热稳定性伯克霍尔德菌脂肪酶A突变体的筛选

摘要:【目的】为更好地提高伯克霍尔德菌ZYB002脂肪酶LipA在TMP纸浆造纸工艺中的应用,有必要利用蛋白质工程技术,提高其热稳定性。【方法】基于B-factor值筛选LipA多肽链中潜在的突变位点,利用迭代饱和诱变技术,构建突变文库,筛选热稳定性提高的突变体。【结果】利用上述方法,从4个突变文库中分别筛选到在55℃下,半衰期较野生型脂肪酶LipA分别提高了1.8倍、3倍、2.2倍和1.7倍的脂肪酶突变体。【结论】基于B-factor值选择突变位点,利用迭代饱和突变技术,快速筛选到热稳定性有显著提高的突变体。     

基于空腔填充效应构建伯克霍尔德菌脂肪酶LipA的热稳定性突变体

【目的】中温伯克霍尔德菌胞外脂肪酶LipA在工业领域具有重要的应用价值。利用蛋白质工程技术来提高其热稳定性,对开发脂肪酶LipA酶制剂及提高其应用范围及应用效果,具有重要的意义。【方法】利用生物信息学软件Castp、Voronoia和Cave分析LipA分子中存在的空腔及其组成氨基酸残基;利用FoldX软件构建上述氨基酸残基的突变体电子文库,并基于空腔效应(体积变小)、自由能变化值(降低)和空间结构特点等对前述突变体电子文库进行筛选。从突变体电子文库中选择具有代表性的突变体,通过基因工程技术,引入突变。经诱导表达后,实验验证并筛选出热稳定性的突变体。【结果】构建了一个由58个突变体组成的电子文库;并对其中17个代表性的突变体进行了实验验证;筛选到2个热稳定性有明显提高的突变体LipA-His15Pro和LipA-Ala210Val;其叠加突变体LipA-His~(15)Pro/Ala~(210)Val的T50~(12)较野生型LipA提高了8°C,在55°C下的半衰期较野生型脂肪酶LipA提高了23.1倍。【结论】基于空腔填充技术构建热稳定性伯克霍尔德菌胞外脂肪酶LipA突变体,是一种行之有效的策略。     

洋葱伯克霍尔德菌脂肪酶：一种应用前景广阔的生物催化剂

洋葱伯克霍尔德菌脂肪酶对有机溶剂（醇）、热、氧化剂、表面活性剂、去污剂、蛋白酶等具有良好的抗性,在有机合成、对映体拆分、非水相催化等领域应用十分广泛。综述了洋葱伯克霍尔德菌脂肪酶的发酵生产、分离纯化、基因克隆与表达、固定化与生物印迹、蛋白质结构解析及应用研究等,并展望了其未来发展方向,以期为该工业酶的研发与广泛应用提供参考。     

耐受有机溶剂洋葱伯克霍尔德菌ZYB002全细胞脂肪酶酶学性质

一株对多种有机溶剂具有良好耐受能力的产脂肪酶菌株ZYB002经分子鉴定为洋葱伯克霍尔德菌。其产生的细胞结合脂肪酶最适温度为65°C,最适pH为8.0,在低于70°C和pH3-8.5的范围内,全细胞脂肪酶保持稳定。Ca2+、K+、Na+和NO3-等离子对脂肪酶活性有激活作用,而Zn2+有抑制效应。全细胞脂肪酶对正丁醇有较强的耐受能力,但曲拉通X-100对脂肪酶活性有强烈的抑制效应。洋葱伯克霍尔德菌ZYB002全细胞脂肪酶良好的碱稳定性、热稳定性和有机溶剂耐受性,表明该全细胞脂肪酶具有重要的工业应用潜力。     

土壤中产脂肪酶洋葱伯克霍尔德菌的分离与鉴定

洋葱伯克霍尔德菌(Burkholderia cepacia)在生物防治、生物降解等农业领域有着广泛的应用,它产生的脂肪酶则在有机合成、精细化工等领域潜力巨大。采用改良的TB-T平板筛选法从土壤中初步筛选出300株洋葱伯克霍尔德菌,然后用脂肪酶活性检测平板对300株菌进行筛选,最终获得6株脂肪酶产量高的菌,通过发酵发现6株菌均有较好的产脂肪酶能力。随后通过16S rDNA比对的方法将6株全部鉴定为B.cepacia。在此基础上,采用HaeⅢ-recA RFLP和基因种特异性PCR对6株菌进行了基因种鉴定,结果表明JWT16、G63YL、WJ158和JWT137属于Burkholderia cenocepacia菌,JWP9属于Burkhold-eria vietnamiensis,JWT267则属于Burkholderia multivorans。     

伯克霍尔德氏菌ZYB002脂肪酶lipC24基因的克隆、表达及其酶学性质

【目的】克隆伯克霍尔德菌ZYB002菌株中的新型脂肪酶lip C24基因,测定其基本酶学性质,为后续深入研究该基因在菌株中的生理功能奠定基础。【方法】根据洋葱伯克霍尔德菌JK321菌株的全基因组DNA信息,直接设计引物从伯克霍尔德菌ZYB002菌株基因组中扩增出lip C24基因,并对之进行原核表达、重组蛋白的纯化及酶学性质分析。【结果】lip C24基因全长1317 bp,编码438个氨基酸残基;多肽链中具有保守五肽-G-X1-S-X2-G-序列;重组蛋白Lip C24的分子量为45 k Da;能有效水解各种对硝基苯酯,对中链脂肪酸的对硝基苯酯表现出偏爱性;其催化水解反应的最适温度为40℃,最适p H7.5;40℃下的半衰期为15.72 min,在p H 7.0-8.0的条件下,具有较好的稳定性。【结论】lip C24的编码产物为一个45 k Da蛋白,具有明显的脂肪酶活性,为中温中性脂肪酶。     

从植物根际定向批量筛选广谱有机溶剂耐受性脂肪酶产生菌

洋葱伯克霍尔德菌脂肪酶是一类具有重要工业应用价值的优良脂肪酶之一。根据已公布的洋葱伯克霍尔德菌基因组信息, 在传统的洋葱伯克霍尔德菌选择性培养基中添加适量的氨苄青霉素和卡那霉素, 从植物根际的土壤中筛选洋葱伯克霍尔德菌。对获得的单菌落再用含罗丹明B指示剂的产脂肪酶定性检测平板检测, 从4个根际土壤中筛选到35株产脂肪酶的洋葱伯克霍尔德菌, 阳性率达到65%。其中15株对体积浓度为10%的苯、己烷和正庚烷同时具有耐受性。用recA基因分子鉴定上述15株菌种, 全部属于洋葱伯克霍尔德菌菌群。     

嗜盐脂肪酶产生菌的筛选及其粗酶性质

从内蒙古锡林浩特地区盐湖菌种样品分离获得一株嗜盐脂肪酶高产菌, 结合生理生化试验和16S rDNA序列分析结果, 鉴定并命名为Haloterrigena thermotolerans Z4。该菌最适生长NaCl浓度为3.5 mol/L, 最高生长温度为60°C, 属于嗜盐耐热古生菌。粗酶性质研究表明, 金属离子(Ba2+、Fe2+、Cu2+)对酶有激活作用, 酶活不同程度的提高了20%~30%; 该酶受EDTA的抑制, 酶活下降了20%, 受PMSF的完全抑制。该酶对NaCl有较高的依赖专一性, 至少需要0.5 mol/L NaCl维持活性并且高浓度NaCl可以提高其耐热水平。醇类物质对于提高酶的热稳定性有一定作用, 丙三醇效果最好。该酶对短链底物对硝基苯酚丁酸酯(p-NPB)的最适水解条件为：pH 8.0、70°C、3.5 mol/L NaCl; 而对长链底物对硝基苯酚十六酸酯(p-NPP)的最适水解条件为：pH 8.0、80°C、2.5 mol/L NaCl。     

热稳定碱性脂肪酶产生菌的筛选及发酵条件的优化

从渤海湾盐碱地被油污染的土样中分离筛选出6株产热稳定碱性脂肪酶菌株。其中菌株1-7产脂肪酶能力较强,其最高酶活为8.67U/mL。根据其16S rDNA序列分析和Biolog生理生化分析,初步鉴定为醋酸钙不动杆菌(Acinetobacter calcoaceticus)。初步酶学性质研究表明该菌所产脂肪酶具有较好的热稳定性,最适作用pH为9.0。摇瓶实验表明,该菌株最适产酶培养基为(g/L):玉米粉10,黄豆饼粉20,K_2HPO_4 1,NaNO_3 5,橄榄油10。最适产酶条件为:初始pH 8.0,培养温度37℃,培养时间29 h。接种量为2%,250 mL摇瓶装液量为30 mL。     

洋葱伯克霍尔德菌脂肪酶的基因改造及其在毕赤酵母中组成型和诱导型的表达

【目的】克隆洋葱伯克霍尔德菌(Burkholderia cepacia)脂肪酶基因,实现其在毕赤酵母中快速、安全和稳定性的大量表达。【方法】首先设计引物扩增B.cepacia脂肪酶基因,然后应用生物信息学方法分析B.cepacia和毕赤酵母整体密码子使用情况、脂肪酶基因信号肽及密码子偏好性。在此基础上,运用overlap PCR对脂肪酶基因中低使用频率密码子进行改造并同时降低基因的G+C含量,获得优化的脂肪酶基因。再分别把原始和优化的脂肪酶基因导入载体pGAPZα和pPIC9K中,获得组成型表达载体pGAPlipW、pGAPlipO和诱导型表达载体pPIClipW、pPIClipO。分别将所得4种载体转入GS115中,得到一系列工程菌。经发酵和NTA树脂纯化后,对脂肪酶的酶学性质进行了初步研究。【结果】4种工程菌的脂肪酶活力分别为pPIClipW37.8U/mL,pPIClipO129.5U/mL,pGAPlipW40.2U/mL和pGAPlipO184.3U/mL。改造后脂肪酶活力比原始脂肪酶提高了4.6倍。酶学性质研究表明,脂肪酶在60℃时活力最高,在40℃-65℃范围内非常稳定;脂肪酶最适pH值为9.0,在pH6.0-pH10.0范围均表现很好的稳定性。【结论】通过overlap PCR改造后的脂肪酶显著提高了其在毕赤酵母中的表达效率,且GAP启动子比AOX1启动子更适合于B.cepacia脂肪酶的表达。大量表达的重组脂肪酶的性质与野生脂肪酶的性质相同,符合生产要求。     

Optimization of thermostable lipase production from a thermophilic Geobacillus sp. using Box-Behnken experimental design

Thermostable lipase production by Geobacillus thermoleovorans was optimized in shake-flask cultures using Box-Behnken experimental design. An empirical model was developed through response surface methodology to describe the relationship between tested variables (Tween 80, olive oil, temperature and pH) and enzyme activity. Maximum enzyme activity (495 U l^–1) was attained with Tween 80 at 5 g l^–1; olive oil at 60 g l^–1; 70 °C and pH 9. Experimental verification of the model showed a validation of 95%, which is more than 4-fold increase compared to the basal medium.     

Enhanced production and characterization of a highly thermostable alkaline protease from Bacillus sp. P-2

An obligatory alkalophilic Bacillus sp. P-2, which produced a thermostable alkaline protease was isolated by selective screening from water samples. Protease production at 30 °C in static conditions was highest (66 U/ml) when glucose (1% w/v) was used with combination of yeast extract and peptone (0.25% w/v, each), in the basal medium. Protease production by Bacillus sp. P-2 was suppressed up to 90% when inorganic nitrogen sources were supplemented in the production medium. Among the various agro-byproducts used in different growth systems (solid state, submerged fermentation and biphasic system), wheat bran was found to be the best in terms of maximum enhancement of protease yield as compared to rice bran and sunflower seed cake. The protease was optimally active at pH 9.6, retaining more than 80% of its activity in the pH range of 7–10. The optimum temperature for maximum protease activity was 90 °C. The enzyme was stable at 90 °C for more than 1h and retained 95 and 37% of its activity at 99 °C and 121 °C, respectively, after 1 h. The half-life of protease at 121 °C was 47 min.     

Investigation of lipase production by a new isolate of Aspergillus sp.

Fungi isolated from soil were screened for exogenous lipolytic activity. The highest lipase activity was found in a new soil isolate of Aspergillus sp. Some optimal cultural parameters influencing the growth and production of extracellular lipase from this Aspergillus sp. were investigated. The lipase yield was maximum on day 4 of incubation of the culture at pH 5.5 and 30 °C. When the medium was prepared using olive oil as carbon source and peptone as a nitrogen source, better lipase yields were obtained. Aeration enhanced growth and lipase production.     

珠子参叶皂苷对脂肪酶抑制机制及降血脂研究

珠子参叶是五加科(Araliaca)植物珠子参(Panax japonicas var. major)的干燥带梗叶,为秦巴地区特色中药材。为合理开发利用珠子参叶并阐明其化学成分,该研究利用HPLC方法分析珠子参叶皂苷部位的主要化学成分,测定珠子参叶皂苷部位的脂肪酶抑制活性及抑制类型,通过分子对接及动物实验验证脂肪酶抑制机制及降血脂作用。结果表明:(1)珠子参叶皂苷部位主要成分为20(S)-人参皂苷Rg₂、20(R)-人参皂苷Rg₂、人参皂苷Rb₂、人参皂苷Rb₃、人参皂苷Rd、人参皂苷Rh₂。(2)珠子参叶皂苷部位、20(R)-人参皂苷 Rg₂对脂肪酶具有较强的抑制作用,其IC₅₀分别为0.14、2.30 μmol·L^-1。(3)珠子参叶皂苷部位、20(R)-人参皂苷Rg₂、人参皂苷Rb₃对脂肪酶的抑制为可逆性抑制,抑制类型为非竞争型抑制。(4)配体与ARG337B、ASP331B、ILE248B残基结合可能有助于提高配体的脂肪酶抑制活性。(5)珠子参叶总皂苷可以显著降低高脂血症小鼠血清中胆固醇和甘油三酯的含量。该研究为珠子参叶在降血脂方面的深入开发和利用提供了理论参考。     

Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation

The crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation was determined at 1.5A resolution. This structure highly resembles that of Serratia marcescens LipA in an open conformation, except for the structures of two lids. Lid1 is anchored by a Ca2+ ion (Ca1) in an open conformation, but lacks this Ca1 site and greatly changes its structure and position in a closed conformation. Lid2 forms a helical hairpin in an open conformation, but does not form it and covers the active site in a closed conformation. Based on these results, we discuss on the lid-opening mechanism.     

Antifungal secondary metabolites from endophytic Verticillium sp.

Endophytes were isolated from roots of wild Rehmannia glutinosa to screen the strains with antifungal metabolites. A strain identified as Verticillium sp. was selected for chemical and biological investigations because of the strong antifungal activity of the crude extract against Pyricularia oryzae P-2b. Chemical investigations of culture broth afforded three compounds: 2,6-dihydroxy-2-methyl-7-(prop-1E-enyl)-1-benzofuran-3(2H)-one, massariphenone and ergosterol peroxide. The metabolites were isolated by silica gel and Sephadex LH-20, 2,6-dihydroxy-2-methyl-7-(prop-1E-enyl)-1-benzofuran-3(2H)-one was reported for the first time and the chemical structure was established following the analysis of NMR, UV, IR, MS data. 2,6-Dihydroxy-2-methyl-7-(prop-1E-enyl)-1-benzofuran-3(2H)-one and ergosterol peroxide displayed clear inhibition of the growth of three pathogens as well as Verticillium sp.     

产脂肪酶菌株筛选及柠檬酸杆菌产酶条件优化

脂肪酶可以催化甘油三酯水解成脂肪酸和甘油,已广泛应用在工业领域,而获得产酶微生物是研究的基础。采用油脂平板法筛选出1株脂肪酶产生菌。经16S rRNA序列分析可知,该菌株属于柠檬酸杆菌(Citrobacter werkman and Gillen)。单因素试验对其进行产酶条件优化,优化后产酶条件（g/L）：淀粉2.0,KH₂PO₄ 1.0,K₂HPO₄·3H₂O 2.2,(NH₄)₂SO₄ 1.0,MgSO₄·7H₂O 0.1,牛肉膏2.0,橄榄油10.0 mL,pH 7.5,接种量1.5%(v/v),37 ℃培养43 h。获得最大酶活为384 U/mL,是优化前的13倍。可以利用该菌制备脂肪酶。