趋磁细菌磁小体合成机制研究进展

趋磁细菌可在环境中吸收大量铁并在细胞内合成纳米级磁性颗粒—磁小体。比较几种趋磁细菌基因组特征,针对磁小体岛及与磁小体合成相关基因功能特点等方面,综述了当前磁小体合成机制的研究进展。     

趋磁细菌及磁小体在肿瘤治疗中的应用

提高抗肿瘤药物的靶向性是肿瘤治疗、降低药物副作用的重要手段。在肿瘤组织内部由于癌细胞的快速增殖致使其形成低氧区,低氧区会对多种肿瘤治疗方案产生耐受。趋磁细菌 (Magnetotactic bacteria, MTB) 是一类能在细胞内产生外包生物膜、纳米尺寸、单磁畴磁铁矿 (Fe3O4) 或硫铁矿 (Fe3S4) 晶体颗粒-磁小体的微生物的统称。在磁场的作用下,趋磁细菌可凭借鞭毛运动至厌氧区。趋磁细菌在动物体内毒性较低且生物相容性良好,其磁小体与人工合成的磁性纳米材料相比优势显著。文中在介绍趋磁细菌及其磁小体生物学特点、理化性能的基础上,综述了趋磁细菌作为载体偶联药物进入肿瘤内部,并通过感受低氧信号定位于肿瘤低氧区,以及趋磁细菌竞争肿瘤细胞铁源的研究进展,总结了磁小体运载化疗药物、抗体、DNA疫苗靶向结合肿瘤的研究进展,分析了趋磁细菌及磁小体肿瘤治疗中面临的问题,并对趋磁细菌和磁小体在肿瘤治疗中的应用进行了展望。     

趋磁细菌及磁小体的生物医学应用研究进展

近年来,趋磁细菌及其生物自身合成的磁小体由于良好的生物安全性逐渐被人们所认识,并被用于生物工程和医学应用研究。与人工化学合成磁性纳米颗粒相比,从趋磁细菌中提取的磁小体具有生物膜包被、生物相容性高、粒径均一及磁性高等优势。趋磁细菌因磁小体在其胞内呈链状排列,具有沿磁场方向泳动的能力,也被应用于各种应用研究。因此,综述了趋磁细菌及磁小体特性,并就最近的研究进展重点综述趋磁细菌和磁小体在生物工程及医学应用等领域的最新研究进展。     

趋磁细菌的磁小体

趋磁细菌是一类对磁场有趋向性反应的细菌,其菌体能吸收外界环境中铁元素并在体内合成包裹有膜的纳米磁性颗粒Fe₃O₄或Fe₃O_{3S4晶体即磁小体。综述了趋磁细菌的磁小体生物矿化的条件,以及趋磁细菌的铁离子吸收、磁小体囊泡的形成、铁离子的转运到磁小体囊泡及囊泡中受控的Fe3O4生物矿化的分子生物学和生物化学等方面的研究进展,重点介绍了趋磁细菌磁小体合成机制的研究进展及未来研究磁小体的发展方向。}     

趋磁细菌及其应用于生物导航的研究进展

趋磁性细菌是一种由于体内含有对磁场具有敏感性的磁小体,而能够沿着磁力线运动的特殊细菌,本文综述了趋磁细菌的分布、分类、特性、磁小体研究以及趋磁细菌在生物导航方面的研究进展。     

趋磁细菌及其应用于生物导航的研究进展

趋磁性细菌是一种由于体内含有对磁场具有敏感性的磁小体,而能够沿着磁力线运动的特殊细菌,本文综述了趋磁细菌的分布、分类、特性、磁小体研究以及趋磁细菌在生物导航方面的研究进展.     

趋磁细菌多样性与应用研究进展 *

趋磁细菌是一类可以沿磁场方向进行运动的微生物统称,在细胞内合成由生物膜包被、链状排列、纳米级、单磁畴的磁铁矿 (Fe₃O₄) 或胶黄铁矿 (Fe₃S₄) 的磁小体颗粒。趋磁细菌在自然界分布广泛且多样性丰富,不仅在水环境和沉积环境的铁、硫、碳、氮、磷等元素生物地球化学循环中发挥重要作用,而且在污染治理、疾病诊断和治疗等方面有较好的应用。趋磁细菌磁小体由生物膜包被并在细胞调控下合成,是一类新型的生物源磁性纳米材料。相比常规化学合成的磁性纳米颗粒,磁小体具有大小均一、生物相容性高、兼具化学修饰和基因工程修饰功能等特点,在磁性分离、固定化酶、食品检测、环境监测、医学诊断、磁共振成像、磁热疗和靶向治疗等方面具有广阔的应用前景。在介绍趋磁细菌多样性研究的基础上,综述了趋磁细菌和磁小体的制备、修饰及其应用的最新进展,并对未来的研究进行了展望。     

趋磁细菌概述及应用进展

趋磁细菌是一类具有趋磁行为的革兰氏阴性茵的统称,其趋磁特性是由于菌体内含有磁小体。磁小体是由膜包被的纳米尺寸单磁畴颗粒,在菌体内多呈链状排列。自被发现以来,趋磁细菌及磁小体已逐步成为新的生物资源被广泛研究于材料学、医学、生物学、物理学、地质学等多个学科领域,并在仿生学、生态学、医学、地质学、工业处理、卫生检验等多个领域得到应用。主要介绍了趋磁细菌的生物特征、研究发展进程,以及近年来在多个学科领域的研究与应用。     

趋磁螺菌中磁小体链装配相关基因及其功能

趋磁细菌(MTB)依赖于体内磁小体结构在磁场中取向,多个磁小体以一定的组 织形式排列是形成菌体内生物磁罗盘的重要环节．多数趋磁细菌中磁小体成链排列,有效增加了细胞磁偶极矩,从而使菌体表现出在环境磁场中定向的能力．趋磁螺菌M. magneticum AMB－1和M. gryphiswaldense MSR－1中磁小体均沿细胞长轴形成一条磁 小体链．通过对相关基因突变体表型的研究,结合对磁小体链形成过程的实时动态观 察,人们已初步了解MamJ、MamK和MamA等基因在磁小体链装配和维护过程中的功能．本文介绍了近年来趋磁螺菌磁小体链装配过程中重要功能性基因的研究进展,并重点分析了AMB-1和MSR-1中磁小体链装配的差异．     

趋磁细菌磁小体研究进展

趋磁细菌能在细胞内形成由膜包裹的纳米级单畴磁性颗粒——磁小体。磁小体的形成是受生物严格控制的矿化过程,包括铁离子的吸收、转运和结晶成核等。磁小体膜在磁铁矿（Fe3O4）晶体的形成中起着重要的作用。主要介绍近年来关于磁小体形成过程和参与这一过程的蛋白质等方面的一些重要研究进展。     

A Systems Model Approach to Determining Resilience Surrogates for Case Studies

Resilience theory offers a framework for understanding the dynamics of complex systems. However, operationalizing resilience theory to develop and test empirical hypotheses can be difficult. We present a method in which simple systems models are used as a framework to identify resilience surrogates for case studies. The process of constructing a systems model for a particular case offers a path for identifying important variables related to system resilience, including the slowly-changing variables and thresholds that often are keys to understanding the resilience of a system. We develop a four-step process for identifying resilience surrogates through development of systems models. Because systems model development is often a difficult step, we summarize four basic existing systems models and give examples of how each may be used to identify resilience surrogates. The construction and analysis of simple systems models provides a useful basis for guiding and directing the selection of surrogate variables that will offer appropriate empirical measures of resilience.     

A reduced muscle model and planar musculoskeletal model fit for the simulation of whole-body movements

Musculoskeletal models are made to reflect the capacities of the human body in general, and often a specific subject in particular. It remains challenging to both model the musculoskeletal system and then fit the modelled muscles to a specific human subject. We present a reduced muscle model, a planar musculoskeletal model, and a fitting method that can be used to find a feasible set of active and passive muscle parameters for a specific subject. At a minimum, the fitting method requires inverse dynamics data of the subject, a scalar estimate of the peak activation reached during the movement, and a plausible initial estimate for the strength and flexibility of that subject. While additional data can be used to result in a more accurate fit, this data is not required for the method solve for a feasible fit. The minimal input requirements of the proposed fitting method make it well suited for subjects who cannot undergo a maximum voluntary contraction trial, or for whom recording electromyographic data is not possible. To evaluate the model and fitting method we adjust the musculoskeletal model so that it can perform an experimentally recorded stoop-lift of a 15 kg box.     

Determination of gasoline range,diesel range,and mineral oil range organics in soils and water by flame lonization gas chromatography

This article describes a method for the determination of gasoline range, diesel range, and mineral oil range organics in soils and water. It represents the culmination of a series of efforts to go beyond typical GRO and DRO methodology currently available in the literature to include a quantitative determination of mineral oil organics having a boiling range up to C₄₄. It also is the result of an attempt to develop a cost‐effective method that enables the analyst to quantify three different types of hydrocarbon components in one GC run under conditions without a concentration step. Method performance is comparable to that of current protocols for GRO and DRO determinations and validated further by comparisons to certified standards and in‐house standards. Accuracy as percentage recovery for GRO in water is 82 to 84 and 91 to 92% for soils. Accuracy as percentage recovery for MRO in water is 84 to 102 and 75 to 80% for soils. Accuracy as percentage recovery for DRO in water is 78 to 100 and 71 to 90% for soils. Results from the analysis of in‐house standards and certified standards for DRO and MRO gave higher recoveries than was demonstrated in the MDL studies. The MDL for DRO in water is 31 mg/l and 14 mg/kg for soils. The MDL for GRO in water is 8 mg/l and 4 mg/kg for soils. For MRO in water, the MDL is 7 mg/l and for soils 10 mg/kg. Future proposed improvements to this method will involve updated software that will allow automatic blank subtraction, automatic calculation of surrogate recoveries and the automatic incorporation of dry weight factors in the final calculations for soils. In addition, a GRO method with a run time of only 24 min will be used routinely when only GRO analyses have to be performed.     

Estimation and confidence regions for multi-dimensional effective dose

The problem of finding confidence regions for multiple predictor variables corresponding to given expected values of a response variable has not been adequately resolved. Motivated by an example from a study on hyperbaric exposure using a logistic regression model, we develop a conceptual framework for the estimation of the multi-dimensional effective dose for binary outcomes. The k -dimensional effective dose can be determined by conditioning on k - 1 components and solving for the last component as a conditional univariate effective dose. We consider various approaches for calculating confidence regions for the multi-dimensional effective dose and compare them via a simulation study for a range of possible designs. We analyze data related to decompression sickness to illustrate our procedure. Our results provide a practical approach to finding confidence regions for predictor variables for a given response value.     

Risk Communications: Around the World Neural Network Models for Assessing Road Suitability for Dangerous Goods Transport

This article describes a methodology for assessing the degree of remedial action required to make short stretches of a roadway suitable for dangerous goods transport (DGT). The methodology is based on the evaluation of a set of variables that have a bearing on DGT risk. The large number of variables involved made it necessary to apply a supervised approach based on expert criteria. The result was a knowledge base that can be used both to estimate DGT risk for new stretches of roadway and to determine sources of risk without having to rely on an expert. A number of multivariate statistical analysis techniques were tested for the construction of the model, namely linear discriminant analysis with a prior reduction in dimensionality, multilayer perceptrons, and support vector machines. The results obtained from a test sample show that the support vector machines represented expert knowledge most reliably. A graphic representation of the risk index for a studied stretch of roadway results in a map of the level of DGT risk for that roadway.     

A Major Gene for Resting Metabolic Rate Unassociated with Body Composition: Results from the Québec Family Study

A major gene hypothesis for resting metabolic rate (RMR) was investigated using segregation analysis (POINTER) of data on families participating in Phase 2 of the Québec Family Study. Complete analyses were conducted on RMR adjusted for age, and also on RMR adjusted for age and other covariates, primarily fat mass (FM) and fat-free mass (FFM). Prior to adjustment for covariates, support for a major gene hypothesis was equivocal — i.e., there was evidence for either a major gene or a multifactorial component (i.e., polygenic and/or familial environment). The multifactorial model was preferred over the major gene model, although the latter did segregate according to Mendelian expectations. However, after the effects of FM and FFM were accounted for, a major gene effect was unambiguous and compelling. The putative locus accounted for 57% of the variance, affected 7% of the sample, and led to high values of RMR. The lack of a significant multifactorial effect suggested that the familial etiology of RMR adjusted for FM and FFM was likely to be entirely a function of the major locus. Comparing the RMR results from pre- and post-adjustment for FM and FFM suggests a plausible hypothesis. We know from earlier studies in this sample that there is a putative major gene for FM and a major non-Mendelian effect for FFM. The current study leads us to speculate that: (1) the gene(s) affecting body size and body composition also may have an effect on RMR, and further (2) removal of the effect of the major gene(s) for body size and composition allowed for detection of an additional major gene affecting only the RMR. Thus, RMR appears to be an oligogenic trait.     

Repetitive mating and female fitness in Dysdercus cardinalis (Hemiptera: Pyrrhocoridae)

Using three mating-treatment groups–pairing with a male for life, pairing with a male from adult emergence to first oviposition, and no pairing (virgin)–of Dysdercus cardinalis females in a laboratory study, the following results were obtained. Most of the virgin females did not lay eggs; those that did oviposited for the first time at a considerably older age than females in the other two groups. In a lifetime, females pairing with a male for life and those pairing with a male up to first oviposition produced essentially the same number of eggs, and this was more than 3.5 times the number of eggs laid by a virgin female. Virgin females produced an average of 1.3 clutches in a lifetime, compared with about 4.5 clutches produced by females in the other two groups. Reproductive span was significantly shorter, and fecundity per day of reproductive span significantly greater, for females pairing with males for life than for those pairing with a male up to first oviposition. Age at death was significantly different amongst females in different mating-treatment groups. Virgin females had the longest life, followed by females pairing with a male up to first oviposition and females pairing with a male for life, in that order. There was a positive correlation between lifetime gross reproduction and age at death for females pairing with a male for life. There was no relationship between these two characters for females pairing with a male up to first oviposition. Both females pairing with a male for life and those pairing with a male to first oviposition exhibited a significant inverse relationship between fecundity per day and age at death. The results obtained indicate that (1) mating is a prerequisite for normal gonadal activity in Dysdercus cardinalis , and (2) repetitive mating increases the rate of reproduction. This would reduce the mean age of parenthood which is inversely related to the intrinsic rate of increase.     

Testing and weighting characters

Published justifications for weighting characters in parsimony analyses vary tremendously. Some authors argue for weighting a posteriori, some for a priori, and especially those authors that rely on a falsificationist approach to systematics argue for non-weighting. To find a decision, while following the falsificationist approach, one first has to investigate the necessary conditions for the possibility of phylogenetic research to establish an empirical science sensu Popper. A concept of phylogenetic homology together with the criterion of identity is proposed, which refers to the genealogical relations between individual organisms. From this concept a differentiation of the terms character and character state is proposed, defining each character as a single epistemological argument for the reconstruction of a unique transformation event. Synapomorphy is distinguished from homology by referring to the relationship between species instead of individual organisms, thus the set of all synapomorphies constitutes a subset of the set of all homologies. By examining the structure of characteristics during character analysis and hypothesizing specific types of transformations responsible for having caused them, a specific degree of severity is assigned to each identity test. It thus provides a specific degree of corroboration for every hypothesis that successfully passed this test. Since the congruence criterion tests hypotheses of synapomorphy against each other on grounds of their degree of corroboration gained from the identity test, these different degrees of corroboration determine the specific weights given to characters and character state transformations before the cladistic analysis. This provides a reasonable justification for an a priori weighting scheme within a falsificationist approach to phylogeny. It also demonstrates the indispensable necessity of its application.     

一个可用于复杂大群体的可视化系谱绘制和分析软件

对于在遗传研究和家系研究中大的系谱结构图还很难分析。系谱的绘制通常是遗传性状的分析研究的第一步。系图可以反映整个群体的结构、每个个体之间的相互关系以及基因流的走向,便于理解遗传性状的本质。因为所用家系数目的增大和复杂性的增加,绘制1个清晰的系谱有时变得十分困难。因此开发了1种名为Pedigraph软件,可以解决这个问题。Pedigraph能够完成对于大的复杂的群体的系谱绘制工作,并能进行相应的系谱分析。初步的测试表明这个软件在研究动植物的遗传育种中是1个有用的工具,同时它也可以用于人类的群体和历史等方面的研究。