Estimation of autotrophic and heterotrophic components of soil respiration by trenching is sensitive to corrections for root decomposition and changes in soil water content

This study aims to assess the effects of corrections for disturbances such as an increased amount of dead roots and an increase in volumetric soil water content on the calculation of soil CO₂ efflux partitioning. Soil CO₂ efflux, soil temperature and superficial soil water content were monitored in two young beech sites (H1 and H2) during a trenching experiment. Trenching induced a significant input of dead root mass that participated in soil CO₂ efflux and reduced the soil dissolved organic carbon content, while it increased superficial soil water content within the trenched plot. Annual soil CO₂ efflux in control plots was 528 g C m⁻² year⁻¹ at H1 and 527 g C m⁻² year⁻¹ at H2. The annual soil CO₂ efflux in trenched plots was 353 g C m⁻² year⁻¹ at H1 and 425 g C m⁻² year⁻¹ at H2. By taking into account annual CO₂ efflux from decaying trenched roots, the autotrophic contribution to total soil CO₂ efflux reached 69% at H1 and 54% at H2. The partitioning calculation was highly sensitive to the initial root mass estimated within the trenched plots. Uncertainties in the remaining root mass, the fraction of root C that is incorporated into soil organic matter during root decomposition, and the root decomposition rate constant had a limited impact on the partitioning calculation. Corrections for differences in superficial soil water content had a significant impact on annual respired CO₂ despite a limited effect on partitioning.     

植物源和土壤有机质源土壤呼吸组分的拆分原理、方法与应用进展

区分土壤呼吸组分并揭示其与环境因素的相关关系,对于准确评估土壤碳过程及其环境影响机制至关重要。根据底物来源和作用机制的差异,土壤呼吸主要包括根系呼吸、根际微生物呼吸、凋落物分解、自然条件下和激发效应下土壤有机质（SOM）分解。现有土壤呼吸组分拆分方法可以分为基于植物源CO₂测定或土壤有机质源CO₂测定的差分拆分方法,以及基于土壤呼吸组分同位素信号差异的拆分方法。土壤呼吸组分拆分研究可以解决不同土壤呼吸组分对环境变化的响应机制、植物光合碳输入与地下土壤呼吸组分的交互作用、土壤呼吸组分变化对土壤碳库周转的影响机制等科学问题,但其理论假设、观测技术方法、潜在的误差来源等仍需要继续关注并系统研究。     

Effect of elevated atmospheric CO2 concentration on soil and root respiration in winter wheat by using a respiration partitioning chamber

Soil respiration in a cropland is the sum of heterotrophic (mainly microorganisms) and autotrophic (root) respiration. The contribution of both these types to soil respiration needs to be understood to evaluate the effects of environmental change on soil carbon cycling and sequestration. In this paper, the effects of free-air CO₂ enrichment (FACE) on hetero- and autotrophic respiration in a wheat field were differentiated and evaluated by a novel split-root growth and gas collection system. Elevated atmospheric pCO₂ of approximately 200 μmol mol⁻¹ above the ambient pCO₂ significantly increased soil respiration by 15.1 and 14.8% at high nitrogen (HN) and low nitrogen (LN) application rates, respectively. The effect of elevated atmospheric pCO₂ on root respiration was not consistent across the wheat growth stages. Elevated pCO₂ significantly increased and decreased root respiration at the booting-heading stage (middle stage) and the late-filling stage (late stage), respectively, in HN and LN treatments; however, no significant effect was found at the jointing stage (early stage). Thus, the effect of increased pCO₂ on cumulative root respiration for the entire wheat growing season was not significant. Cumulative root respiration accounted for approximately 25–30% of cumulative soil respiration in the entire wheat growing season. Consequently, cumulative microbial respiration (soil respiration minus root respiration) increased by 22.5 and 21.1% due to elevated pCO₂ in HN and LN, respectively. High nitrogen application significantly increased root respiration at the late stage under both elevated pCO₂ and ambient pCO₂; however, no significant effects were found on cumulative soil respiration, root respiration, and microbial respiration. These findings suggest that heterotrophic respiration, which is influenced by increased substrate supplies from the plant to the soil, is the key process to determine C emission from agro-ecosystems with regard to future scenarios of enriched pCO₂.     

Indirect partitioning of soil respiration in a series of evergreen forest ecosystems

A simple estimation of heterotrophic respiration can be obtained analytically as the y-intercept of the linear regression between soil-surface CO₂ efflux and root biomass. In the present study, a development of this indirect methodology is presented by taking into consideration both the temporal variation and the spatial heterogeneity of heterotrophic respiration. For this purpose, soil CO₂ efflux, soil carbon content and main stand characteristics were estimated in seven evergreen forest ecosystems along an elevation gradient ranging from 250 to 1740 m. For each site and for each sampling date the measured soil CO₂ efflux (R _S) was predicted with the model R _S = a × S _C + b × R _D ± ε, where S _C is soil carbon content per unit area to a depth of 30 cm and R _D is the root density of the 2–5 mm root class. Regressions with statistically significant a and b coefficients allowed the indirect separation of the two components of soil CO₂ efflux. Considering that the different sampling dates were characterized by different soil temperature, it was possible to investigate the temporal and thermal dependency of autotrophic and heterotrophic respiration. It was estimated that annual autotrophic respiration accounts for 16–58% of total soil CO₂ efflux in the seven different evergreen ecosystems. In addition, our observations show a decrease of annual autotrophic respiration at increasing availability of soil nitrogen. Section Editor: A. Hodge     

Effect of carbon dioxide concentration on microbial respiration in soil

In order to assess the validity of conventional methods for measuring CO₂ flux from soil, the relationship between soil microbial respiration and ambient CO₂ concentration was studied using an open-flow infra-red gas analyser (IRGA) method. Andosol from an upland field in central Japan was used as a soil sample. Soil microbial respiration activity was depressed with the increase of CO₂ concentration in ventilated air from 0 to 1000 ppmv. At 1000 ppmv, the respiration rate was less than half of that at 0 ppmv. Thus, it is likely that soil respiration rate is overestimated by the alkali absorption method, because CO₂ concentration in the absorption chamber is much lower than the normal level. Metabolic responses to CO₂ concentration were different among groups of soil microorganisms. The bacteria actinomycetes group cultivated on agar medium showed a more sensitive response to the CO₂ concentration than the filamentous fungi group.     

Forest soil respiration across three climatically distinct chronosequences in Oregon

To assess the relative influence of edaphoclimatic gradients and stand replacing disturbance on the soil respiration of Oregon forests, we measured annual soil respiration at 36 independent forest plots arranged as three replicates of four age classes in each of three climatically distinct forest types. Annual soil respiration for the year 2001 was computed by combining periodic chamber measurements with continuous soil temperature measurements, which were used along with site-specific temperature response curves to interpolate daily soil respiration between dates of direct measurement. Results indicate significant forest type, age, and type × age interaction effects on annual soil respiration. Average annual soil respiration was 1100–1600, 1500–2100, and 500–900 g C m⁻² yr⁻¹ for mesic spruce, montane Douglas-fir, and semi-arid pine forests respectively. Age related trends in annual soil respiration varied between forest types. The variation in annual soil respiration attributable to the climatic differences between forest types was 48%(CV). Once weighted by the age class distribution for each forest type, the variation in annual soil respiration attributable to stand replacing disturbance was 15%(CV). Sensitivity analysis suggests that the regional variation in annual soil respiration is most dependent on summer base rates (i.e. soil respiration normalized to a common temperature) and much less dependent on the site-specific temperature response curves (to which annual rates are relatively insensitive) and soil degree-days (which vary only 10% among plots).     

Separating root and soil microbial contributions to soil respiration: A review of methods and observations

Forest soil respiration is the sum of heterotrophic (microbes, soil fauna) and autotrophic (root) respiration. The contribution of each group needs to be understood to evaluate implications of environmental change on soil carbon cycling and sequestration. Three primary methods have been used to distinguish hetero- versus autotrophic soil respiration including: integration of components contributing to in situ forest soil CO₂ efflux (i.e., litter, roots, soil), comparison of soils with and without root exclusion, and application of stable or radioactive isotope methods. Each approach has advantages and disadvantages, but isotope based methods provide quantitative answers with the least amount of disturbance to the soil and roots. Published data from all methods indicate that root/rhizosphere respiration can account for as little as 10 percent to greater than 90 percent of total in situ soil respiration depending on vegetation type and season of the year. Studies which have integrated percent root contribution to total soil respiration throughout an entire year or growing season show mean values of 45.8 and 60.4 percent for forest and nonforest vegetation, respectively. Such average annual values must be extrapolated with caution, however, because the root contribution to total soil respiration is commonly higher during the growing season and lower during the dormant periods of the year.     

The use of soil respiration as an ecological indicator in arid ecosystems of the SE of Spain: Spatial variability and controlling factors

In the context of an ongoing monitoring study of the Cabo de Gata-Níjar Natural Park (SE of Spain), we explored the use of soil respiration as an indicator of ecosystem functioning reflecting changes in ecological processes in semiarid environments. With this purpose, we measured soil CO₂ efflux in six different and representative ecosystems of the Natural Park, with different land uses (forest and agricultural sites) and under different soil covers (under plant and bare soil) in two distinctive periods of the year: summer (dry period) and spring (growing season). We also measured the main soil properties and environmental variables. Soil CO₂ efflux ranged from 0.40 μmol m⁻² s⁻¹ in the dry period to 1.93 μmol m⁻² s⁻¹ in the growing season. Soil CO₂ efflux showed a large spatial variability, with different behaviour between the measured periods. Whereas in the dry period differences among ecosystems were larger (CVs 75-80%) than within them (CVs 40-55%), in the growing season the CVs were smaller (40-50%) and no differences were observed between or within ecosystem. The factors controlling soil CO₂ efflux also differed in the two measurement occasions. Whereas in the dry period soil CO₂ efflux was mainly the result of transport processes in the soil and therefore related to local factors (OC content, CN ratio, clay, rock outcrop, etc.) assigned to ecosystem conditions, in the growing season soil CO₂ efflux was dominated by soil CO₂ production and thus related only to organic carbon content and plant cover. In the growing season environmental variables explained ca. 10% of the variation in soil CO₂ efflux. In order to capture these different processes in different times of the year, i.e., diffusion versus production processes we calculated a new index, normalised seasonal difference in soil respiration (SDSR), which is proposed as a good indicator of the state and functioning of the ecosystem.     

Examination of the method for measuring soil respiration in cultivated land: Effect of carbon dioxide concentration on soil respiration

An acceleration of soil respiration with decreasing CO₂ concentration was suggested in the field measurements. The result supporrs that obtained in laboratory experiments in our previous study. The CO₂ concentrations in a chamber of the alkali absorption method (the AA-method) were about 150–250 parts/10⁶ lower than that in the atmosphere (about 350 parts/10⁶), while those observed in the open-flow IRGA method (the OF-method) were nearly equal to the soil surface CO₂ levels. The AA-method at such low CO₂ levels in the chamber appears to overestimate the soil respiration. Our results showed that the rates obtained by the AA-method were about twice as large as those by the OF-method in field and laboratory measurements. This finding has important consequences with respect to the validity of the existing data obtained by the AA-method and the estimation of changes in the terrestrial carbon flow with elevated CO₂     

Partitioning of soil respiration components and evaluating the mycorrhizal contribution to soil respiration in a semiarid grassland

土壤呼吸组分的区分对于理解地下碳循环过程非常重要。而菌根真菌在地下碳循环过程中扮演着重要的角色, 但是有关菌根呼吸在草原生态系统中的研究相对较少。该研究在内蒙古半干旱草原应用深浅环网孔法, 结合浅环、深环(排除根系)和一个带有40 μm孔径窗口的土壤环(排除根系但是有菌根菌丝体)将根和菌丝物理分离, 来区分不同的呼吸组分。结果表明: 异养呼吸对总呼吸的贡献比例为51%, 根呼吸的贡献比例为26%, 菌根呼吸的贡献比例为23%, 菌根呼吸的比例3年变化范围为21%-26%。与国内外研究相比, 此方法提供了一个相对稳定的菌根呼吸测量精度范围, 在草原生态系统中切实可行。对菌根呼吸的准确定量将有助于预测草原生态系统土壤碳释放过程对未来气候变化的响应。     

半干旱草原土壤呼吸组分区分与菌根呼吸的贡献

土壤呼吸组分的区分对于理解地下碳循环过程非常重要。而菌根真菌在地下碳循环过程中扮演着重要的角色, 但是有关菌根呼吸在草原生态系统中的研究相对较少。该研究在内蒙古半干旱草原应用深浅环网孔法, 结合浅环、深环(排除根系)和一个带有40 μm孔径窗口的土壤环(排除根系但是有菌根菌丝体)将根和菌丝物理分离, 来区分不同的呼吸组分。结果表明: 异养呼吸对总呼吸的贡献比例为51%, 根呼吸的贡献比例为26%, 菌根呼吸的贡献比例为23%, 菌根呼吸的比例3年变化范围为21%-26%。与国内外研究相比, 此方法提供了一个相对稳定的菌根呼吸测量精度范围, 在草原生态系统中切实可行。对菌根呼吸的准确定量将有助于预测草原生态系统土壤碳释放过程对未来气候变化的响应。     

Soil respiration of Alaskan tundra at elevated atmospheric carbon dioxide concentrations

Summary CO₂ efflux from tussock tundra in Alaska that had been exposed to elevated CO₂ for 2.5 growing seasons was measured to assess the effect of long- and short-term CO₂ enrichment on soil respiration. Long-term treatments were: 348, 514, and 683 μll⁻¹ CO₂ and 680 μll⁻¹ CO₂+4°C above ambient. Measurements were made at 5 CO₂ concentrations between 87 and 680 μll⁻¹ CO₂. Neither long- or short-term CO₂ enrichment significantly affected soil CO₂ efflux. Tundra developed at elevated temperature and 680 μll⁻¹ CO₂ had slightly higher, but not statistically different, mean respiration rates compared to untreated tundra and to tundra under CO₂ control alone.     

Estimating respiration of roots in soil: Interactions with soil CO2, soil temperature and soil water content

Little information is available on the variability of the dynamics of the actual and observed root respiration rate in relation to abiotic factors. In this study, we describe I) interactions between soil CO₂ concentration, temperature, soil water content and root respiration, and II) the effect of short-term fluctuations of these three environmental factors on the relation between actual and observed root respiration rates. We designed an automated, open, gas-exchange system that allows continuous measurements on 12 chambers with intact roots in soil. By using three distinct chamber designs with each a different path for the air flow, we were able to measure root respiration over a 50-fold range of soil CO₂ concentrations (400 to 25000 ppm) and to separate the effect of irrigation on observed vs. actual root respiration rate. All respiration measurements were made on one-year-old citrus seedlings in sterilized sandy soil with minimal organic material.Root respiration was strongly affected by diurnal fluctuations in temperature (Q₁₀ = 2), which agrees well with the literature. In contrast to earlier findings for Douglas-fir (Qi et al., 1994), root respiration rates of citrus were not affected by soil CO₂ concentrations (400 to 25000 ppm CO₂; pH around 6). Soil CO₂ was strongly affected by soil water content but not by respiration measurements, unless the air flow for root respiration measurements was directed through the soil. The latter method of measuring root respiration reduced soil CO₂ concentration to that of incoming air. Irrigation caused a temporary reduction in CO₂ diffusion, decreasing the observed respiration rates obtained by techniques that depended on diffusion. This apparent drop in respiration rate did not occur if the air flow was directed through the soil. Our dynamic data are used to indicate the optimal method of measuring root respiration in soil, in relation to the objectives and limitations of the experimental conditions.     

Precipitation pulse size effects on Sonoran Desert soil microbial crusts

Deserts are characterized by low productivity and substantial unvegetated space, which is often covered by soil microbial crust communities. Microbial crusts are important for nitrogen fixation, soil stabilization and water infiltration, but their role in ecosystem production is not well understood. This study addresses the following questions: what are the CO₂ exchange responses of crusts to pulses of water, does the contribution of crusts to ecosystem flux differ from the soil respiratory flux, and is this contribution pulse size dependent? Following water application to crusts and soils, CO₂ exchange was measured and respiration was partitioned through mixing model analysis of Keeling plots across treatments. Following small precipitation pulse sizes, crusts contributed 80% of soil-level CO₂ fluxes to the atmosphere. However, following a large pulse event, roots and soil microbes contributed nearly 100% of the soil-level flux. Rainfall events in southern Arizona are dominated by small pulse sizes, suggesting that crusts may frequently contribute to ecosystem production. Carbon cycle studies of arid land systems should consider crusts as important contributors because of their dynamic responses to different pulse sizes as compared to the remaining ecosystem components.     

On the assessment of root and soil respiration for soils of different textures: interactions with soil moisture contents and soil CO2 concentrations

Estimates of root and soil respiration are becoming increasingly important in agricultural and ecological research, but there is little understanding how soil texture and water content may affect these estimates. We examined the effects of soil texture on (i) estimated rates of root and soil respiration and (ii) soil CO₂ concentrations, during cycles of soil wetting and drying in the citrus rootstock, Volkamer lemon (Citrus volkameriana Tan. and Pasq.). Plants were grown in soil columns filled with three different soil mixtures varying in their sand, silt and clay content. Root and soil respiration rates, soil water content, plant water uptake and soil CO₂ concentrations were measured and dynamic relationships among these variables were developed for each soil texture treatment. We found that although the different soil textures differed in their plant-soil water relations characteristics, plant growth was only slightly affected. Root and soil respiration rates were similar under most soil moisture conditions for soils varying widely in percentages of sand, silt and clay. Only following irrigation did CO₂ efflux from the soil surface vary among soils. That is, efflux of CO₂ from the soil surface was much more restricted after watering (therefore rendering any respiration measurements inaccurate) in finer textured soils than in sandy soils because of reduced porosity in the finer textured soils. Accordingly, CO₂ reached and maintained the highest concentrations in finer textured soils (> 40 mmol CO₂ mol⁻¹). This study revealed that changes in soil moisture can affect interpretations of root and soil measurements based on CO₂ efflux, particularly in fine textured soils. The implications of the present findings for field soil CO₂ flux measurements are discussed. This revised version was published online in June 2006 with corrections to the Cover Date.     

Coupling of canopy gas exchange with root and rhizosphere respiration in a semi-arid forest

The strength of coupling between canopy gas exchange and root respiration was examined in ~15-yr-old ponderosa pine (Pinus ponderosa Doug. Ex Laws.) growing under seasonally drought stressed conditions. By regularly watering part of the root system to reduce tree water stress and measuring soil CO₂ efflux on the dry, distant side of the tree, we were able to determine the strength of the relationship between soil autotrophic (root and rhizosphere) respiration and changes in canopy carbon uptake and water loss by comparison with control trees (no watering). After ~40 days the soil CO₂ efflux rate, relative to pre-treatment conditions, was twice that of the controls. This difference, attributable to root and rhizosphere respiration, was strongly correlated with differences in transpiration rates between treatments (r² = 0.73, p<0.01). By the end of the period, transpiration of the irrigated treatment was twice that of controls. Periodic measurements of photosynthesis under non-light limited conditions paralleled the patterns of transpiration and were systematically higher in the irrigated treatment. We observed no evidence for a greater sensitivity of soil autotrophic respiration to temperature compared to the response of heterotrophic respiration to temperature; the Q₁₀ for total soil respiration was 1.6 (p>0.99) for both treatments. At the ecosystem scale, daily soil CO₂ efflux rate was linearly related to gross primary productivity (GPP) as measured by eddy-covariance technique (r² = 0.55, p<0.01), suggesting patterns of soil CO₂ release appear strongly correlated to recent carbon assimilation in this young pine stand. Collectively the observed relationships suggest some consideration should be given to the inclusion of canopy processes in future models of soil respiration.     

土壤微生物与根系呼吸作用影响因子分析

土壤呼吸作用作为陆地生态系统碳循环的重要组成部分,是当前碳循环研究中的热点问题.对于土壤呼吸作用主要组成部分土壤微生物呼吸作用和根系呼吸作用影响因子的研究,有助于准确地评估全球碳收支.本文从气候、土壤、植被及地表覆被物、大气CO₂浓度、人为干扰等方面综述了土壤微生物呼吸作用和根系呼吸作用的主导影响因子,指出这些影响因子不仅直接或间接地影响土壤微生物呼吸作用和根系呼吸作用,而且它们之间相互作用、相互影响,且各影响因子的地位和作用会随时空尺度变化发生相应改变.在此基础上,论文提出了未来土壤呼吸作用的研究重点.     

Evaluation of soil respiration and soil CO2 concentration in a lowland moist forest in Panama

Soil gas exchange was investigated in a lowland moist forest in Panama. Soil water table level and soil redox potentials indicate that the soils are not waterlogged. Substantial microspatial variation exists for soil respiration and soil CO₂ concentration. During the rainy season, soil CO₂ at 40 cm below the surface accumulates to 2.3%–4.6% and is correlated with rainfall during the previous two weeks. Temporal changes in soil CO₂ are rapid, large and share similar trends between sampling points. Possible effects of soil CO₂ changes on plant growth or phenology are discussed.     

Soil properties differently influence estimates of soil CO2 efflux from three chamber-based measurement systems

Soil CO₂ efflux is a major component of net ecosystem productivity (NEP) of forest systems. Combining data from multiple researchers for larger-scale modeling and assessment will only be valid if their methodologies provide directly comparable results. We conducted a series of laboratory and field tests to assess the presence and magnitude of soil CO₂ efflux measurement system × environment interactions. Laboratory comparisons were made with a dynamic, steady-state CO₂ flux generation apparatus, wherein gas diffusion drove flux without creating pressure differentials through three artificial soil media of varying air-filled porosity. Under these conditions, two closed systems (Li-6400-09 and SRC-1) exhibited errors that were dependent on physical properties of the artificial media. The open system (ACES) underestimated CO₂ flux. However, unlike the two other systems, the ACES results could be corrected with a single calibration equation that was unaffected by physical differences in artificial media. Both scale and rank changes occurred among the measurement systems across four sites. Our work clearly shows that soil CO₂ efflux measurement system × environment interactions do occur and can substantially impact estimates of soil CO₂ efflux. Until reliable calibration techniques are developed and applied, such interactions make direct comparison of published rates, and C budgets estimated using such rates, difficult.     

Contribution of root respiration to soil respiration in a C3/C4 mixed grassland

The spatial and temporal variations of soil respiration were studied from May 2004 to June 2005 in a C₃/C₄ mixed grassland of Japan. The linear regression relationship between soil respiration and root biomass was used to determine the contribution of root respiration to soil respiration. The highest soil respiration rate of 11-54 Μmol m^-2 s^-1 was found in August 2004 and the lowest soil respiration rate of 4.99 Μmol m^-2 s^-1 was found in April 2005. Within-site variation was smaller than seasonal change in soil respiration. Root biomass varied from 0.71 kg m^-2 in August 2004 to 102 in May 2005. Within-site variation in root biomass was larger than seasonal variation. Root respiration rate was highest in August 2004 (5.7 Μmol m^-2 s^-1) and lowest in October 2004 (1.7 Μmol m^-2 s^-1). Microbial respiration rate was highest in August 2004 (5.8 Μmol m^-2 s^-1) and lowest in April 2005 (2.59 Μmol m^-2 s^-1). We estimated that the contribution of root respiration to soil respiration ranged from 31% in October to 51% in August of 2004, and from 45% to 49% from April to June 2005.