Mutational analysis of breast/ovarian cancer hereditary predisposition gene BRCA1 in Tunisian women

BRCA1 is a breast cancer susceptibility gene. Germline mutations in BRCA1 gene are found in 5 to 10% of breast cancer. The aim of this study is to screen the tunisian women with familial or sporadic breast cancer for BRCA1 gene mutations. The authors used the Protein Truncation Test (PTT) and DNA sequencing to detect BRCA1 gene mutations in 12 tunisian families with breast cancer and the Allele Specific Oligonucleotide-PCR (ASO-PCR) to detect the 185delAG and 1294del40 mutations in 150 tunisian women with sporadic breast cancer. A nonsens mutation was found, by PTT, in exon 11 of BRCA1 gene in one case of familial breast cancer. No mutation in the rest of exons was found by the DNA sequencing. The BRCA1 1294del40 mutation was found only in a patient with non familial breast cancer. The 185delAG mutation was absent in all cases of breast cancer. These data suggest that the germline mutation of BRCA1 is implicated in breast cancer in Tunisia and that the 185delAG mutation is absent in arab tunisian women.     

Association of Recklinghausen's disease, dental dystrophy and myopia in a Tunisian family

The authors describe a tunisian family including ten patients with neurofibromatosis. Four case reports present dental anomalies (amelogenesis imperfecta) and three have myopia. The authors believe there is no clinical or genetical relation between neurofibromatosis and this dental dystrophia; but myopia may be a clinical expression of Recklinghausen disease.     

Nitrogen effects on proteins, chlorophylls and fatty acids during the growth of Arthrospira platensis

Spirulina platensis (=Arthrospira platensis) is a tunisian strain which has been isolated for the first time in Oued Essed (Sousse, Sidi Bou Ali). Biomass evolution, proteins, chlorophylls and fatty acids composition of this alga were monitored by varying nitrogen concentrations in the culture medium. Nitrogen stress was provoked by adding sodium nitrate (NaNO3) in the culture medium with concentrations varying from 0 to 5 g/l. Results obtained showed that nitrogen depletion increased total proteins and total chlorophylls. The addition of NaNO3 (5g/l) led to an increase of total fatty acids amounts and modify fatty acids composition. Optimal quantities of palmitic, gamma -linolenic and oleic acids were obtained with NaNO3 free-cultures. Thus, the tunisian strain has valuable biological substances, worthy to determine the optimal conditions for its propagation.     

Isolation of Elaeagnus-compatible Frankia from soils collected in Tunisia

The occurrence and diversity of Frankia nodulating Elaeagnus angustifolia in Tunisia were evaluated in 30 soils from different regions by a Frankia-capturing assay. Despite the absence of actinorhizal plants in 24 of the 30 soils, nodules were captured from all the samples. Eight pure strains were isolated from single colonies grown in agar medium. On the basis of 16S rRNA and GlnII sequences, seven strains were clustered with Frankia, colonizing Elaeagnaceae and Rhamnaceae in two different phylogenetic groups while one strain described a new lineage in the Frankia assemblage, indicating that Frankia strains genetically diverse from previously known Elaeagnus-infective strains are present in tunisian soils. Genomic fingerprinting determined by rep-PCR, and tDNA-PCR-SSCP, confirmed the wide genetic diversity of the strains.     

A case of hemoglobin D Punjab in Tunisia. Characterization and structural study

Hb D Punjab is a hemoglobin abnormality due to the substitution of a glutamic acid by a glutamic on the hemoglobin beta chain: beta 121 Glu----Gln. Authors report here the first case of this rare variant in a tunisian family.     

The Simuliidae (Diptera, Nematocera) of Tunisia. II. Keys for the identification of species actually collected

The authors give keys for the knowledge of species of Simuliidae (larval, pupal and adult stages). The collected samples represented 44 localities situated on the main tunisian hydrographic networks.     

Syndrome of irregular maturation of the endometrium

Following their study on biopsies in a group of tunisian women the authors insist on the unchanged histologic and clinic characters of the irregular ripening syndrome of the endometrium, as described in 1928. They suggest a mediation by the oncocyte for the use of oestrogens in glandular site.     

Pseudophillipsia azzouzi nov. sp. Trilobite griffithididé Permien du Djebel Tebaga (Tunisie)

Pseudophillipsia azzouzi nov. sp., found by L. Memmi and J. David in the Dolomies superieures Series of the Djebel Tebaga, takes part of the Ps. sumatrensis-Group. Its stratigraphical position in the Kazanian-Pamirian boundary is in accordance with the global distribution of that Group. The tunisian species, characterized by its ornamentation (particularly of the pygidium), is also remarkable by its large size, twice that of the type-species.     

Total mercury levels in certain coastal fish]

In this study, we decided to scan some common edible fish species and find out by atomic absorption spectrophotometry their total mercury content, in order to have an idea on their contamination degree and know whether they are edible or can be risky for consumers. The results of our investigations gave us the evidence that total mercury content of several fish species catched at different tunisian harbourgs is beyond the WHO recommended maximum level, and thus, consumption of such fish is harmless.     

环境病毒的宿主鉴定技术进展

病毒是地球上丰度最高的微小生命粒子,通过调控宿主的群落结构、介导宿主死亡和参与水平基因转移等方式影响着生物地球化学循环和地球生命演化。近年来,宏基因组学的发展实现了在全球尺度上对环境病毒的大规模探索和研究,大量新的病毒基因组被发掘,病毒在全球生态过程和生物地球化学循环中的角色和贡献也得到进一步认知。病毒在环境中的重要作用是通过感染宿主实现的。然而,环境病毒的宿主鉴定工作远落后于环境病毒基因组测序研究。本文综述了目前病毒宿主鉴定的主要技术及其优缺点和应用场景,总结了病毒的宿主鉴定在病毒生态学研究和生物工程领域的重要价值,并初步展望了未来病毒宿主鉴定技术的发展方向。     

Virus Resistance in Cereals: Sources of Resistance, Genetics and Breeding

In cereals, soil-borne viruses transmitted by the plasmodiophorid Polymyxa graminis (e.g., Barley mild mosaic virus , Barley yellow mosaic virus or Soil-borne cereal mosaic virus ), have increased in importance due to the increase of the acreage infested and because yield losses cannot be prevented by chemical measures. Due to global warming, it is also expected that insect transmitted viruses vectored by aphids (e.g., Barley yellow dwarf virus , Cereal yellow dwarf virus ), leafhoppers ( Wheat dwarf virus ) or mites (e.g., Wheat streak mosaic virus ), will become much more important even in cooler regions. The environmentally most sound and also most cost effective approach to prevent high yield losses caused by these viruses is breeding for resistance. Therefore, in contrast to other reviews on cereal viruses, this study briefly reviews present knowledge on cereal-infecting viruses and emphasizes especially the sources of resistance or tolerance to these viruses and their use in molecular breeding schemes.     

Induction of Apoptosis by Influenza Virus

It has been postulated that virus-induced apoptosis is an important factor in pathogenesis caused by cytopathogenic viruses. Apoptosis is induced by both influenza A and influenza B viruses, which are cytopathogenic negative-strand RNA viruses. The importance of influenza viruses as worldwide pathogens in humans and domestic animals is well recognized. In this report, we review the current state of knowledge of the mechanism(s) of influenza virus-induced apoptosis. Several cellular factors and at least one virus-specific protein, the nonstructural protein NS1, have been implicated in influenza virus-induced apoptosis. However, the mechanism(s) of influenza virus-induced apoptosis are not well understood at the present time.     

Virome Profiling of Bats from Myanmar by Metagenomic Analysis of Tissue Samples Reveals More Novel Mammalian Viruses

Bats are reservoir animals harboring many important pathogenic viruses and with the capability of transmitting these to humans and other animals. To establish an effective surveillance to monitor transboundary spread of bat viruses between Myanmar and China, complete organs from the thorax and abdomen from 853 bats of six species from two Myanmar counties close to Yunnan province, China, were collected and tested for their virome through metagenomics by Solexa sequencing and bioinformatic analysis. In total, 3,742,314 reads of 114 bases were generated, and over 86% were assembled into 1,649,512 contigs with an average length of 114 bp, of which 26,698 (2%) contigs were recognizable viral sequences belonging to 24 viral families. Of the viral contigs 45% (12,086/26,698) were related to vertebrate viruses, 28% (7,443/26,698) to insect viruses, 27% (7,074/26,698) to phages and 95 contigs to plant viruses. The metagenomic results were confirmed by PCR of selected viruses in all bat samples followed by phylogenetic analysis, which has led to the discovery of some novel bat viruses of the genera Mamastrovirus, Bocavirus, Circovirus, Iflavirus and Orthohepadnavirus and to their prevalence rates in two bat species. In conclusion, the present study aims to present the bat virome in Myanmar, and the results obtained further expand the spectrum of viruses harbored by bats.     

Imaging and quantifying virus fluorescence signals on aquatic aggregates: a new method and its implication for aquatic microbial ecology

The development of accurate methods to detect and enumerate viruses is an important issue in aquatic microbial ecology. In particular, viruses attached to floating aggregates are a largely ignored field both in marine and inland water ecology. Data on the total abundance and the colonization of aggregates by viruses are rare, mainly due to methodological difficulties. In the present study, we used confocal laser scanning microscopy (CLSM) to resolve fluorescence signals of single viruses and bacterial cells in a complex three-dimensional matrix of riverine aggregates. CLSM in combination with different fluorochromes is a very promising approach for obtaining information both on the aggregate architecture and on the spatial distribution of viruses attached to fully hydrated aggregates. Aggregates from the Danube River harbored up to 5.39 × 10⁹ viruses cm⁻³. We discuss the problems associated with different methods such as sonication or directly counting viruses on aggregates, both combined with epifluorescence microscopy and CLSM, to quantify viruses on suspended particles.     

Experimental evolution of plant RNA viruses

Undoubtedly, viruses represent a major threat faced by human and veterinary medicines and by agronomy. The rapid evolution of viruses enables them to escape from natural immunities and from state-of-the-art antiviral treatments, with new viruses periodically emerging with deadly consequences. Viruses have also become powerful and are increasingly used tools in the field of experimental evolution. A growing body of evidence points that the evolution of viruses is mainly determined by key features such as their compacted genomes, enormous population sizes, and short generation times. In addition, RNA viruses also present large selection coefficients, antagonistic epistasis, and high mutation rates. Most of this knowledge comes from studies that have used either bacteriophages or animal viruses in cell cultures as experimental systems. However, plant viruses provide almost identical advantages for evolutionary studies and, in addition, offer an invaluable tool for studying the interplay between viruses and pluricellular hosts. Without seeking to be exhaustive, here we summarize some peculiarities of plant viruses and review recent experiments that have explored important questions on evolution, such as the role of deleterious mutation and neutrality, the effect of different transmission modes in the evolution of virulence, and the heterogeneous selective constraints imposed by multiple hosts.     

Influenza virus-specific cytotoxic T lymphocytes: a correlate of protection and a basis for vaccine development

Since influenza A viruses of the H5N1 subtype continue to circulate in wild and domestic birds and cause an ever increasing number of human cases, it is feared that H5N1 viruses may cause the next influenza pandemic. Therefore, there is considerable interest in the development of vaccines that confer protection against infections with these viruses or ideally, protection against influenza viruses of different subtypes. For the development of broad-protective vaccines the induction of virus-specific cytotoxic T lymphocytes (CTL) may be an important target, since it has been demonstrated that CTL contribute to protective immunity and are largely directed to epitopes shared by influenza viruses of various subtypes. In the present paper, the possibility to develop (cross-reactive) CTL-inducing vaccines is discussed.     

Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerases.

The sequences of 50 RNA-dependent RNA polymerases (RDRPs) from 43 positive strand and 7 double strand RNA (dsRNA) viruses have been compared. The alignment permitted calculation of distances among the 50 viruses and a resultant dendrogram based on every amino acid, rather than just those amino acids in the conserved motifs. Remarkably, a large subgroup of these viruses, including vertebrate, plant, and insect viruses, forms a single cluster whose only common characteristic is exploitation of insect hosts or vectors. This similarity may be due to molecular constraints associated with a present and/or past ability to infect insects and/or to common descent from insect viruses. If common descent is important, as it appears to be, all the positive strand RNA viruses of eucaryotes except for the picornaviruses may have evolved from an ancestral dsRNA virus. Viral RDRPs appear to be inherited as modules rather than as portions of single RNA segments, implying that RNA recombination has played an important role in their dissemination.     

New type platforms for in vitro vaccine assembly

Studying the structure of plant viruses and viral coat proteins along with the possibilities of their modification and structural remodeling is very important for the development of novel approaches to the design of biotechnological products, including those of medical use. Being nonpathogenic for mammals, in particular for humans, undoubtedly, make plant viruses advantageous for the development of new functional and biologically active materials, particularly, candidate vaccines. The present review focuses attention on characteristics and applying in biotechnology of spherical particles—the new type platforms generated by structural remodeling of plant viruses. Spherical particles do not have structural analogues among the icosahedral viruses and represent a new type of biogenic platforms. The assembly of the spherical particle–antigen immunogenic complexes in vitro bring in the possibilities of inexpensive and easy production of different vaccines.     

Characterization of target cells for MCF viruses in AKR mice

The recombinant (MCF) class of murine leukemia virus appears to play an important role in lymphomagenesis in AKR and other mice. Although much effort has been extended in characterizing MCF viruses, relatively little is known about the cells they infect. I examined what cells were targets in AKR mice for both lymphomagenic and nonlymphomagenic MCF viruses. Lymphomagenic MCF viruses of thymic origin (AKR-247 and C58L1) were found to infect and replicate selectively in immature lymphocytes only present in thymic cortex, whereas nonlymphomagenic MCF viruses of splenic origin (C58v-1-C77 and C58v-2-C45) selectively infected and replicated in cells that appeared to B lymphocytes. Virus-binding studies suggested that neither T- nor B-lymphocyte tropisms were determined by selective attachment of virus to the respective cells. These findings demonstrate that in contrast with ecotropic viruses, which can infect many types of cells in the mouse, specific cellular tropisms can exist for MCF viruses, and that MCF infection, and therefore oncogenicity, is closely linked to cellular differentiation.