Individual personality and the spatial distribution of groups of grazing animals: An example with sheep

Impacts of individual personality on group distribution were investigated using sheep (Ovis aries) as a model. In an indoor exploration test, individuals who visited <4 (out of 6) objects in a novel environment were classified as ‘shy’ (n = 10), and those who visited 5 or 6 objects were classified as ‘bold’ (n = 10). Nine weeks later, using a series of groups (n = 40) of either 5 shy or 5 bold sheep, we measured distribution at pasture and responses to disturbance and the approach of a human handler. When grazing undisturbed, the mean nearest neighbour distance and spread (minimum convex hull area) of shy groups were less than those of bold groups, with shy individuals moving towards one another more often. Shy groups explored a smaller area than bold groups. When disturbed, shy sheep were more likely to stop grazing and move closer together. Shy sheep kept further away from the handler and moved faster when driven. The results demonstrate a link between personality and group distribution, suggesting that our ‘shy’ and ‘bold’ individuals may occupy different positions on the shy-bold continuum documented for other species. We discuss implications for diet composition and impacts on vegetation grazed by animals with different personalities.     

A climate for speciation: rapid spatial diversification within the Sorex cinereus complex of shrews

The cyclic climate regime of the late Quaternary caused dramatic environmental change at high latitudes. Although these events may have been brief in periodicity from an evolutionary standpoint, multiple episodes of allopatry and divergence have been implicated in rapid radiations of a number of organisms. Shrews of the Sorex cinereus complex have long challenged taxonomists due to similar morphology and parapatric geographic ranges. Here, multi-locus phylogenetic and demographic assessments using a coalescent framework were combined to investigate spatiotemporal evolution of 13 nominal species with a widespread distribution throughout North America and across Beringia into Siberia. For these species, we first test a hypothesis of recent differentiation in response to Pleistocene climate versus more ancient divergence that would coincide with pre-Pleistocene perturbations. We then investigate the processes driving diversification over multiple continents. Our genetic analyses highlight novel diversity within these morphologically conserved mammals and clarify relationships between geographic distribution and evolutionary history. Demography within and among species indicates both regional stability and rapid expansion. Ancestral ecological differentiation coincident with early cladogenesis within the complex enabled alternating and repeated episodes of allopatry and expansion where successive glacial and interglacial phases each promoted divergence. The Sorex cinereus complex constitutes a valuable model for future comparative assessments of evolution in response to cyclic environmental change.     

Analysis of spatial point patterns in nuclear biology

There is considerable interest in cell biology in determining whether, and to what extent, the spatial arrangement of nuclear objects affects nuclear function. A common approach to address this issue involves analyzing a collection of images produced using some form of fluorescence microscopy. We assume that these images have been successfully pre-processed and a spatial point pattern representation of the objects of interest within the nuclear boundary is available. Typically in these scenarios, the number of objects per nucleus is low, which has consequences on the ability of standard analysis procedures to demonstrate the existence of spatial preference in the pattern. There are broadly two common approaches to look for structure in these spatial point patterns. First a spatial point pattern for each image is analyzed individually, or second a simple normalization is performed and the patterns are aggregated. In this paper we demonstrate using synthetic spatial point patterns drawn from predefined point processes how difficult it is to distinguish a pattern from complete spatial randomness using these techniques and hence how easy it is to miss interesting spatial preferences in the arrangement of nuclear objects. The impact of this problem is also illustrated on data related to the configuration of PML nuclear bodies in mammalian fibroblast cells.     

An analysis on the spatial distribution patterns of basidiocarps of Agaricales in aCastanopsis-dominated forest in Kyoto

Spatial distribution patterns of basidiocarps of Agaricales were studied in aCastanopsis-dominated forest in Kyoto. Sixty-seven species were recorded, of which 45 species and 99% of total dry weight were ectomycorrhizal fungi belonging to Amanitaceae, Cortinariaceae, Russulaceae, Boletaceae and Strobilomycetaceae. The data were analyzed statistically by using the m-m regression method. Three distribution patterns were recognized: aggregated, random and uniform. Although total basidiocarps were distributed randomly, basidiocarps of most species showed aggregated distributions, suggesting mycelium of ectomycorrhizal and saprotrophic fungi extend in a limited area in the soil. The degree of aggregation was different among species and this difference was suggested to reflect the difference of niche among the species.     

An evaluation of the analysis system of video transects used to sample subtidal epibiota

Two popular methods of benthic cover estimation (the point intercept technique with two sets of position points, and digital interactive color segmentation) were compared with an alternative method of digital cover estimation using Bezier curves as a tool for outlining the objects on an images and AutoCAD® software for the final evaluation of abundance. The comparison was done using still video images obtained from two 10-m transects on subtidal rocks off the Rimsky-Korsakov islands in the Sea of Japan (Russia). Ten rectangular sectors (1×0.4 m each) selected randomly within both video transects were analyzed. One-way ANOVA for repeated measurements was used to test the differences between methods. The point intercept technique differed significantly from both methods of digital estimation and had an essential positive bias. The Tukey multiple comparison test revealed the differences among digital estimation methods in the species, which have the complicated color with many contrast spots. The proposed approach using Bezier curves has an advantage over the interactive color segmentation if the objects under selection are lit at different levels or have a contrast coloration or are hidden by canopy organisms. Besides, estimation of cover in the field of AutoCAD® software is more precise and takes less time than that obtained using a scaled grid, available for automatically segmented species. The results showed that digital cover estimation using Bezier curves and AutoCAD® software is a convenient method for analyzing benthic samples at large spatial scales.     

Adaptive intraspecific divergence: an example using the animal cytochrome b gene

The topologies of phylogenetic trees characterized by a high level of intraspecific divergence between the phylogenetic DNA groups (clades) are often explained in terms of the theory of Pleistocene refugia. To elucidate the issue of the adaptive role of intraspecific divergence, the changes in the physicochemical properties of amino acids in the course ofcladogenesis (MM01 model of the TreeSAAP 3.2 package) were analyzed in this work using as an example the nucleotide sequences of the cytochrome b gene in some species of northern animals (lemmings, redbacked voles, chipmunks, flying squirrels, ermines). It was shown that the process of intraspecific divergence was rarely accompanied by radical amino acid substitutions in cytochrome b caused by adaptation (directional selection). In connection with this, the hypothesis is discussed according to which the adaptive variants formed in the species at the peak of cold were lost with climatic warming due to the drift or selection against individuals adapted to cold.     

A computational perspective on the neural basis of multisensory spatial representations

We argue that current theories of multisensory representations are inconsistent with the existence of a large proportion of multimodal neurons with gain fields and partially shifting receptive fields. Moreover, these theories do not fully resolve the recoding and statistical issues involved in multisensory integration. An alternative theory, which we have recently developed and review here, has important implications for the idea of 'frame of reference' in neural spatial representations. This theory is based on a neural architecture that combines basis functions and attractor dynamics. Basis function units are used to solve the recoding problem, whereas attractor dynamics are used for optimal statistical inferences. This architecture accounts for gain fields and partially shifting receptive fields, which emerge naturally as a result of the network connectivity and dynamics.     

Temporal and spatial patterns of mass flowerings on the Malay Peninsula

We propose a hypothesis to explain the temporal and spatial patterns of mass flowerings in dipterocarp tree species on the Malay Peninsula. The literature on these mass flowerings reveals that during 1980-2002 at least 11 flowerings occurred at irregular intervals of 1-6 yr in a lowland rain forest. Five of them were typical mass flowerings-a high density of flowering trees and the characteristic sequential flowering of Shorea species. The 11 flowerings were classified into two flowering times: spring and autumn. There is evidence that low temperature and drought triggered the flowerings. Therefore, the seasonality of mass flowerings is characterized by the annual patterns of rainfall and low temperature. In addition, changes in El Ni?o-Southern Oscillation (ENSO) may play important roles in determining the supra-annual occurrence of mass flowerings. Flowering surveys on the Malay Peninsula implied that regions with spring or autumn mass flowerings corresponded geographically to those regions that had one cool season (December-February) or two (December-February and June-August), respectively. This finding anticipates the seasonal pattern and geographical distribution of mass flowerings on the Malay Peninsula.     

Are the spatial patterns of weeds scale-invariant?

In previous empirical and modelling studies of rare species and weeds, evidence of fractal behaviour has been found. We propose that weeds in modern agricultural systems may be managed close to critical population dynamic thresholds, below which their rates of increase will be negative and where scale-invariance may be expected as a consequence. We collected detailed spatial data on five contrasting species over a period of three years in a primarily arable field. Counts in 20×20 cm contiguous quadrats, 225,000 in 1998 and 84,375 thereafter, could be re-structured into a wide range of larger quadrat sizes. These were analysed using three methods based on correlation sum, incidence and conditional incidence. We found non-trivial scale invariance for species occurring at low mean densities and where they were strongly aggregated. The fact that the scale-invariance was not found for widespread species occurring at higher densities suggests that the scaling in agricultural weed populations may, indeed, be related to critical phenomena.     

Not so divided: the common basis of plant and animal cell division

Plant cells do not have centrioles and their mitosis is frequently likened to the chromosome-based mechanism seen in acentriolar animal cells. However, this is a false analogy. Although plants can use this mechanism, they generally divide by a method that uses bipolar mitotic caps, which is more similar to the canonical centrosome-based method of animals.     

An investigation of the population ecology of syntopic shrews inhabiting water-cress beds

The population ecology of the shrews Neomys fodiens, Sorex araneus and S. minutus living syntopically in an area of commercial water-cress beds was investigated by live-trapping over a two-year period. The shrew population comprised 52% 5. araneus , 31% N. fodiens and 17% S. minutus. Sorex araneus was the most numerous species in all seasons. Peak numbers of shrews occurred in summer with low numbers in the ensuing winter. Input of new individuals was high, especially of N. fodiens which exceeded 60% in most months. Survival in the study area never exceeded 8 months in N. fodiens and 11 months in S. araneus. Both species suffered approximately 50% mortality and emigration in the first two months of life. Apart from a few, more nomadic, shrews, N. fodiens and S. araneus seemed quite sedentary during trapping periods, moving a mean distance of 13.7 m and 17.2 m between successive captures, respectively. The relatively low numbers of recaptures of N. fodiens at successive trapping periods indicated nomadic behaviour. Both species were more active during darkness than during daylight, and were more active in spring and summer than in winter. High turnover of the shrew population was attributed to mortality and emigration. Emigration was possibly encouraged by competition for space, particularly for nesting sites.     

Implications of the spatial variability of macroinvertebrate communities for monitoring of ephemeral lakes. An example from turloughs

Turloughs, ephemeral water bodies associated with karstified limestone, are an important habitat found in the West of Ireland. They are a priority habitat under the European Habitats Directive (92/43/EEC) and are groundwater-dependent habitats under the European Water Framework Directive (2000/60/EC; WFD). Sampling to meet the objectives of either Directive requires discrimination of inherent natural variation from anthropogenically induced disturbances and accounting for both spatial and seasonal patterns of biotic distribution. This study reports within- (submerged grassland) and between-habitat (submerged and emergent grassland) variability of macroinvertebrate communities in six turloughs. Two different habitat types were sampled from two turloughs in April 2007, and further assessment of spatial pattern in commonly found submerged grassland habitat was determined from four additional turloughs in spring 2008. While cluster analysis and non-metric multidimensional scaling identified differences in macroinvertebrate community structures between habitats in one out of two turloughs, congruence of invertebrate communities was, nevertheless, greater within than among turloughs. Within-habitat variability of macroinvertebrate communities across sampling locations of submerged grassland habitat was sufficiently low so that samples collected at any location of a turlough can provide a reliable metric of the macroinvertebrate community of a turlough as a whole. A standardized submerged grassland sampling approach for routine turlough sampling is recommended as a pressure response method to fulfil the requirements of the WFD. For a comprehensive conservation assessment, however, as demanded under the EC Habitats Directive, we suggest a multi-habitat sampling approach to obtain a thorough assessment of turlough macroinvertebrate biodiversity.     

Optimization model of spatial population structure: example of poplar moth laying eggs on leaves

The authors analyze spatial distribution and survival of populations of poplar moth Litchcolletis populifoliella Tr. on its feeding plant--balsam poplar Populus balsamifera. Imago of the moth glue its eggs on the leaves thus determining the future location of their offspring on the host plant. Spatial distribution of eggs on leaf surface and distribution of leaves according egg numbers are not random. On the short distance from each egg the average number of eggs is less, than it should be in case of random distribution. While this distance increases up to some particular value the occurrence of eggs is higher than random. Thus, the eggs of moth are located by groups on the leaf surface. Within each group eggs are situated not very close to each other, this allowing larvae to lower competition for common resource. It is suggested that on the same feeding plant individuals have different interactions: competition, caused by limited quantity of resource and cooperation that is necessary to resist leaf defensive (antibiosis) reaction.     

小菜蛾幼虫空间格局的地统计学分析

应用地统计学方法分析了小菜蛾Plutellaxylostella (L .)幼虫空间格局 ,建立了东西和南北 2个方向上多个半变异函数曲线模型。结果表明 ,在菜花 (Brassicaolenaceavar.botrylis)和早甘蓝 (Brassisaoleracea)地中小菜蛾幼虫种群的半变异函数曲线皆为球形 ,其空间格局为聚集型 ;小菜蛾幼虫在菜花上和在早甘蓝上的空间变程分别为 0 62～ 1 5 9m和 2 47～ 5 98m ,空间不连续性强度分别为 0 8779～0 9999和 0 862 1～ 0 91 2 4。     

Tree-line changes along the Andes: implications of spatial patterns and dynamics

The Andes provide an extensive latitudinal and topographical framework for studying the factors that control the spatial patterns of forests (timberlines) and their species components expressed through the presence of tree growth forms (tree lines). Despite consistent overall similarities in landscape patterns, many processes must be unique, given the dramatic differences in species richness and biophysical constraints along the Andes. In all cases evaluated to date, morphological plasticity is a common trait of plant species that dominate at tree lines. In fact, many changes observed can be related to species-specific traits. Physiological limitations on tree growth form only explain species limits, while disturbances and cyclical climate fluctuations interact to affect many landscape patterns. Over long periods of time, tree lines provide unique habitats and perhaps opportunities for speciation. Understanding the spatial organization of tree-line dynamics is one viable research approach for evaluating the likely past fluxes and possible future changes.     

Spatial organization in a dimorphic ant: caste specificity of clustering patterns and area marking

Living in groups constitutes the root of social organizationin animals. Likewise, the spatial aggregation between membersof insects societies plays a crucial role in social cohesionand division of labor, namely, in polymorphic ant species. Inthe present paper, we show caste-specific aggregation patternsin the strictly dimorphic Pheidole pallidula ant species. Weinvestigate the influence on the clustering of ants exertedby direct contacts between nest mates as well as by indirectcues through chemical marking. In a homogeneous environmentdeprived of chemical cues, majors show a higher aggregationlevel than minors and a centripetal behavior. By contrast, minorsare more scattered in the experimental arena and display a centrifugalbehavior. In addition, area marking laid by minors enhancestheir own aggregative behavior while contributing to the localizationof the spontaneously aggregating majors. Such differences inaggregative patterns as well as their adaptive value have tobe coupled with the mobility level and the task performanceefficiency of each worker caste. Contrary to majors that arelikely to aggregate, highly mobile minors, scattered insideand outside the nest colony, can detect colony needs and cancarry out most of the daily tasks for which they are more efficientthan majors.     

Analysis of structural basis of information processing in basal ganglia: spatial organization of the thalamo-striatal projections in the dog brain

Distribution of neurones labelled in a retrograde way, studied in functionally different dog's thalamic nuclei, elucidated anatomical aspects of functional heterogeneity of the basal ganglia and of integrative information processing, as well as the organization of adaptive behaviour mechanisms.