s potential distribution range in northern Iran and, for the first time, developed connectivity models and designed corridors for the present and future to make better conservation plans. We collected 91 points indicating the presence of roe deer in the study region. After developing ensemble models using six species distribution algorithms, we defined high-ranked habitat cores using the concept of landscape suitability prioritization. From these, we designed connectivity and corridors in two time-frames with the help of least-cost paths and circuit theories to predict the potential movement throughout the study area. We estimated that the overall core habitats for roe deer in the present and future periods are, respectively, around 1200 km² and 2600 km², corresponding to 2 and 4 percent of the whole area. This suggests that the habitat core will expand in the future as a result of climate change. Similarly, the connectivity among the cores will strengthen. We also conclude that the temperature-driven and anthropogenic variables significantly affect the distribution of roe deer in northern Iran. It is necessary that conservationists and managers consider the designed corridors in the present study while planning conservation strategies.     

Identifying refugia and corridors under climate change conditions for the Sichuan snub‐nosed monkey (Rhinopithecus roxellana) in Hubei Province,China

Using a case study of an isolated management unit of Sichuan snub‐nosed monkey (Rhinopithecus roxellana), we assess the extent that climate change will impact the species’ habitat distribution in the current period and projected into the 2050s. We identify refugia that could maintain the population under climate change and determine dispersal paths for movement of the population to future suitable habitats. Hubei Province, China. We identified climate refugia and potential movements by integrating bioclimatic models with circuit theory and least‐cost model for the current period (1960–1990) and the 2050s (2041–2060). We coupled a maximum entropy algorithm to predict suitable habitat for the current and projected future periods. Suitable habitat areas that were identified during both time periods and that also satisfied home range and dispersal distance conditions were delineated as refugia. We mapped potential movements measured as current flow and linked current and future habitats using least‐cost corridors. Our results indicate up to 1,119 km² of currently suitable habitat within the study range. Based on our projections, a habitat loss of 67.2% due to climate change may occur by the 2050s, resulting in a reduced suitable habitat area of 406 km² and very little new habitat. The refugia areas amounted to 286 km² and were located in Shennongjia National Park and Badong Natural Reserve. Several connecting corridors between the current and future habitats, which are important for potential movements, were identified. Our assessment of the species predicted a trajectory of habitat loss following anticipated future climate change. We believe conservation efforts should focus on refugia and corridors when planning for future species management. This study will assist conservationists in determining high‐priority regions for effective maintenance of the endangered population under climate change and will encourage increased habitat connectivity.     

Nest-predation at the edge: an experimental study contrasting two types of edges in the dry Chaco, Paraguay

Forest fragmentation leads to the creation of isolated forest patches with subsequent impact on forest-interior flora and fauna. Forested corridors have been suggested to alleviate some of the impact by increasing the connectivity between remnant forest patches. However, both fragmentation and corridors increase the ratio of edge to core habitat. We studied nest predation of artificial nests at edges between I) contiguous forests and pastures and 2) forested corridors and pastures, in a forest-dominated landscape in the dry Chaco, Paraguay, The aim was lo determine if nest predation was higher near habitat edges compared to within forests and pastures, with special emphasis on edges at forested corridors. We found that predation rates were similar at edges and in interior habitats. Nest predation was higher for both ground and shrub nests in forested areas than in pastures, Predation rates were also higher for both ground and shrub nests at edges along forested corridors compared to edges neighbouring contiguous forests. Forested corridors connecting contiguous forests may thus act as an ecological sink for some species breeding here. Analysis of predator categories revealed that ground nests in pastures were relatively more depredated by mammals and less by birds, compared to both shrub nests in pastures and ground nests in forests.     

Propagule vs. niche limitation: untangling the mechanisms behind plant species' distributions

Distinguishing the roles of propagule limitation and niche requirements in controlling plant species distributions is important for understanding community structure, invasion, and restoration. We used species distribution models based on plant and environmental survey data to assess the strength of species' affinities for particular environmental conditions. We hypothesized that species with statistically detectable environmental requirements were primarily niche-limited, while species with weak habitat affinities were primarily propagule-limited. We tested this hypothesis via a seeding experiment in which we compared species' reproductive fitness in occupied and unoccupied sites. Species that appeared to be niche-limited based on distribution models had lower fitness when planted in unoccupied sites, while species that models suggested were propagule-limited had equivalent fitness when planted in occupied and unoccupied sites. Our results demonstrate that within a single community, both species limited primarily by niche availability or primarily by propagule availability can be identified using observational data.     

Structure and diversity of phyllostomid bat assemblages on riparian corridors in a human‐dominated tropical landscape

Tropical forests around the world have been lost, mainly because of agricultural activities. Linear elements like riparian vegetation in fragmented tropical landscapes help maintain the native flora and fauna. Information about the role of riparian corridors as a reservoir of bat species, however, is scanty. We assessed the value of riparian corridors on the conservation of phyllostomid bat assemblage in an agricultural landscape of southern Mexico. For 2 years (2011–2013), mist‐netting at ground level was carried out twice during the dry season (December to May) and twice during the wet season (June to November) in different habitats: (1) riparian corridors in mature forest, (2) riparian corridors in pasture, (3) continuous forest away from riparian vegetation, and (4) open pastures. Each habitat was replicated three times. To determine the influence of vegetation structure on bat assemblages, all trees (≥10 cm dbh) were sampled in all habitats. Overall, 1752 individuals belonging to 28 species of Phyllostomidae were captured with Sternodermatinae being the most rich and abundant subfamily. Riparian corridors in mature forest and pastures had the greatest species richness and shared 65% of all species. Open pastures had the lowest richness and abundance of bats with no Phyllostominae species recorded. Six of the 18 species recorded could be considered as habitat indicators. There was a positive relationship between bat species composition and tree basal area. Our findings suggest that contrary to our expectations, bats with generalist habits and naturally abundant could be useful detector taxa of habitat modification, rather than bats strongly associated with undisturbed forest. Also in human‐dominated landscapes, the maintenance of habitat elements such as large trees in riparian corridors can serve as reservoirs for bat species, especially for those that are strongly associated with undisturbed forest.     

Species richness and food web structure of soil decomposer community as affected by the size of habitat fragment and habitat corridors

While most ecologists agree that the effects of fragmentation on diversity of organisms are predominantly negative and that the scale of fragmentation defines their severity, the role of habitat corridors in mitigating those effects still remains controversial. This ambiguousness rests largely on various difficulties in experimentation, a problem partially solved in the present paper by the use of easily manipulated soil communities. In this 2.5‐year‐long field experiment, we investigated the responses of soil decomposer organisms (from microbes to mesofaunal predators) to habitat fragment size, in the presence or absence of habitat corridors connecting the fragments. The habitat fragments and corridors, composed of forest humus soil, were embedded in mineral soil representing an uninhabitable (or nonpreferred) matrix for the decomposer organisms. The results demonstrate that soil decomposer organisms do respond to changes in their habitat size: the species richness of microarthropods (mites and collembolans) increased as the size of the fragments increased. Especially collembolan species and predatory mites proved to be sensitive to the restricted habitat size, which is suggested to be a consequence of the large proportion of rare species and small and fluctuating population sizes in these groups. Contrary to our expectations, the presence of corridors had no positive effects on species richness or abundance of any of the studied faunas, possibly because of the low quality of the corridors. On the other hand, the biomass of soil fungi increased in the presence of corridors, which apparently provided a preferred pathway for vegetative dispersal of the fungi. Our results indicate that despite their characteristic underground environment, the response of soil decomposer organisms – in particular that of microarthropods – to habitat size is not unlike to that of the larger organisms in aboveground habitats.     

Connectivity of priority areas for the conservation of large carnivores in northern Mexico

The loss and fragmentation of habitat has negative effects on populations of large carnivores, but ecological corridors that allow dispersal of individuals among habitat remnants mitigate these effects. Our objectives were to identify 1) priority areas for the conservation of three species of large carnivores in northern Mexico, 2) the corridors that can maintain connectivity between them, and 3) pinch points signifying habitat loss that threatens connectivity. We generated species distribution models using MaxEnt and GLM to obtain a consensus model for each species. We applied an inverse function to the probability gradient of the consensus models to calculate the resistance and identify the corridors between priority areas. With Linkage Mapper software, we generated the corridors, calculated their centrality and that of the priority areas, and identified the areas where the corridors are narrower (i.e., pinch points). Finally, we identified the main anthropic fragmentation elements in the most important corridors. We identified 6 priority areas for jaguar, 20 for puma and 21 for black bear, with 5 corridors for jaguar, 22 for puma and 29 for black bear. The pinch points were produced by agricultural fields, human settlements, roads, or combinations of these factors. Depending on the element of fragmentation in each corridor, we propose specific strategies at the pinch points, e.g., applying restoration programs, including wildlife crossings to mitigate road killed cases, promoting payment programs for environmental services or compensation in cases of conflict, to increase the support of local inhabitants for conservation.     

Extinction debt in a common grassland species: immediate and delayed responses of plant and population fitness

Changes in landscape structure and environmental conditions due to habitat fragmentation can have significant effects on plant populations. Decreasing genetic diversity and changing population structure can reduce plant fitness and influence the long-term persistence of populations. Dry calcareous grasslands in Estonia have witnessed a large decline in area within the last 80 years, but due to extinction debt, the species richness in these grasslands has not yet responded to this decline. In these calcareous grasslands, we studied genetic diversity, phenotypic performance and population characteristics of a common habitat-specialist grass, Briza media. A decrease in genetic diversity was associated with a decrease in plant reproductive output. In addition, we found that some fitness components of B. media showed a delayed response to landscape changes. Specifically, plant height and germination success were related to historical rather than to current landscape parameters, indicating a time-lagged response of plant performance to habitat fragmentation. Dependence on historical landscape structure may thus result in a future decline in population fitness even if habitat loss and fragmentation no longer continue. The documented effect of current environmental conditions, however, shows that fitness-related traits are already slowly adapting to the changing conditions. Our results indicate that even common habitat-specialist species can be susceptible to landscape changes and be threatened by decreased population performance in the future.     

旅游开发对景观边缘植物溢出效应的影响

人类活动导致的景观改变能形成大量的生境缀块和边缘结构,对植物扩散产生重要影响。以植物个体运动生态学——种子扩散模式作为分类依据,对兴凯湖自然保护区游憩带与非游憩带、交通廊道与非交通廊道中动物扩散物种、风扩散物种、无助力扩散物种(包括重力扩散、弹射扩散等短距离扩散的物种)以及全部物种的边缘溢出效应分别进行对比分析。结果显示,游憩带动物扩散物种和全部物种的边缘溢出效应均明显弱于非游憩带;而风扩散物种在游憩带和非游憩带均有大量溢出;无助力扩散物种在这两个实验区的溢出效应均不明显。交通廊道中动物扩散物种的溢出效应显著弱于非交通廊道,但风扩散物种却明显强于非交通廊道;无助力扩散物种在两种廊道类型中同样只有少量溢出,且距离相对较短;总体溢出效应并未发现显著差异。这些结果表明,旅游开发对植物运动生态学产生了影响,最终导致了溢出效应的改变。     

大兴安岭南段马鹿生境适宜性分析与生态廊道构建

构建生态廊道在缓解生境破碎化对生物多样性的影响、维持濒危物种的遗传多样性、维护自然生态系统结构完整与功能稳定方面具有重要作用。以内蒙古大兴安岭南段分布的马鹿(Cervus elaphus)种群为研究对象,利用MaxEnt模型对其生境适宜性进行分析,并利用最小累积阻力模型构建潜在生态扩散廊道,探讨大兴安岭南段区域隔离马鹿种群的栖息地连通方案。结果显示,马鹿栖息地呈破碎化状态,种群有明显的隔离分布趋势,现有适宜栖息地具有海拔较低(800—1200 m)、坡度较缓(<15°)、靠近水源、植被类型多为靠近山林的灌丛或草地等特点。所构建12条生态廊道具有经过河流浅水节段、远离村落等特点,便于落实栖息地生态恢复管理措施。研究从区域尺度综合分析了大兴安岭南段马鹿栖息地现状及连通性,有助于优化适宜栖息地格局,促进马鹿扩散和栖息地连通,为该物种隔离种群及其栖息地保护规划提供现实指导和基础资料。     

Avian fitness consequences match habitat selection at the nest‐site and landscape scale in agriculturally fragmented landscapes

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Effects of habitat area, isolation, and landscape diversity on plant species richness of calcareous grasslands

Calcareous grasslands harbour a high biodiversity, but are highly fragmented and endangered in central Europe. We tested the relative importance of habitat area, habitat isolation, and landscape diversity for species richness of vascular plants. Plants were recorded on 31 calcareous grasslands in the vicinity of the city of Göttingen (Germany) and were divided into habitat specialist and generalist species. We expected that habitat specialists were more affected by area and isolation, and habitat generalists more by landscape diversity. In multiple regression analysis, the species richness of habitat specialists (n = 66 species) and habitat generalists (n = 242) increased with habitat area, while habitat isolation or landscape diversity did not have significant effects. Contrary to predictions, habitat specialists were not more affected by reduced habitat area than generalists. This may have been caused by delayed extinction of long-living plant specialists in small grasslands. Additionally, non-specialists may profit more from high habitat heterogeneity in large grasslands compared to habitat specialists. Although habitat isolation and landscape diversity revealed no significant effect on local plant diversity, only an average of 54% of habitat specialists of the total species pool were found within one study site. In conclusion, habitat area was important for plant species conservation, but regional variation between habitats contributed also an important 46% of total species richness.     

Consequences of habitat fragmentation for plant species: Do we know enough?

Habitat fragmentation is one of the most important causes for the decline of plant species. However, plants differing in phylogeny, habitat requirements and biology are likely to respond differently to habitat fragmentation. We ask whether case studies on the effects of habitat fragmentation conducted so far allow generalizations about its effects on the fitness and genetic diversity of populations of endangered plant species. We compared the characteristics of plant species endangered in Germany whose sensitivity to habitat fragmentation had been studied with those of the endangered species that had not been studied. We found strong discrepancies between the two groups with regard to their taxonomy and traits relevant to their sensitivity to habitat fragmentation. Monocots, graminoids, clonal, abiotically pollinated and self compatible species were underrepresented among the studied species, and most study species were from a few habitat types, in particular grasslands. We conclude that our current knowledge of the effects of habitat fragmentation on plant populations is not sufficient to provide widely applicable guidelines for species management. The selection of species studied so far has been biased toward species from certain habitats and species exhibiting traits that probably make them vulnerable to habitat fragmentation. Future studies should include community-wide approaches in different habitats, e.g. re-visitation studies in which the species pool is assessed at different time intervals, and population-biological studies of species from a wide range of habitats, and of different life forms and growth strategies. A more representative picture of the effects of habitat fragmentation would allow a better assessment of threats and more specific recommendations for optimally managing populations of endangered plants.     

Changes in avian species composition following surface mining and reclamation along a riparian forest corridor in southern Indiana

Data on the response of bird communities to surface mining and habitat modification are limited, with virtually no data examining the effects of mining on bird communities in and along riparian forest corridors. Bird community composition was examined using line transects from 1994 to 2000 at eight sites within and along a riparian forest corridor in southwestern Indiana that was impacted by an adjacent surface mining operation. Three habitats were sampled: closed canopy, riparian forest with no open water; fragmented canopy, riparian forest with flood plain oxbows; and reclaimed mined land with constructed ponds. Despite shifts in species composition, overall bird species richness, measured as the mean number of bird species recorded/transect route, did not differ among habitats and remained unchanged across years. More species were recorded solely on mined land than in either closed forest or forested oxbow habitats. Mined land provided stopover habitat for shorebirds and waterfowl not recorded in other habitats, and supported an assemblage of grassland-associated bird species weakly represented in the area prior to mining. A variety of wood warblers and other migrants were recorded in the forest corridor throughout the survey period, suggesting that, although surface mining reduced the width of the forest corridor, the corridor was still important habitat for movement of forest-dependent birds and non-resident bird species in migration. We suggest that surface mining and reclamation practices can be implemented near riparian forest and still provide for a diverse assemblage of bird species. These data indicate that even narrow (0.4 km wide) riparian corridors are potentially valuable in a landscape context as stopover habitats and routes of dispersal and movement of forest-dependent and migratory bird species.     

不同鸟类生境网络复合与优化——以苏锡常地区白鹭、鸳鸯、雉鸡为例

通过复合优化不同焦点物种的生境网络表征多数物种生境网络实现物种多样性保护,具有重要理论价值和实践意义。以苏锡常地区为研究区域,以白鹭、鸳鸯和雉鸡3种鸟类为焦点物种,通过采用生境斑块约束条件模型与最小成本路径法相结合的方法识别出生境网络;从满足集合覆盖问题视角出发,通过采用网络构成要素复合的方法进行网络复合,其中廊道与廊道的复合通过采用评价生态系统服务价值的方法实现;通过采用观测数据为生境斑块和迁移廊道增补依据的方法进行复合生境网络优化。结果表明:生境网络经过复合,廊道总面积、总长度及生态系统服务价值在分别减少了16%、68%和10%的情况下,保持了斑块间的连接度、兼顾到经济效益和生态效益最大化、覆盖了占总数86%以上的75处观测点;复合生境网络经过优化,覆盖了2010年及以后所有84处观测点,廊道总面积、总长度及生态系统服务价值分别增加了19%、21%和27%;说明生境网络复合优化定量分析方法和思路具有可行性,为网络复合研究提供了借鉴。