Development of nodule bacteria in soil

The rate of growth of a population of nodule bacteria in soil and the time it takes for the cell generation depend on the content and accessibility of necessary nutrient substances. The periods of adaptation, active growth, and stabilization of the population number in the course of growth of a population are typical of soddy-podzolic continuous-cultivated soil. The duration of each period is determined by a sum of ecological factors.     

Factors of multiple resistance to antibiotics in nodule bacteria]

Multiple resistance to antibiotics (penicillin, levomycetin, neomycin, tetracycline) was found in 15% of collection strains of nodule bacteria and in strains isolated from natural environment.     

Growth of saprotrophic fungi and bacteria in soil

Bacterial and fungal growth rate measurements are sensitive variables to detect changes in environmental conditions. However, while considerable progress has been made in methods to assess the species composition and biomass of fungi and bacteria, information about growth rates remains surprisingly rudimentary. We review the recent history of approaches to assess bacterial and fungal growth rates, leading up to current methods, especially focusing on leucine/thymidine incorporation to estimate bacterial growth and acetate incorporation into ergosterol to estimate fungal growth. We present the underlying assumptions for these methods, compare estimates of turnover times for fungi and bacteria based on them, and discuss issues, including for example elusive conversion factors. We review what the application of fungal and bacterial growth rate methods has revealed regarding the influence of the environmental factors of temperature, moisture (including drying/rewetting), pH, as well as the influence of substrate additions, the presence of plants and toxins. We highlight experiments exploring the competitive and facilitative interaction between bacteria and fungi enabled using growth rate methods. Finally, we predict that growth methods will be an important complement to molecular approaches to elucidate fungal and bacterial ecology, and we identify methodological concerns and how they should be addressed.     

Effect of ultraviolet rays on the activity of clover nodule bacteria]

The effect of UV on the survival, morphological variability, and effectiveness was studied with nodule bacteria of clover, strain 374a. The survival of the strain directly depended on the dose of UV rays, being 43.3% at 130 erg/mm2 and 0.000022% at 22,900 erg/mm2. UV irradiation yielded two morphological types of colonies; they differed by the production of slime which was less at higher doses of UV (15,970 to 22,900 erg/mm2). Variants with either positive or negative effectiveness were obtained by the action of UV. The positive variants increased the crop of clover by 21-60%, as compared with the parent strain 347a, while the negative variants decreased it by 18.3-35%.     

Genetic resources of nodule bacteria

Nodule bacteria (rhizobia) form highly specific symbiosis with leguminous plants. The efficiency of accumulation of biological nitrogen depends on molecular-genetic interaction between the host plant and rhizobia. Genetic characteristics of microsymbiotic strains are crucial in developing highly productive and stress-resistant symbiotic pairs: rhizobium strain-host plant cultivar (species). The present review considers the issue of studying genetic resources of nodule bacteria to identify genes and their blocks, responsible for the ability of rhizobia to form highly effective symbiosis in various agroecological conditions. The main approaches to investigate of intraspecific and interspecific genetic and genomic diversity of nodule bacteria are considered, from MLEE analysis to the recent methods of genomic DNA analysis using biochips. The data are presented showing that gene centers of host plants are centers of genetic diversification of nodule bacteria, because the intraspecific polymorphism of genetic markers of the core and the accessory rhizobial genomes is extremely high in them. Genotypic features of trapped and nodule subpopulations of alfalfa nodule bacteria are discussed. A survey of literature showed that the genomes of natural strains in alfalfa gene centers exhibit significant differences in genes involved in control of metabolism, replication, recombination, and the formation of defense response (hsd genes). Natural populations of rhizobia are regarded as a huge gene pool serving as a source of evolutionary innovations.     

Conjugative transfer of plasmid DNA between bacteria in soil]

Conjugative transfer of plasmid RP4 between populations of azospirilla and between Escherichia coli and Azospirillum brasilense in nonsterile soil has been investigated. The process of genetic exchange was realized at the early stages of interpopulational interactions, further on the process intensity was obviously rather low. Population dynamics of azospirilla transconjugates in soil depends on the presence or the absence of additional food substrate.     

The population genetics of nodule bacteria

The data are reviewed on the population structure and evolutionary dynamics of the nodule bacteria (rhizobia) which are among the most intensively studied microorganisms. High level of the population polymorphism was demonstrated for the rhizobia populations using the enzyme electrophoresis (MLEE profiles). The average value of Nei's coefficient of heterogeneity (H = 1 - sigma pi2 [n/(n - 1)]) were: 0.590 for rhizobia (Rhizobium, Bradyrhizobium), 0.368 for enterobacteria (Escherichia, Salmonella, Shigella) and 0.452 for pathogenic bacteria (Bordetella, Borrelia, Erysipelothrix, Haemophilus, Helicobacter, Listeria, Mycobacterium, Neisseria, Staphylococcus) populations. In spite of being devoid of the effective systems for the gene conjugative transfer, many rhizobia populations possess an essentially panmictic structure. However, the enterobacteria populations in which the gene transfer may be facilitated due to the conjugative F- and R-factors, usually display the clonal population structure. The legume host plant is proved to be a key factor that determines the high levels of polymorphism and of panmixis as well as high evolutionary rates of the symbiotic bacteria populations. The host may ensure: a) an increase in mutation and gene transfer frequencies; b) stimulation of the competitive (selective) processes in both symbiotic and free-living rhizobia populations. A "cyclic" model of the rhizobia microevolution is presented which allows to assess the inputs the interstrain competition for the saprophytic growth and for the host nodulation into evolution of a plant-associated rhizobia population. The nodulation competitiveness in the rhizobia populations is responsible for the frequency-dependent selection of the rare genotypes which may arise in the soil bacterial communities as a result of the transfer of symbiotic (sym) genes from virulent rhizobia strains to either avirulent rhizobia or to the other (saprophytic, phytopathogenic) bacteria. Therefore, the nodulation competitiveness may ensure: a) panmictic structure of the natural rhizobia populations; b) high taxonomic diversity of rhizobia which was apparently caused by a broad sym gene expansion in the soil bacterial communities. The kin selection models are presented which explain evolution of the "altruistic" (essential for the host plant, but not for the bacteria themselves) symbiotic traits (e.g., the ability for symbiotic nitrogen fixation and for differentiation into non-viable bacteroids) in the rhizobia populations. These models are based on preferential multiplication of the nitrogen-fixing clones either in planta (due to an elevated supply of the nitrogen-fixing nodules with photosynthates) or ex planta (due to a release of the rhizopines from the nitrogen-fixing nodules). Speaking generally, interactions with the host plants provide a range of mechanisms increasing a genetic heterogeneity and an evolutionary potential in the associated rhizobia populations.     

Growth and development of extreme-thermophilic bacteria at 70 degrees]

Nine cultures of non-sporeforming gram-negative extreme-thermophilic bacterium Thermus flavus have been isolated from hot springs of Kamchatka. Their optimal growth temperature on a solid potato medium was 70 to 76 degrees C, and on a liquid medium (20 per cent potato broth containing 0.5 per cent peptone and 0.1 per cent yeast extract) 70 degrees C. The minimum time of generation of the bacterium, strain 71, growing on the liquid medium at 70 degrees C, was 52 minutes. Other extreme-thermophilic cultures differ from the strain 71 by a lower growth rate. The maximum biomass yield was 1.96 g per litre of the medium after 6 to 9 hours of growth. The extreme-thermophilic bacteria of Kamchatka are similar to those from the hot springs of Japan.