Interaction between disturbance and primary productivity in determining stream invertebrate diversity

Invertebrate diversity patterns were examined in 10 streams that differed in substrate disturbance rates, in Taranaki, New Zealand, between April 1999 and January 2000. Two sites on each stream were sampled, one under native forest canopy where light was postulated to limit periphyton growth and a similar site 225–3800 m downstream in open grassland. Periphyton biomass was considerably higher at open stable sites than at closed or unstable sites. Associated with the higher algal biomass, species number and total abundance of animals were higher at open canopy sites. Species number exhibited a negative linear relationship with disturbance but only at open sites. In contrast, rarefied species richness exhibited a negative linear relationship with disturbance at both open and closed sites. This was a result of communities at the more disturbed sites being numerically dominated by only a few taxa compared to the more evenly distributed communities at stable sites. The observed patterns provide little support for contemporary diversity disturbance models but suggest diversity of invertebrates in streams is a function of time since the last disturbance, mediated through recovery of the food base in autotrophic streams.     

Interactive community responses to disturbance in streams: disturbance history moderates the influence of disturbance types

Both disturbance history and disturbance type act to structure communities through selecting for particular species traits but they may also interact. For example, flooding selects for species with flood‐resistant traits in streams, but those traits could make communities susceptible to other disturbances and so could cause shifts in community composition due to anthropogenic climate change. To better understand the interactive influences of disturbance history and type on community composition, we investigated the response of macroinvertebrate communities to disturbance using in‐stream channels. Using a split‐plot design, individual channels in five ‘stable’ streams and five ‘frequently disturbed’ streams (disturbance history) were subject to different disturbance type treatments (flooding, drying and a control). Disturbance type independently drove effects on species diversity, but all other effects of disturbance type depended on disturbance history. In particular, the interaction of disturbance type and history determined overall community response. Both disturbance types tested produced similar community responses in frequently disturbed streams, including changes in community composition and alterations to the abundance of less mobile taxa, but low‐flow had a significantly greater effect in stable streams. Macroinvertebrate drift was greatest in the rock‐rolling treatments and significantly less in the low‐flow treatment for both disturbance histories. Therefore, disturbance history moderated the effects of disturbance type and determined the mechanism of community response by determining how well species were adapted to disturbance. This outcome suggests that previous disturbances strongly influence how vulnerable communities are to changes in disturbance, and so should be considered when predicting how changes in disturbance regimes will affect future community composition.     

Impact of nutrient enrichment and alkalinization on periphyton communities in the New Jersey Pine Barrens

The impact of residential and agricultural development on stream periphyton communities in the New Jersey Pine Barrens was examined by comparison with communities in undeveloped areas. Watershed disturbance resulted in stream water primarily characterized by greatly elevated pH levels and nitrate concentrations. A total of 53 periphyton species were encountered in bimonthly samples over a one year period in the three disturbed and three undisturbed study streams. Species richness was significantly greater in the disturbed streams based on three criteria: the average number of species per stream on each sampling occasion (disturbed = 6.3; undisturbed = 4.9), the average number of species per stream for the entire year (disturbed = 19.3; undisturbed = 16.0), and the total number of species found in streams within a type (disturbed = 40; undisturbed = 31). Species composition also changed significantly as the result of disturbance. There appeared to be replacement of species characteristic of undisturbed Pine Barrens streams with species peripheral to the region. The expected effects of both elevated pH and nitrate were consistent with these results.     

茂县土地岭植被恢复过程中物种多样性动态特征

植被恢复是退化生态系统重建的重要途径,植被恢复过程物种多样性的变化反映了植被的恢复程度.通过群落调查和多样性分析,研究了岷江上游土地岭植被恢复过程中群落物种多样性特征.结果表明： 恢复过程中6类不同类型群落分别表现其对于不同环境特征、干扰及更新方式等的响应;森林是较灌丛更适合当地环境状况的植被类型;人工恢复无干扰和轻度干扰群落的多样性相对较高,是较好的恢复模式.重度干扰使得1年生植物与地下芽植物比例增加,其它口食性较好的多年生草本减少.较强的干扰是群落无法更新、长期处于灌丛阶段且多样性较低的重要原因.本地区人工恢复群落在更新进程和多样性维持上优于自然更新群落,种植华山松加速了本地区植被演替进程.建议以适合恢复区域的多种恢复配置方式进行造林,并避免较强干扰,可以加速群落演替进程并保持恢复群落较高的物种丰富度与多样性.     

Effects of disturbance frequency,intensity, and area on assemblages of stream macroinvertebrates

Disturbance frequency, intensity, and areal extent may influence the effects of disturbance on biological communities. Furthermore, these three factors may have interacting effects on biological diversity. We manipulated the frequency, intensity, and area of disturbance in a full-factorial design on artificial substrates and measured responses of benthic macroinvertebrates in a northern Vermont stream. Macroinvertebrate abundance was lower in all disturbance treatments than in the undisturbed control. As in most other studies in streams, species density (number of species/sample) was lower in disturbed treatments than in undisturbed controls. However, species density is very sensitive to total abundance of a sample, which is usually reduced by disturbance. We used a rarefaction method to compare species richness based on an equivalent number of individuals. In rarefied samples, species richness was higher in all eight disturbed treatments than in the undisturbed control, with significant increases in species richness for larger areas and greater intensities of disturbance. Increases in species richness in response to disturbance were consistent within patches, among patches with similar disturbance histories, and among patches with differing disturbance histories. These results provide some support for Huston’s dynamic-equilibrium model but do not support the intermediate-disturbance hypothesis. Our analyses demonstrate that species richness and species density can generate opposite patterns of community response to disturbance. The interplay of abundance, species richness, and species density has been neglected in previous tests of disturbance models. Received: 20 July 1999 / Accepted: 26 January 2000     

Small-scale patch dynamics after disturbance in litter ant communities

The dynamics of re-colonisation of disturbed patches may aid in the understanding of spatial variation of species richness. The present study experimentally tested the hypothesis that the variation of litter ant local species richness and composition is caused by the dynamics of re-colonisation after disturbances. We were particularly interested in whether the re-colonisation was by pre-existent species or species new to the patches, and whether the succession of species evidences the existence of dominance-controlled or founder-controlled communities. Litter patches of a forest remnant in Southeast Brazil were disturbed by removing most animals through litter drying, and litter samples were returned to the same sites from where they were removed. Ant species richness and composition were compared before and 2 months after the disturbance. Dissimilarity among disturbed and non-disturbed samples was compared to infer the succession model occurring after disturbance. Ant species richness did not recover after 2 months, and species composition of the disturbed samples showed more new colonisers than pre-existent species. Dissimilarity among samples in the disturbed plots was smaller than in the control plots, indicating a directional, or dominance-controlled, succession. The changes in species composition observed were caused by a decrease of some species, particularly predators, and an increase of species that are possibly opportunistic. Patches of litter are naturally disturbed in time and space, and evidence from the present paper indicates that succession occurring in these patches would lead to different species richness and compositions. Thus the dynamics of re-colonisation contributes to explaining the diversity of litter-dwelling ant communities at larger spatial and temporal scales. In each patch the succession seems to be directional, with opportunist species re-colonising preferentially empty plots. Therefore, these communities may attain a high diversity due to a small-scale patch dynamics model.     

The stream as a habitat templet for bryophytes: species' distributions along gradients in disturbance and substratum heterogeneity

1. The structure of bryophyte communities in streams in relation to habitat characteristics, especially disturbance, is described. Disturbance in rivers is quantified as movement of the stream bed, whereas in small streams water level fluctuation is used as an indicator of disturbance frequency. 2. Canonical correspondence analysis differentiated frequently disturbed sites from more stable ones. The existence of a disturbance gradient was confirmed in a subset of the study sites using long-term records of discharge variation. A parallel change was detected in the species composition of bryophyte communities with low-statured, potentially fast colonizers dominating the disturbed end and large perennial species the stable end of the gradient. 3. A consistent pattern of zonation of bryophyte species was found along the gradient from continually submersed to persistently dry conditions in small streams and lake outlets. An abrupt increase in species richness occurred at or just above the water line, where facultatively aquatic species tolerant of both conditions formed the bulk of the community. 4. The relationship between species richness and standing crop in stream bryophyte communities was consistent with the hump-backed model of Grime (1979), especially at the within-habitat scale. Quadrats of low and very high standing crop were characterized by low species richness, while peak richness was observed at intermediate standing crops. 5. A few perennial species (e.g. Fontinalis spp. and Rhynchostegium riparioides) capable of monopolizing space dominated the most stable habitats. Species composition in low biomass sites was more variable, yet only one basic growth-form (small-statured species with high allocation to spore production) seemed possible in these highly disturbed streams. In habitats of intermediate biomass, small-scale disturbances apparently allow the formation of a more varied bryophyte community. 6. A habitat templet for stream bryophyte life strategies and community structure is presented. Disturbance is proposed to be the factor filtering out traits unsuitable for a given environment. The potential of stream bryophytes for testing and developing general ecological theory is emphasized.     

Recolonization by benthic invertebrates after experimental disturbance in a Swiss prealpine river

1. Although the crucial point of disturbance experiments in streams is the extent to which they can simulate an actual spate, this aspect has been widely neglected in the design of such studies. Similarly, the influence of the specific hydrological disturbance regime of a stream on its benthic community has received much theoretical attention in recent years, but hypotheses have rarely been tested in the field. 2. Our field experiment compared the structure of the benthic invertebrate community in the prealpine River Necker in north-eastern Switzerland with predictions of the patch dynamics concept about the faunal composition of frequently disturbed streams. We also compared the resistance and resilience of the invertebrates between two sites in the River Necker. A similar substratum composition at both sites, but higher shear stress values both at baseflow and bankfull discharge at site 2, implied a higher disturbance frequency at the latter site. Five patches of stream bed of ≈ 9 m² were disturbed by kicking and raking at each site, while five similar areas served as controls. From each plot, six Surber samples were taken: the first immediately after the disturbance, and the following five 1, 3, 6, 10 and 30 days later. 3. Resilience of the total benthic invertebrate fauna was high. The total number of individuals recovered to undisturbed densities within 30 days at site 1 and 6 days at site 2. Taxon richness recovered within 3 days. In accordance with theory, taxa with high recolonization rates made up a major percentage of the total number of individuals, especially in disturbed plots. However, this percentage was lower at site 2 in spite of the higher disturbance frequency at this site. Rhithrogena spp., Leuctra spp. and the Simuliidae recovered faster to undisturbed densities at site 2. In contrast, absolute recolonization rates of these taxa were higher at site 1, where total invertebrate densities were more than twice as high as at site 2. 4. Our results suggest that the time since the last disturbance should be considered as an important factor in studies of benthic invertebrate communities in prealpine rivers, because disturbances can alter the community structure. In frequently disturbed streams, very short sampling intervals may be needed to detect differences in taxon-specific colonization rates. The specific hydrological disturbance regime of such streams is also important, because even within-stream differences in the resilience of the benthic invertebrate community are possible.     

Resistance and Resilience of Macroinvertebrate Assemblages to Drying and Flood in a Tallgrass Prairie Stream System

Intermittent streams are common worldwide, and the ability of invertebrates to recover from floods and drought is a key feature of communities from these highly disturbed ecosystems. The macroinvertebrate assemblages of Kings Creek in northeastern Kansas were sampled regularly from four intermittent and two perennial sites over 2 years (1995–1996) to investigate the response and recovery to seasonal drying and floods. A 9mo drying period reduced taxa richness and density to 14% and 3% of pre-drying assemblages, respectively, in 1995–1996, whereas a 2mo drying period reduced richness by half and density to 4% of pre-drying assemblages in 1996. Floods at intermittent sites reduced densities and richness by 95% and 50%, respectively. A >50 y-flood reduced macroinvertebrate richness by 97% and density by >99% at a downstream perennial site. Resistance and resilience of total macroinvertebrate density was typically greater to floods than to drying, whereas resilience of taxa richness did not differ between disturbance types. The time required for recovery to pre-flood conditions (richness and density) was half as long (27 vs. 76 day) for intermittent sites compared to perennial sites. Colonization of intermittent sites was a function of distance from upstream refugia. Floods were a more important disturbance on assemblages in a downstream reach as compared to upstream reaches. In contrast, upstream reaches were more likely to dry. Recovery following flood and drought was dominated by colonization as opposed to tolerance, thus resilience is more important than resistance in regulating macroinvertebrate communities in these streams, and relative position in the landscape affects disturbance type, intensity, and ability of communities to recover from disturbance.     

Effects of habitat change and geographical variation on the bird communities of two Indonesian islands

The effects of selective logging and other types of forest exploitation on bird communities are often studied latitudinally, i.e. a contemporaneous comparison of disturbed and pristine areas. Such an approach assumes that before disturbance those areas were equivalent. By comparing communities at a single site before and after disturbance, a so called longitudinal approach does not make that assumption but such studies can be resource intensive. In this study we adopt a latitudinal approach to explore the effects of disturbance on birds, but pay specific attention to whether natural geographically-based variation in the forest ecosystem may be a major contributory factor equal to, or greater than, effects of disturbance. Bird census data were collected from two Indonesian islands, Sumba and Buru. On Sumba the differences between habitat types in terms of species richness, species accumulation rates, and numbers of birds were swamped by simple site differences between the forest blocks sampled. On Buru, disturbed areas were more diverse than mature forest but it was still not possible to discount the effects of natural variation between forest areas. Although the islands support bird faunas which are rather similar in size and origin, local species diversities and abundances were significantly greater on Sumba. Substituting space for time is a common strategy in ecological research but the results of such studies should be viewed with caution.     

The effect of patch disturbance on stream invertebrate community structure: the influence of disturbance history

The effect of disturbance history on the recovery of benthic invertebrate communities following disturbance was investigated in four streams in the Southern Alps of New Zealand. Two of the streams had a history of fluctuating discharge and temperature while the others did not. Recovery from disturbance was tested experimentally using baskets of cobbles, a third of which were disturbed every week for 9 weeks, a further third every 3 weeks and the final third left undisturbed. Algal biiomass, number of invertebrate taxa and total number of invertebrates all declined in baskets disturbed more frequently. Although the relative abundance of some taxa declined with time since the last disturbance, no taxa showed a significant decline in absolute abundance. However, several taxa showed marked increases in relative abundance in the less disturbed treatments particularly at the more stable sites. In contrast to the predictions of ecological theory, numbers of taxa and total invertebrates appeared to recover more quickly in the more complex communities at the stable sites. However, if these communities are considered to represent only stable communities, they do support the view that more complex communities will be more resilient. Community structure at the stable sites was also more similar between baskets in the undisturbed treatment than at the unstable sites, suggesting communities had reached a constant state more quickly. The more rapid recovery of communities measured at the stable sites may have been a consequence of experimental scale; disturbed patches were only 0.045 m² in area and the higher densities of invertebrates at the stable sites meant a larger pool of colonists was available following each experimental disturbance. Nevertheless, ideas of stability in ecological theory and the scale of most spate events suggest this is the appropriate scale for examining community recovery. Furthermore, the larger pool of available colonists could not explain all the differences in community response, as patterns of change in community structure at the stable sites differed considerably more from those expected by purely random colonisation processes than at the unstable sites.     

Effects of temporal variability of disturbance on the succession in marine fouling communities in northern-central Chile

We investigated the effects of temporal variability in a disturbance regime on fouling communities at two study sites in a northern-central Chilean bay. Fouling assemblages grown on artificial settlement substrata were disturbed by mechanical removal of biomass at different time intervals. Using one single disturbance frequency (10 disturbance events over 5 months) we applied 7 different temporal disturbance treatments: a constant disturbance regime (identical intervals between disturbance events), and 6 variable treatments where both variableness and sequences of intervals between disturbance events were manipulated. Two levels of temporal variableness (low and high, i.e. disturbance events were either dispersed or highly clumped in time) in the disturbance regime were applied by modifying the time intervals between subsequent disturbance events. To investigate the temporal coupling between disturbance events and other ecological processes (e.g. larval supply and recruitment intensity), three different sequences of disturbance intervals were nested in each of the two levels of temporal variableness. Species richness, evenness, total abundance, and structure of communities that experienced the various disturbance regimes were compared at the end of the experiment (15 days after the last disturbance event). Disturbance strongly influenced the community structure and led to a decrease in evenness and total abundance but not species richness. In undisturbed reference communities, the dominant competitor Pyura chilensis (Tunicata) occupied most available space while this species was suppressed in all disturbed treatments. Surprisingly, neither temporal variableness in the disturbance regime nor the sequence of intervals between disturbance events had an effect on community structure. Temporal variability in high disturbance regimes may be of minor importance for fouling communities, because they are dominated by opportunistic species that are adapted to rapidly exploit available space.     

Long-term recovery of a mountain stream from clear-cut logging: the effects of forest succession on benthic invertebrate community structure

1. Changes in benthic invertebrate community structure following 16 years of forest succession after logging were examined by estimating benthic invertebrate abundance, biomass and secondary production in streams draining a forested reference and a recovering clear-cut catchment. Benthic invertebrate abundance was three times higher, and invertebrate biomass and production were two times higher in the disturbed stream.
2. Comparison of invertebrate community abundance 1, 5 and 16 years after clear-cutting indicated that the proportion of scrapers had decreased, whereas shredders had increased. Functional group percentage similarity indicated that the invertebrate community in the disturbed stream 16 years after clear-cutting was more similar to the reference than to that found earlier in the disturbed stream.
3. The five indices calculated from data collected over the past 16 years, as well as the abundance, biomass and production data collected during this study, proved to be of differing value in assessing recovery of the disturbed stream from logging. Percent dominant taxon and EPT (Ephemeroptera, Plecoptera and Trichoptera) taxon richness failed to show any initial differences between reference and disturbed streams, indicating that these indices may not be useful for measuring recovery from logging. The percentage Baetis and shredder–scraper indices showed significant differences only during the 1977 study and suggest recovery (no difference between reference and disturbed) by 1982. The North Carolina Biotic Index showed continued differences during 1982 in the riffle and depositional habitats and recovery by 1993. Total macroinvertebrate abundance, biomass and production, as well as EPT abundance, indicated continued differences between the reference and disturbed streams in the 1993 study.     

Biodiversity loss in Appalachian headwater streams (Kentucky,USA): Plecoptera and Trichoptera communities

Government and academic studies indicate that many streams in the Appalachian Mountains have degraded biological communities stemming from a variety of regional landuses. Headwater stonefly (Plecoptera) and caddisfly (Trichoptera) assemblages were assessed between 1999 and 2004 in relation to pervasive landuse disturbances (coal mining and residential) in mountainous areas of eastern Kentucky, USA. Indicator metrics (richness, abundance, tolerance, and an observed/expected (O/E) null model) were compared among 94 sites with different land use pressures including least disturbed reference, residential, mining, and mixed mining and residential categories. Thirty-three stonefly species from 26 genera and 9 families were identified; Leuctra, Acroneuria, Haploperla, and Isoperla comprised the core genera that commonly decreased with disturbance. Caddisflies were represented by 48 species, 32 genera, and 14 families. Core caddisfly genera (Neophylax, Pycnopsyche, Rhyacophila, Lepidostoma, and Wormaldia) were extirpated from most disturbed sites. Species richness was significantly higher at reference sites and reference site mean tolerance value was lowest compared to all other categories; relative abundance of both orders was variable between disturbance groups. Non-metric multidimensional scaling (for riffle-dwelling stonefly and caddisfly genera) clustered reference sites distinctly from most other sites. The O/E index was highly correlated with individual habitat and chemical stressors (pH, conductivity) and on average, it estimated ~ 70% loss of common stoneflies and caddisflies across all disturbed landuse categories. Expected plecopteran and trichopteran communities were radically altered in streams draining mining and residential disturbance. Long-term impacts incurred by both landuses will continue to depress these vulnerable indigenous fauna.     

Temporal variability in fish assemblages from disturbed and undisturbed streams

Fish assemblages were sampled by electrofishingover a two- to ten-year period in undisturbedand anthropogenically disturbed South Carolinacoastal plain streams. Jaccard similarity,Bray–Curtis similarity, and Spearman rankcorrelations among samples collected from thesame sites over time were significantly greaterat undisturbed sites than at disturbed sites,suggesting greater fish assemblage persistenceand stability at the undisturbed sites. TheIndex of Biotic Integrity (IBI) also exhibitedsignificantly less variation over time atundisturbed sites than at disturbed sites.Physical habitat structure changed more overtime at disturbed sites than at undisturbedsites, and this variability was directlyrelated to temporal variability in fishassemblage structure. Comparisons betweenmultiple and single pass electrofishing samplessuggested that only a small proportion of thetemporal variability observed at the studysites was caused by inefficient sampling.Assessment of temporal variation in fishassemblage structure can serve as an indicatorof environmental disturbance and facilitate thedistinction of substantive ecological changefrom normal background variation.     

Temporal effects of disturbance on community composition in simulated stage‐structured plant communities

In an era of global environmental change, understanding how disturbance affects the dynamics of ecological communities is crucial. However, few studies have theoretically explored the potential influence of disturbance including both intensity and frequency on compositional change over time in communities with stage structure. A spatially explicit, individual‐based model was constructed incorporating the various demographic responses to disturbance of plants at two different growth stages: seedlings and adults. In the model, we assumed that individuals within each stage were demographically equivalent (neutral) but differed between stages. We simulated a common phenomenon that seedlings suffered more from disturbance such as grazing and fire than adults. We showed how stage‐structured communities of seedlings and adults responded to disturbance with various levels of disturbance frequency and intensity. In “undisturbed” simulations, the relationship between average species abundance (defined here as the total number of individuals divided by species richness) and community composition turnover (measured by the Bray–Curtis similarity index) was asymptotic. However, in strongly “disturbed” simulations with the between‐disturbance intervals greater than one, this relationship became unimodal. Stage‐dependent response to disturbance underlay the above discrepancy between undisturbed and disturbed communities.     

Quantifying the direct and indirect effects of flow‐related disturbance on stream fish assemblages

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Acridids as indicators of disturbance in dry deciduous forest of West Bengal in India

Acridid communities are sensitive to anthropogenic disturbance and the community structure of acridids plays vital role in functioning the forest ecosystem. They are potentially useful bioindicators for conservation planning and habitat disturbances. Acridid assemblages of three different habitat types based on degree of disturbance as follows five natural sites, five moderately disturbed sites and five highly disturbed sites in Chaupahari forest, West Bengal, India were studied. Diversity, abundance, equitability and species richness of acridid were observed in respect to undisturbed and disturbed habitats. The species richness and diversity of the sites tracked the intensity of disturbance, the greatest value being associated with the natural site followed by the moderately disturbed site and highly disturbed site. The highest species richness and diversity index indicate the suitable habitat for acridid population. Statistical analysis infers that different species show different behavior and the sites are also different in relation to different habitat types.     

Individual and combined effects of fish predation and bed disturbance on stream benthic communities: a streamside channel experiment

1. The composition and spatiotemporal dynamics of biological communities are influenced by biotic processes, such as predation and competition, but also by physical disturbances, such as floods in running waters. However, the interplay of disturbance with predation is still poorly understood, especially in frequently disturbed streams. Further, different predator species can affect prey communities in different ways depending on their feeding mode and efficiency. 2. We investigated the individual and combined effects of flood‐induced bed disturbance and fish predation on the benthos for 4 weeks in 18 streamside channels fed by a flood‐prone New Zealand river. Bed movements caused by floods were simulated by tumbling the substratum in half the channels. Six channels each were stocked with introduced brown trout (Salmo trutta) or native upland bully (Gobiomorphus breviceps) or had fish excluded. We studied algal biomass and both invertebrate density and daytime activity on surface stones on several dates after the disturbance, invertebrate community composition in the substrata of the entire channels on day 28 and leaf decomposition rates over the 28‐day period. 3. Disturbance affected algal biomass and density, richness and activity of surface stone invertebrates, and overall density and richness of channel invertebrates. Presence or absence of fish, by contrast, did not influence overall invertebrate standing stocks when subsurface substrata were included but did affect invertebrate densities on surface stones in 45% of all analysed cases and invertebrate activity on surface stones in all cases. Leaf decomposition rates were not influenced at all by the experimental manipulations. 4. Native upland bullies featured more often than exotic brown trout in causing invertebrate density changes and equally often in causing changes to grazer behaviour. Overall, our results imply that fish predation can have strong effects on the benthic invertebrate community in frequently disturbed streams, especially via behavioural changes.     

THE POTENTIAL INDICATOR VALUE OF RARE TAXA RICHNESS IN DIATOM‐BASED STREAM BIOASSESSMENT1

Despite their recognized contribution to species richness, the importance of rare taxa richness in bioassessment is unclear. This study aimed to characterize the environmental factors affecting the number of rare diatom taxa in western U.S. streams and rivers, and to evaluate whether this number can be used to differentiate streams with contrasting human disturbance. Three different categories of rare taxa were used: satellite (taxa with low occurrence and low abundance), rural (taxa with high occurrence and low abundance), and urban (taxa with low occurrence and high abundance). Common taxa were included as a separate category of core taxa (taxa with high occurrence and high abundance). We analyzed 987 diatom samples collected over the period of 5 years (2000–2004) for the U.S. Environmental Protection Agency’s (EPA) Western Environmental Monitoring and Assessment Program (WEMAP). The results showed that rural taxa richness (number of rural taxa per site) increased along a longitudinal gradient from mountainous, fast‐flowing oligotrophic streams with fewer fine substrates to large, slow‐moving, nutrient‐rich rivers with abundance of fine substrates. Rural taxa richness was the only rarity metric that distinguished least disturbed (reference) sites from the most disturbed (impacted) sites, but it was significantly different only in the mountains ecoregion. Core taxa richness distinguished reference from impacted sites in the West and in each one of the three ecoregions (mountains, plains, and xeric). Our findings revealed that rural taxa richness can be used as an indicator of human disturbance in streams/rivers, especially in the mountains ecoregion, and that rarity definition is important in bioassessment.