Isolation of a novel RNA-binding protein and its association with a large ribonucleoprotein particle present in the nucleoplasm of tobacco cells

A cDNA encoding a protein with a consensus sequence-type RNA-binding domain (CS-RBD) has been isolated from a Nicotiana sylvestris cDNA library. The deduced protein (designated RZ-1) contains CS-RBD in its N-terminal half, arginine/aspartic acid repeats in its center and a glycine-rich C-terminal region in which a zinc finger motif of the CCHC type is present. The corresponding gene appears to be expressed constitutively in all tobacco organs. Immunocytochemical assays revealed that RZ-1 is localized in the nucleoplasm of tobacco cultured cells. Glycerol gradient fractionation of tobacco nuclear lysates showed that RZ-1 is associated with a large ribonucleoprotein particle of around 60 S in size. Nucleic acid-binding assays indicated that RZ-1 binds preferentially to poly (G) and both the CS-RBD and glycine-rich region are necessary for its binding activity. A possible role of RZ-1 is discussed.     

Identification of a hybrid-specific expressed gene encoding novel RNA-binding protein in wheat seedling leaves using differential display of mRNA

A hybrid-specific expressed cDNA fragment, designated as AG5, has been identified in wheat seedling leaves using differential mRNA display. AG5 contains an open reading frame (ORF) encoding 183 amino acid residues. Comparison with amino acid sequences in GenBank revealed that the AG5 protein is homologous to a group of Gly-rich proteins with consensus sequence-type RNA-binding domains (CS-RBD). Structural analysis showed that AG5 protein contains five motifs, including a consensus sequence-type RNA-binding domain near its N-terminus, arginine/aspartic acid repeats and a Gly-rich region in its center, a Cys-X₂-Cys-X₄-His-X₄-Cys (CCHC) zinc finger motif in the Gly-rich region, and TrySer₂ArgAsp₂Arg repeats towards its C-terminus. Of all previously described RNA-binding proteins, only RZ-1 from tobacco has a similar structure to the AG5 protein, but RZ-1 lacks a TrySer2ArgAsp2Arg repeat motif, indicating that the two proteins may belong to a family of closely related proteins in plants. The possible role of AG5 and its relation to wheat heterosis are discussed. Received: 21 November 1999 / Accepted: 20 March 2000     

A cDNA Encoding the 57 kDa Subunit of a Cytokinin-Binding Protein Complex from Tobacco: the Subunit Has High Homology to S-Adenosyl-L-Homocysteine Hydrolase

130 kDa cytokinin-binding protein complex (CBP130) is a majorcytokinin binding entity in tobacco leaves (Nicotiana sylvestris)and contains two protein species of 57 and 36 kDa [CBP57 andCBP36, Mitsui and Sugiura (1993) Plant Cell Physiol. 34: 543].We have determined partial amino acid sequences of CBP57 andisolated cDNAs encoding the protein from a tobacco cDNA libraryusing an oligonucleotide probe. Sequence analysis revealed significanthomology between CBP57 and S-adenosyl-L-homocysteine hydrolasefrom other organisms, which catalyzes the reversible hydrolysisof S-adenosyl-L-homocysteine, a methyltransferase inhibitor.CBP57 contains an additional sequence of 41 amino acids whichis not present in animal and slime mold Sadenosyl-L-homocysteinehydrolases. This additional sequence is also found in the parsleyand Rhodobacter enzymes, suggesting that it is unique to photosyntheticorganisms. CBP57 is encoded by more than one nuclear genes intobacco. Northern and western blot analyses revealed that thelevel of expression of the genes is high in roots and low inleaves. They are also expressed in cultured tobacco cells. Wediscuss the possibility that at least some of the physiologicaleffects of cytokinin are mediated through the control of methylation/demethylationby regulating the intracellular concentration of S-adenosyl-L-homocysteinevia the hydrolase. (Received June 24, 1993; Accepted August 14, 1993)     

Structure and subcellular localization of a small RNA-binding protein from tobacco

In this study, a cDNA encoding a small RNA-binding protein was isolated from a Nicotiana sylvestris cDNA library. The predicted protein (RGP-3) is 144 amino acid residues long, and contains a consensus sequence-type RNA binding domain (CS-RBD) of 83 amino acids and a short glycine-rich region of 15 amino acids. RGP-3 synthesized in Escherichia coli has high affinity for poly(U). Immunocytochemical analysis indicated that RGP-3 is localized in the nucleoplasm, and that RGP-1b, a related protein reported previously, is localized in the nucleolus. Possible roles of these proteins in pre-mRNA or pre-rRNA processing are discussed.     

Nucleotide Sequence of cDNA for Concanavalin A from Canavalia gladiata Seeds

We have determined the nucleotide sequence of Con A cDNA forconcanavalin A (Con A) from Canavalia gladiata using a plasmid(pCONAl) that was isolated previously [Eur. J. Bio-chem. (1988)170: 515-520]. This sequence contains a 870-bp open readingframe, a 63-bp 5'-un-translated region and a 99-bp 3'-untranslatedregion. DNA blot analysis suggested that Con A is encoded bya small gene family. In contrast to the case of canavalin, thenucleotide sequence and the genomic organization of Con A geneare highly conserved between C. gladiata and C. ensifor-mis. (Received August 4, 1988; Accepted November 21, 1988)     

Characterization of a plasma membrane-associated phosphoinositide-specific phospholipase C from soybean

Phosphoinositide-specific phospholipase C (PI-PLC) is a key signal transducing enzyme which generates the second messengers inositol trisphosphate and diacylglycerol in mammalian cells. A cDNA clone (PI-PLC1) encoding a phosphoinositide-specific phospholipase C was isolated from soybean by screening a cDNA expression library using an anti-(plasma membrane) serum. Genomic DNA gel blot analysis suggested that the corresponding gene is a member of a multigene family. The deduced amino acid sequence of the soybean PI-PLC1 isozyme contains the conserved X and Y regions, found in other PI-PLCs. It is closely related to mammalian δ-type PI-PLCs, Dictyostelium discoideum PI-PLC and yeast PI-PLC1 in terms of the arrangement of the conserved region. Unlike mammalian δ-type PI-PLCs and yeast PI-PLC1, the putative Ca²⁺-binding site of the soybean PI-PLC1 is located in the region spanning the X and Y domains, and the N-terminal region is truncated. FLAG epitope-tagged PI-PLC1 fusion protein purified from transgenic tobacco plants showed phosphoinositide-specific phospholipase C activity. Heterologous expression of the soybean PI-PLC1 cDNA in a yeast PI-PLC1 deletion mutant complemented the lethality phenotype of haploid PI-PLC1 disruptants. Immunoblot analysis of the cell fractions prepared from transgenic tobacco plants over-expressing the FLAG epitope-tagged PI-PLC1 fusion protein indicated that the protein encoded by the PI-PLC1 cDNA was localized in the cytosol and plasma membrane.     

Ethylene-Induced Gene Expression of Osmotin-Like Protein, a Neutral Isoform of Tobacco PR-5, is Mediated by the AGCCGCC eft-Sequence

Osmotin-like protein (OLP) is a neutral isoform in the group5 pathogenesis-related (PR) tobacco proteins. The OLP gene,like the basic PR protein genes, is constitutively expressedin tobacco roots and cultured cells. OLP is not naturally presentin intact healthy leaves, but ethylene treatment induces a highaccumulation there. To study the mechanism of OLP gene expressionas induced by ethylene, we cloned the gene from Nicotiana sylvestris,an ancestor of N. tabacum. Sequence analysis showed that ithas no intron and that its promoter region contains two AGCCGCCsequences that are conserved in most basic PR-protein genes.The function of the AGCCGCC sequences in transgenic tobaccoplants that harbor the wild and mutated OLP promoter::GUS fusiongenes was analyzed. Mutation in the AGCCGCC sequences clearlyinhibited the GUS expression induced by ethylene, indicativethat the AGCCGCC sequence(s) is a DNA element(s) responsiveto ethylene. An EREBP2 protein, isolated as one of the proteinsbinding the AGCCGCC sequence of the tobacco rß-1,3-glucanasegene, also was found to bind to the AGCCGCC sequence(s) of OLPgene. These results suggest that the ethylene-induced expressionof OLP is regulated by trans-acting factor(s) common to basicPR-proteins. (Received November 13, 1995; Accepted January 17, 1996)     

A virus-inducible tobacco gene encoding a glycine-rich protein shares putative regulatory elements with the ribulose bisphosphate carboxylase small subunit gene

cDNA to an mRNA that is strongly induced in Samsun NN tobacco after tobacco mosaic virus (TMV) infection or salicylic acid treatment was used to probe a genomic blot and to screen a genomic library. The mRNA corresponds to a family of approximately eight genes, four of which were cloned. The sequence of the genes and flanking DNA in two clones was determined. One gene was found to contain an intron of 555 bp; S1-nuclease mapping studies indicated that this gene is expressed. The other gene is interrupted by an intron of 1,954 bp and is probably not expressed after TMV infection. The genes encode a protein of 109 amino acids with a putative N-terminal signal peptide of 26 amino acids. The protein contains a high proportion of glycine (25%) and charged amino acids (29%), suggesting that it may be a cell wall component. A comparison of the upstream sequences of the genes encoding the glycine-rich protein and the pathogenesis-related protein 1a showed only limited homology, although both genes are TMV- and salicylic acid-inducible. However, the upstream sequence of the glycine-rich protein gene contains a 64-bp inverted repeat that occurs in a similar position in the tobacco ribulose bisphosphate carboxylase small subunit gene.     

Cloning and promoter analysis of the cotton lipid transfer protein gene Ltp3(1)

A cotton Ltp3 gene and its 5' and 3' flanking regions have been cloned with a PCR-based genomic DNA walking method. The amplified 2.6 kb DNA fragment contains sequences corresponding to GH3 cDNA which has been shown to encode a lipid transfer protein (LTP3). The gene has an intron of 80 bp which is located in the region corresponding to the C-terminus of LTP3. The Ltp3 promoter was systematically analyzed in transgenic tobacco plants by employing the Escherichia coli beta-glucuronidase gene (GUS) as a reporter. The results of histochemical and fluorogenic GUS assays indicate that the 5' flanking region of the Ltp3 gene contains cis-elements conferring the trichome specific activity of Ltp3 promoter.     

小菜蛾化学感受蛋白基因PxylCSP1的克隆和表达

利用RT-PCR和RACE技术克隆到小菜蛾Plutella xylostella 化学感受蛋白（CSP）基因PxylCSP1（GenBank登录号: FJ361903）,其核苷酸序列全长405 bp,编码134个氨基酸残基,预测N-末端包含19个氨基酸组成的信号肽序列,估测其成熟蛋白分子量为13.56 kD,等电点为6.12。该基因编码氨基酸序列和其他鳞翅目昆虫CSP的氨基酸序列比对同源性较高（70%~80%）。RT-PCR结果表明PxylCSP1不仅存在于小菜蛾的触角中,还存在于头、足、腹和翅中。Real-time PCR结果表明PxylCSP1的表达水平因被测小菜蛾的性别、日龄、组织不同和交配与否而异。