The decoupling of abundance and species richness in lizard communities

1. Patterns of species richness often correlate strongly with measures of energy. The more individuals hypothesis (MIH) proposes that this relationship is facilitated by greater resources supporting larger populations, which are less likely to become extinct. Hence, the MIH predicts that community abundance and species richness will be positively related. 2. Recently, Buckley & Jetz (2010, Journal of Animal Ecology, 79, 358-365) documented a decoupling of community abundance and species richness in lizard communities in south-west United States, such that richer communities did not contain more individuals. They predicted, as a consequence of the mechanisms driving the decoupling, a more even distribution of species abundances in species-rich communities, evidenced by a positive relationship between species evenness and species richness. 3. We found a similar decoupling of the relationship between abundance and species richness for lizard communities in semi-arid south-eastern Australia. However, we note that a positive relationship between evenness and richness is expected because of the nature of the indices used. We illustrate this mathematically and empirically using data from both sets of lizard communities. When we used a measure of evenness, which is robust to species richness, there was no relationship between evenness and richness in either data set. 4. For lizard communities in both Australia and the United States, species dominance decreased as species richness increased. Further, with the iterative removal of the first, second and third most dominant species from each community, the relationship between abundance and species richness became increasingly more positive. 5. Our data support the contention that species richness in lizard communities is not directly related to the number of individuals an environment can support. We propose an alternative hypothesis regarding how the decoupling of abundance and richness is accommodated; namely, an inverse relationship between species dominance and species richness, possibly because of ecological release.     

Comparative phylogeography of three endemic rodents from the Albertine Rift, east central Africa

The major aim of this study was to compare the phylogeographic patterns of codistributed rodents from the fragmented montane rainforests of the Albertine Rift region of east central Africa. We sampled individuals of three endemic rodent species, Hylomyscus denniae, Hybomys lunaris and Lophuromys woosnami from four localities in the Albertine Rift. We analysed mitochondrial DNA sequence variation from fragments of the cytochrome b and control region genes and found significant phylogeographic structuring for the three taxa examined. The recovered phylogenies suggest that climatic fluctuations and volcanic activity of the Virunga Volcanoes chain have caused the fragmentation of rainforest habitat during the past 2 million years. This fragmentation has played a major role in the diversification of the montane endemic rodents of the region. Estimation of the divergence times within each species suggests a separation of the major clades occurring during the mid to late Pleistocene.     

Mammal density and patterns of ectoparasite species richness and abundance

Patterns of species richness, prevalence and abundance of ectoparasites have rarely been investigated at both the levels of populations and species of hosts. Here, we investigated the effects in changes in small mammal density on species richness, abundance and prevalence of ectoparasitic fleas. The comparative analyses were conducted for different small mammal species and among several populations during a long-term survey. We tested the hypothesis that an increase in host density should be linked with an increase in parasite species richness both among host species and among populations within host species, as predicted by epidemiological models. We also used host species density data from literature. We found that host density has a major influence on the species richness of ectoparasite communities of small mammals among host populations. We found no relationship between data of host density from the literature and parasite species richness. In contrast with epidemiological hypotheses, we found no relationships between abundance, or prevalence, and host density, either among host species or among host populations. Moreover, a decrease in abundance of fleas in relation with an increase in host density was observed for two mammal species (Apodemus agrarius and A. flavicollis). The decrease or the lack of increase in flea abundance in relation with an increase in host density suggests anti-parasitic behavioural activities such as grooming.     

Habitat selection determines abundance, richness and species composition of beetles in aquatic communities

Distribution and abundance patterns at the community and metacommunity scale can result from two distinct mechanisms. Random dispersal followed by non-random, site-specific mortality (species sorting) is the dominant paradigm in community ecology, while habitat selection provides an alternative, largely unexplored, mechanism with different demographic consequences. Rather than differential mortality, habitat selection involves redistribution of individuals among habitat patches based on perceived rather than realized fitness, with perceptions driven by past selection. In particular, habitat preferences based on species composition can create distinct patterns of positive and negative covariance among species, generating more complex linkages among communities than with random dispersal models. In our experiments, the mere presence of predatory fishes, in the absence of any mortality, reduced abundance and species richness of aquatic beetles by up to 80% in comparison with the results from fishless controls. Beetle species' shared habitat preferences generated distinct patterns of species richness, species composition and total abundance, matching large-scale field patterns previously ascribed to random dispersal and differential mortality. Our results indicate that landscape-level patterns of distribution and species diversity can be driven to a large extent by habitat selection behaviour, a critical, but largely overlooked, mechanism of community and metacommunity assembly.     

Assessing the accuracy of species distribution models to predict amphibian species richness patterns

1. Evaluating the distribution of species richness where biodiversity is high but has been insufficiently sampled is not an easy task. Species distribution modelling has become a useful approach for predicting their ranges, based on the relationships between species records and environmental variables. Overlapping predictions of individual distributions could be a useful strategy for obtaining estimates of species richness and composition in a region, but these estimates should be evaluated using a proper validation process, which compares the predicted richness values and composition with accurate data from independent sources. 2. In this study, we propose a simple approach to estimate model performance for several distributional predictions generated simultaneously. This approach is particularly suitable when species distribution modelling techniques that require only presence data are used. 3. The individual distributions for the 370 known amphibian species of Mexico were predicted using maxent to model data on their known presence (66,113 presence-only records). Distributions were subsequently overlapped to obtain a prediction of species richness. Accuracy was assessed by comparing the overall species richness values predicted for the region with observed and predicted values from 118 well-surveyed sites, each with an area of c. 100 km(2), which were identified using species accumulation curves and nonparametric estimators. 4. The derived models revealed a remarkable heterogeneity of species richness across the country, provided information about species composition per site and allowed us to obtain a measure of the spatial distribution of prediction errors. Examining the magnitude and location of model inaccuracies, as well as separately assessing errors of both commission and omission, highlights the inaccuracy of the predictions of species distribution models and the need to provide measures of uncertainty along with the model results. 5. The combination of a species distribution modelling method like maxent and species richness estimators offers a useful tool for identifying when the overall pattern provided by all model predictions might be representing the geographical patterns of species richness and composition, regardless of the particular quality or accuracy of the predictions for each individual species.     

Environmental correlates of vegetation patterns and species richness in the northern Grampians,Victoria

Abstract Plant species cover-abundance and density data were collected for 94 sample plots across a gradient from rocky uplands to sandy outwash plains in the northern part of Grampians (Gariwerd) National Park in western Victoria. Detrended correspondence analysis (DCA) was used to identify dominant gradients in species composition. A range of static (e.g. substrate type, soil depth, microclimate indicators) and dynamic (e.g. elapsed time since last fire) environmental variables were measured. Correlations were sought between these variables and vegetation patterns including those for richness (R) and Shannon-Weiner diversity (H′). The dominant gradient of vegetation change identified by DCA separated rocky sites and sites near ephemeral streams, from well-drained, sandy sites. Secondary gradients identified time since last fire as important for sandy sites, and altitude and aspect-related microclimate for rocky sites. Diversity was highest in the first 2 years after fire but showed no further decline in older sites. Overall, R and H' were negatively correlated with soil nutrient concentrations. On sandy sites R was high, but was low on rocky sites and near streams. Within the rocky sites, R was highest on cool, moist south and east slopes, and lowest on hot, dry north and west slopes. Explanations of diversity patterns based on inhibition of competitive exclusion due to stress and recurrent disturbance best fit the results presented here.     

Predicting patterns of plant species richness in megadiverse South Africa

Using new tools (boosted regression trees) in predictive biogeography, with extensive spatial 23 distribution data for >19 000 species, we developed predictive models for South African plant species richness patterns. Further, biome level analysis explored possible functional determinants of country‐wide regional species richness. Finally, to test model reliability independently, we predicted potential alien invasive plant species richness with an independent dataset. Amongst the different hypotheses generally invoked to explain species 30 diversity (energy, favorableness, topographic heterogeneity, irregularity and seasonality), results revealed topographic heterogeneity as the most powerful single explanatory variable for indigenous South African plant species richness. Some biome‐specific responses were observed, i.e. two of the five analyzed biomes (Fynbos and Grassland) had richness best explained by the “species‐favorableness” hypothesis, but even in this case, topographic heterogeneity was also a primary predictor. This analysis, the largest conducted on an almost exhaustive species sample in a species‐rich region, demonstrates the preeminence of topographic heterogeneity in shaping the spatial pattern of regional plant species richness. Model reliability was confirmed by the considerable predictive power for alien invasive species richness. It thus appears that topographic heterogeneity controls species richness in two main ways: firstly, by providing an abundance of ecological niches in contemporary space (revealed by alien invasive species richness relationships) and secondly, by facilitating the persistence of ecological niches through time. The extraordinary richness of the South African Fynbos biome, a world‐renowned hotspot of biodiversity with the steepest environmental gradients in South Africa, may thus have arisen through both mechanisms. Comparisons with similar regions of the world outside South Africa are needed to confirm the generality of topographic heterogeneity and favorableness as predictors of plant richness.     

中国蛇类物种丰富度地理格局及其与生态因子的关系

物种丰富度地理格局成因是生态学和生物地理学研究重要目标之一。生态假说在解释物种丰富度地理格局的成因上受到广泛关注。该文基于100km×100km空间分辨率研究中国蛇类物种丰富度的地理分布格局,并结合生态假说探讨影响蛇类分布格局的因素。该研究采用主轴邻距法获得基于特征值的空域数据,并同生态因子进行多元回归分析,结果表明:(1)中国蛇类物种丰富度在经、纬度上呈现多峰分布格局,物种丰富度最高的地区位于东洋界亚热带、热带,丰富度较低的地区位于青藏高原、北方草原荒漠、黄淮平原、两湖平原及鄱阳湖平原等;(2)多元回归分析能解释56.5%的蛇类物种丰富度变化,分析得出蛇类物种丰富度格局的主要影响因子是归一化植被指数、最冷季降水量和年温差。(3)模型选择结果显示,在多元回归分析中,P<0.05的变量(归一化植被指数、最冷季降水量和年温差)组成的模型是解释蛇类物种丰富度格局的最优模型。这说明蛇类物种丰富度格局是由不同生态因子共同作用的结果。基于中国蛇类物种丰富度地理格局成因研究的复杂性,该文提出在进一步研究中,需重视各假说中影响因子的选择和人类活动的影响,并在不同空间尺度上对蛇类物种丰富度地理格局进行综合分析。     

Stability and species richness in complex communities

Using both numerical simulations and analytical methods, we investigate how the stability of ecological communities depends on the number of species they contain. To investigate complex communities, we construct communities from modular subcommunities that can have arbitrary community structure; e.g. subcommunities could consist of pairs of predator and prey species, trios of prey, specialist predator and generalist predator, or any collection of interacting species. By building entire communities from subcommunities, we can change the number of species in the community without changing community structure. We further suppose that species sharing the same ecological role in different subcommunities act additively on the per capita population growth rates of other species. Under these assumptions, the inter-actions between species from different subcommunities have no effect on community-level stability, measured by the variability in the combined densities of species sharing the same ecological role in different subcommunities. Furthermore, increasing species richness (i.e. the number of subcommunities comprising the community) increases community-level stability only when it introduces species that respond differently to environmental fluctuations. Therefore, our results support the insurance hypothesis that species richness increases community-level stability by insuring that some species in a community are tolerant of different environmental fluctuations.     

Effects of experimental multi-season drought on abundance,richness, and beta diversity patterns in perennially flowing stream insect communities

Hydrobiologia - Freshwater systems are projected to experience increased hydrologic extremes under climate change. To determine how small streams may be impacted by shifts in flow regimes, we...     

Three-dimensional mid-domain predictions: geometric constraints in North American amphibian, bird, mammal and tree species richness patterns

The "mid-domain effect" (MDE) has received much attention as a candidate explanation for patterns in species richness over large geographic areas. Mid-domain models generate a central peak in richness when species ranges are placed randomly within a bounded geographic area (i.e. the domain). Until now, domain limits have been described mostly in one-dimension, usually latitude or elevation, and only occasionally in two-dimensions. Here we test 1-D, 2-D and, for the first time, 3-D mid-domain models and assess the effects of geometric constraints on species richness in North American amphibian, bird, mammal and tree species. Using spatially lagged simultaneous autoregressive models, empirical richness was predicted quite well by the mid-domain predictions and the spatial autoregressive term (45–92% R²). However, our results show that empirical species richness peaks do deviate from those of the MDE predictions in 3 dimensions. Variation explained (R²) by MDE predictions generally increased with increasing mean range size of the different biotic groups (from amphibian, to tree, mammal and finally bird data), and decreased with increasing dimensions being accounted for in the models. The results suggest geometric constraints alone can explain much of the variation in species richness with elevation, specifically with respect to the larger-range taxa, birds and mammals. Our analysis addresses many of the recent methodological criticisms directed at studies testing the MDE, and our results support the hypothesis that species diversity patterns are influenced by geometric constraints.     

Plant communities,species richness and their environmental correlates in the sandy heaths of Little Desert National Park,Victoria

Plant community composition and its likely environmental controls were investigated for 200 sample plots (each 100 m²) from Mediterranean-type vegetation in the Little Desert National Park, Victoria. TWINSPAN classification revealed four readily identifiable vegetation types; mallee-broombush, heathland, stringybark open woodland, and an assemblage intermediate between mallee-broombush and heathland referred to here as broom-heath. Mallee-broombush was found on Parilla Sands characterized by high Ca levels relative to heathland and stringybark open woodlands on unconsolidated Lowan Sands. The first axis of a 2 dimensional non-metric MDS ordination also divided heathlands (high axis scores) from mallee-broombush (low scores), while the second separated these vegetation types from stringybark woodlands and broom-heath. Vector-fitting revealed significant correlations between the locations of samples in ordination space and exchangeable soil Ca, soil colour, aspect and Shannon–Weiner diversity. Highest species richness/diversity was associated with the ecotonal area between Parilla and Lowan Sands (i.e. broom-heath) where a number of species characteristic of different assemblages had overlapping ranges. The fire-sensitive conifer, Callitris rhomboidea, was preferentially located in stringybark woodland and broom-heath vegetation types. Its presence was positively associated with high species richness and aspects having a southerly component. Four Callitris stands sampled for population structure were all > 40 years old and showed evidence of interfire recruitment from seeds released by old, serotinous cones. Overall, results suggest that variations in plant community composition and structure in the eastern block of the Little Desert are primarily due to variations in soil properties associated with the distribution of the two dominant substrate types, Parilla Sand and Lowan Sand. However, the interplay of topography and fire behaviour has probably been more important than substrate type in determining the distribution and population structure of longer-lived, fire-sensitive species such as Callitris rhomboidea.     

Correlates of species richness in the largest Neotropical amphibian radiation

Although tropical environments are often considered biodiversity hotspots, it is precisely in such environments where least is known about the factors that drive species richness. Here, we use phylogenetic comparative analyses to study correlates of species richness for the largest Neotropical amphibian radiation: New World direct-developing frogs. Clade-age and species richness were nonsignificantly, negatively correlated, suggesting that clade age alone does not explain among-clade variation in species richness. A combination of ecological and morphological traits explained 65% of the variance in species richness. A more vascularized ventral skin, the ability to colonize high-altitude ranges, encompassing a large variety of vegetation types, correlated significantly with species richness, whereas larger body size was marginally correlated with species richness. Hence, whereas high-altitude ranges play a role in shaping clade diversity in the Neotropics, intrinsic factors, such as skin structures and possibly body size, might ultimately determine which clades are more speciose than others.     

Environmental determinants of amphibian and reptile species richness in China

Understanding the factors that regulate geographical variation in species richness has been one of the fundamental questions in ecology for decades, but our knowledge of the cause of geographical variation in species richness remains poor. This is particularly true for herpetofaunas (including amphibians and reptiles). Here, using correlation and regression analyses, we examine the relationship of herpetofaunal species richness in 245 localities across China with 30 environmental factors, which include nearly all major environmental factors that are considered to explain broad-scale species richness gradients in such theories as ambient energy, water–energy dynamics, productivity, habitat heterogeneity, and climatic stability. We found that the species richness of amphibians and reptiles is moderately to strongly correlated with most of the environmental variables examined, and that the best fit models, which include explanatory variables of temperature, precipitation, net primary productivity, minimum elevation, and range in elevation, explain ca 70% the variance in species richness for both amphibians and reptiles after accounting for sample area. Although water and temperature are important explanatory variables to both amphibians and reptiles, water variables explain more variance in amphibian species richness than in reptile species richness whereas temperature variables explain more variance in reptile species richness than in amphibian species richness, which is consistent with different physiological requirements of the two groups of organisms.     

Riparian bryophyte communities on Madeira: patterns and determinants of species richness and composition

Abstract

We studied 16 streams evenly distributed over the northern and southern slopes of Madeira in order to investigate the riparian bryoflora. Within each stream, three positions (upper, middle and lower reaches) were delimited and within each position two areas were selected. Within each area two plots (each composed of six microplots of 0.2 m²) were sampled, one in the within-stream habitat (submerged all year round), and the other in the stream-border habitat (submerged only in winter). We found that species composition of the riparian bryophytes is affected by the habitat and position in the stream, but not by the main aspect (northern versus southern slope). Concerning species richness, we found that the stream-border community was clearly richer than the within-stream community, upstream plots were richer than plots downstream, and plots on the northern slope of the island were richer than plots on the southern slope. Habitat type was the most significant factor in determining the richness of the threatened species with more species present in the stream-border habitat. Additive partitioning showed that the between-stream component contributed most to total species richness, especially to the richness of the infrequent and threatened species. However, for the common species, the lowest level, i.e. the within-area component, was the most important. Although northern upstream areas are climatically favourable for many bryophyte species due to their higher humidity, the clear effects found may not only be climate-induced, as these areas are also less disturbed and mostly covered by the natural laurel forest. In the southern, downstream parts only a few species were present. Human impacts are largest in the latter situations and probably contributed to the low species richness. As the streams differed considerably in terms of their bryophyte flora, and most of the species were rare, changes in the riparian areas can greatly affect the bryoflora. Therefore, in order to protect the riparian bryophytes as comprehensively as possible, we emphasize the need for careful monitoring of any changes.     

Country-based patterns of total species richness,endemicity, and threatened species richness in African rodents and insectivores

Country-based patterns of total species richness, endemicity, and threatened species richness in African rodents and insectivores are studied in this paper. We found several patterns which were similar between insectivores and rodents. Indeed, in both groups we observed: (i) a significantly uneven distribution of species richness across countries and geographic regions with highest species richness peaks being in Middle Africa and lowest peaks in Northern Africa, (ii) species richness increasing with rainfall but being independent on a country’s surface area, (iii) in each country, the insectivore total species richness and endemic species richness increases were positively correlated with rodent total species richness and endemic species richness increases. However, number of endemics peaked in South Africa and D.R. Congo in both groups, but also in Tanzania for Insectivores and in Ethiopia for rodents. In addition, the highest numbers of threatened species occurred in D.R. Congo, Rwanda and Uganda for rodents and in South Africa, Tanzania and Cameroon for insectivores. The conservation implications of these results were discussed.     

Environmental and historical constraints on global patterns of amphibian richness

Our knowledge of the broad-scale ecology of vertebrate ectotherms remains very limited. Despite ongoing declines and sensitivity to environmental change, amphibian distributions are particularly poorly understood. We present a global analysis of contemporary environmental and historical constraints on amphibian richness, the first for an ectotherm clade at this scale. Amphibians are presumed to experience environmental constraints distinct from those of better studied endothermic taxa due to their stringent water requirements and the temperature dependence of their energetic costs and performance. Single environmental predictors set upper bounds on, but do not exclusively determine, amphibian richness. Accounting for differing regional histories of speciation and extinction helps resolve triangular or scattered relationships between core environmental predictors and amphibian richness, as the relationships' intercepts or slopes can vary regionally. While the magnitude of richness is strongly determined by regional history, within-region patterns are consistently jointly driven by water and temperature. This confirms that ecophysiological constraints extend to the broad scale. This coupling suggests that shifts in climatic regimes will probably have dramatic consequences for amphibians. Our results illustrate how the environmental and historical explanations of species richness gradients can be reconciled and how the perspectives are complements for understanding broad-scale patterns of diversity.