Replacement of the axial histidine heme ligand with cysteine in nitrophorin 1: spectroscopic and crystallographic characterization

To evaluate the potential of using heme-containing lipocalin nitrophorin 1 (NP1) as a template for protein engineering, we have replaced the native axial heme-coordinating histidine residue with glycine, alanine, and cysteine. We report here the characterization of the cysteine mutant H60C_NP1 by spectroscopic and crystallographic methods. The UV/vis, resonance Raman, and magnetic circular dichroism spectra suggest weak thiolate coordination of the ferric heme in the H60C_NP1 mutant. Reduction to the ferrous state resulted in loss of cysteine coordination, while addition of exogenous imidazole ligands gave coordination changes that varied with the ligand. Depending on the substitution of the imidazole, we could distinguish three heme coordination states: five-coordinate monoimidazole, six-coordinate bisimidazole, and six-coordinate imidazole/thiolate. Ligand binding affinities were measured and found to be generally 2–3 orders of magnitude lower for the H60C mutant relative to NP1. Two crystal structures of the H60C_NP1 in complex with imidazole and histamine were solved to 1.7- and 1.96-Å resolution, respectively. Both structures show that the H60C mutation is well tolerated by the protein scaffold and suggest that heme–thiolate coordination in H60C_NP1 requires some movement of the heme within its binding cavity. This adjustment may be responsible for the ease with which the engineered heme–thiolate coordination can be displaced by exogenous ligands.     

Antimony and bismuth dithiocarboxylates: Synthesis, characterization, crystal structures of [Sb(S2Ctol)3] and [Bi(S2CPh)3] and their transformation to polycrystalline M2S3 (M = Sb, Bi)

Antimony and bismuth dithiocarboxylates of the type [M(S₂CAr)₃] (M = Sb, Bi; Ar = C₆H₅ (Ph), 4-MeC₆H₄ (tol)) have been synthesized. These complexes were characterized by elemental analysis, IR, UV-Vis, and ¹H NMR spectroscopy. X-ray crystal structural analyses of [Sb(S₂Ctol)₃] and [Bi(S₂CPh)₃] showed that the dithiocarboxylates are asymmetrically chelated to metal atom. The latter acquires a distorted pentagonal pyramidal geometry as a consequence of the presence of a stereochemically active lone pair of electrons. Pyrolysis of these complexes either in a furnace or in refluxing diphenylether gave M₂S₃ as characterized by their XRD pattern and EDAX analysis.     

Physicochemical characterization of deflazacort: thermal analysis, crystallographic and spectroscopic study

The solid state properties of deflazacort (1-(1beta,16alpha)-21-(acetyloxy)-11-hydroxy-2'-methyl-5'H-pregna-1,4-dieno[17,16-d]oxazole-3,20-dione, 1) were investigated using differential scanning calorimetry (DSC), thermogravimetry (TG), single-crystal X-ray diffraction, solid and liquid nuclear magnetic resonance spectroscopy ((13)C NMR), Fourier transform infrared and Raman spectroscopy (FTIR and FT Raman). From the trends observed in the crystal structure and spectral data some conclusions can be made about hydrogen bonding, molecular conformation and crystal packing. Compound 1 crystallizes in an orthorhombic cell, space group P2(1)2(1)2(1) and the following lattice parameters: a=11.2300(5), b=12.8161(8), c=16.171(1)A, V: 2327.4(2)A(3), D(c): 1.260g/cm(3), R1=0.0479, wR2=0.1012. The crystal structure is stabilized by intra and intermolecular interactions, which provides for a very closely packed form. The NMR data indicated that 1 shows a similar conformation in solid and liquid state; while, thermal data revealed that 1 follows a monophasic pattern with a DSC melting peak at 258.4 degrees C (DeltaH 99.7Jg(-1), n=3), indicating that 1 is thermally stable as solid; but, as liquid is unstable to undergo a thermal decomposition reaction. The reactivity of 1 toward light and moisture was examined via DSC and TLC. The data indicated that 1 do not interact with water to give hydrated forms or decomposition products; however, light degrades 1.     

A high-spin Fe(II)/low-spin Fe(III) redox couple featuring the hydro[tris(4-chloro-3,5-dimethyl-pyrazolyl)]borate ligand: Synthesis, spectroscopic and X-ray crystallographic characterization

The white homoleptic high-spin iron(II) complexes Fe[Tp^Me2,4Cl]₂ (1) was isolated in quantitative yield from reaction mixtures containing 1 equiv of FeCl₂(THF)_1.5 and 2 equiv of K[Tp^Me2,4Cl] (Tp^Me2,4Cl = hydrotris[(4-chloro-3,5-dimethyl-pyrazolyl)]borate). Its purple low-spin iron(III) counterparts 1[O₃SCF₃] and 1[PF₆] were synthesized and isolated in 85% yields upon treatment of 1 with 1 equiv of silver triflate and silver hexafluorophosphate, respectively. The three paramagnetic compounds are air and thermally stable as solids and in solution; they were characterized by elemental analyses, IR, magnetic susceptibility measurements, ¹H NMR, and Mössbauer spectroscopy. In addition, 1[PF₆] was authenticated by a single-crystal X-ray diffraction. The two scorpionate ligands are κ³-N,N′,N′′ ligated to the central Fe^III ion, forming an almost perfect FeN₆ octahedron with an average Fe-N bond distance of 1.9551(18) Å. In addition, complex 1 which oxidizes reversibly at E_1/2 = 0.483 V/SCE (ΔE_p = 94 mV), remains high-spin (S = 2) when the temperature is lowered to 2 K.     

Synthesis and spectroscopic characterization of organotin(IV) complexes with 2-benzoylpyridine-N(4)-cyclohexylthiosemicarbazone (HBPCT): X-ray crystal structure of [PhSnCl2(BPCT)]

The reaction of 2-benzoylpyridine-N(4)-cyclohexylthiosemicarbazone [HBPCT, (1)] ligand with organotin(IV) chloride(s) lead to the formation of three new organotin(IV) complexes: [MeSnCl₂(BPCT)] (2), [PhSnCl₂(BPCT)] (3) and [Ph₂SnCl(BPCT)] (4). The ligand (1) and its organotin(IV) complexes (2-4) have been synthesized and characterized by CHN analyses, molar conductivity, UV-Vis, FT-IR and ¹H NMR spectral studies. The single crystal X-ray diffraction studies indicated that [PhSnCl₂(BPCT)] (3) is six coordinated and adopts strongly a distorted octahedral configuration with the coordination through pyridine-N, azomethine-N and thiolato-S atoms of the ligand. The crystal system of [PhSnCl₂(BPCT)] (3) is orthorhombic with space group P2ac2n and the unit cell dimensions: a = 28.1363(5) Å, b = 9.5970(2) Å, c = 9.4353(2) Å.     

Synthesis, spectroscopic and X-ray characterization of a copper(II) complex with the Schiff base derived from pyridoxal and aminoguanidine: NMR spectral studies of the ligand

A copper(II) complex with the pyridoxal-aminoguanidine (PL-AG) Schiff base adduct, as an organic compound of the very potent biological activity and promising pharmacological importance in the treatment of diabetic complications, has been prepared and characterized. The X-ray structural analysis of the [CuCl2(PL-AG)] complex showed that it has a distorted pseudo-square-pyramidal (4+1) structure with the tridentate ONN Schiff base in the equatorial plane, with the Cu-O(1), Cu-N(1) and Cu-N(3) bond lengths of 1.917(2)A, 1.930(2)A and 1.984(2)A, respectively. The bond length of the equatorial Cu-Cl(1) is 2.279(1)A, while that of the apical Cu-Cl(2) is 2.792(1)A. Pyridoxal fragment is coordinated in its zwitterionic form. In addition to the X-ray structural analysis, the complex was characterized by IR spectrometric, conductometric and magnetic techniques, and the ligand itself by IR, 1H and 13C NMR spectra.     

Titanocene complexes with nonlinear pseudohalide ligands: Synthesis, spectroscopic characterization and crystal structure

Binuclear titanocene complexes [Cp₂Ti(tcm)]₂O (4), [Cp₂Ti(dca)]₂O (5) and [Cp₂Ti(dcnm)]₂O (6) (tcm⁻ = tricyanomethanide, dca⁻ = dicyanamide and dcnm⁻ = dicyanonitrosomethanide) were synthesized in moderate yields by the reaction of Cp₂TiCl₂ (1) with respective alkali metal pseudohalide salts in the aqueous solution. When the reaction was carried out in dry organic solvents, mononuclear compounds Cp₂Ti(tcm)₂ (2) and Cp₂Ti(dca)₂ (3) were isolated. Preparation of dipseudohalide complex Cp₂Ti(dcnm)₂ by this manner was unsuccessful due to decomposition of dcnm ligand resulting in formation of oxygen-bridged compound 6. All prepared compounds were characterized by elemental analysis, NMR, Raman, infrared and UV-Vis spectroscopy. Molecular structures of 2, 4 and 6 (two polymorphs) have been determined by single-crystal X-ray diffraction analysis.     

Reactivity of [PdCl(bdtp)](BF4) with monodentate neutral and anionic ligands. Structure of [Pd(bdtp)(PPh3)](BF4)2 (bdtp = 1,5-bis(3,5-dimethyl-1-pyrazolyl)-3-thiapentane)

Complex [PdCl(bdtp)](BF₄), in presence of AgBF₄ or NaBF₄, reacts with pyridine (py), triphenylphosphine (PPh₃), cyanide (CN⁻), thiocyanate (SCN⁻) or azide (N₃⁻) ligands, leading to the formation of the following complexes: [Pd(bdtp)(py)](BF₄)₂ [1](BF₄)₂, [Pd(bdtp)(PPh₃)](BF₄)₂ [2](BF₄)₂, [Pd(CN)(bdtp)](BF₄) [3](BF₄), [Pd(SCN)(bdtp)](BF₄) [4](BF₄) and [Pd(N₃)(bdtp)](BF₄) [5](BF₄). These complexes were characterised by elemental analyses, mass spectrometry, conductivity measurements, infrared and NMR spectroscopies. The crystal structure of [2](BF₄)₂ was determined by single-crystal X-ray diffraction methods. The metal atom is coordinated by two azine nitrogen atoms, and one sulfur atom of the thioether-pyrazole ligand and one triphenylphosphine in a distorted square-planar geometry.     

Encapsulation of [Mn(bpy)3] cations in 2D [Mn(dca)3] sheet: Synthesis, X-ray structure and EPR study

The reaction of Mn(NO₃)₂ · 4H₂O, 2,2′-bipyridine (bpy) and sodium dicyanamide (dca) in aqueous medium yielded the {[Mn(bpy)₃][Mn(dca)₃]₂}_n (1). The single-crystal X-ray analysis of 1 revealed that the anionic part of the complex, [Mn(dca)₃]⁻, features infinite 2D sheets with a honeycomb-like porous structure having a void space of ca. 12 Å in which [Mn(bpy)₃]²⁺ cations are encapsulated to yield a fascinating molecular assembly. Mn^II ions possess an octahedral geometry both in the anionic and cationic components of complex 1. In the anionic component, each Mn^II ion is bridged by three pairs of dicyanamide anions in an end-to-end fashion with two other Mn^II ions from adjacent [Mn(dca)₃]⁻ moieties. This type of linking propagates parallel to the bc crystallographic plane to form 2D sheets. [Mn(bpy)₃]²⁺ is found to have somewhat “squeezed” upon encapsulation. No measurable magnetic interaction was evidenced through variable temperature magnetic susceptibility measurements. However, in addition to the broad g ≈ 2 resonance typical of magnetically diluted [Mn(bpy)₃]²⁺ cations, EPR spectroscopy evidenced exchange narrowing of the [Mn(dca)₃]⁻ resonance at g ≈ 2 thus indicating operation of weak magnetic interactions extended over the whole 2D network through the dca⁻ bridges.     

Crystal and solution structure of oxo rhenium(V) complexes with cysteine and cysteine methyl ester

 The monooxo rhenium(V) complexes of cysteine (complex 1) and cysteine methyl ester (complex 2) were synthesised via a ligand exchange reaction starting from gluconatooxorhenium(V). Unexpectedly, the obtained oxorhenium(V) complex with cysteine methyl ester (2) was partially saponified. Both complexes were characterised by common analytical techniques in their solid state. Thus, an octahedral complex structure with 2(NH₂,S) co-ordination in the equatorial plane and one carboxyl group bound trans to the oxo group is proven for complex 2 by X-ray diffraction. Furthermore, the existence of a dioxo species at higher pH was proven for the first time with this type of ligand by determining the nearest co-ordination sphere of the rhenium centre in solution at a pH of 12 using extended X-ray absorption fine structure spectroscopy. Received: 20 July 1998 / Accepted: 2 December 1998     

Copper(I) and silver(I) tertiary phosphines complexes: Synthesis, X-ray structures and spectroscopic characterization

Six new complexes, [Cu₄I₄(PPh₂Cy)₄]·2H₂O (1), [CuI(PPhCy₂)₂] (2), [CuCl(PPhCy₂)₂] (3), and [CuBr(PPh₃)₃]·CH₃CN (4), [Ag(PPhCy₂)₂(NO₃)] (5), [Ag(PCy₃)(NO₃)]₂ (6) [where Ph = phenyl, Cy = cyclohexyl], have been synthesized and structurally characterized by X-ray diffraction, IR absorption spectra and NMR spectroscopic studies (except complex 4). The X-ray diffraction analysis of complex (1), pseudo polymorph of complex [Cu₄I₄(PPh₂Cy)₄], reveals a stella quadrangula structure. The four corners of the cube are occupied by copper(I) atoms and four I atoms are present at the alternative corners of the cube, further more the copper(I) atoms are coordinated to a monodentate tertiary phosphine. Complexes (2) and (3) are isostructural with trigonal planar geometry around the copper(I) atom. The crystal structure of complex (4) is a pseudo polymorph of complex [CuBr(PPh₃)₃] and the geometrical environment around the copper(I) centre is distorted tetrahedral. In the Ag^I complexes (5) and (6), the central metal atoms have pseudo tetrahedral and trigonal planar geometry, respectively. Spectroscopic and microanalysis results are consistent with the single crystal X-ray diffraction studies.     

Synthesis and crystal structures of four pH-dependent Pb(II) and Cd(II) phosphonates based on a novel ligand, 3-phosphono-benzoic acid

Four metal phosphonate hybrid compounds, [Pb(Hpbc)] (1), [Pb₃(pbc)₂(H₂O)₂] (2), [Cd(H₂pbc)₂(H₂O)₂] (3) and [Cd_1.5(pbc)(H₂O)_1.5] · 0.5H₂O (4) (H₃pbc = 3-phosphono-benzoic acid) were successfully synthesized by the hydrothermal/solvothermal reaction of metal acetate and 3-phosphono-benzoic acid. Compounds 1-4 were pH-dependent products and characterized by elemental analysis, Fourier transform infrared (FT-IR) spectra and single-crystal X-ray diffraction studies. Compound 1 is a two-dimensional (2D) structure constructed by inorganic layer and organic pendant. With the increase of pH value, structure 2 shows 3D inorganic framework with distributing organic moieties in the channels. In 3, the Cd₂O₁₀ dimers are linked by alternating terminal and bridging ligands, resulting in 1D chain structure. Compound 4 is a 2D structure where the 1D inorganic chains are connected by the organic moieties of the ligands.     

Synthesis, structure and characterization of two Pb(II) phosphonates with layered or 3D structures

Hydrothermal reactions of lead(II) acetate and N-cyclohexylimino-bis(methylenephosphonic acid) (C₆H₁₁N(CH₂PO₃H₂)₂, H₄L¹) or N,N′-bis(phosphonomethyl)-6-aminocaproic acid (HO₂C(CH₂)₅N(CH₂PO₃H₂)₂, H₅L²), respectively, resulted in two different new lead diphosphonates, namely, Pb₂L¹ · H₂O (1) and Pb₂[HL²] (2). Their crystal structures have been determined by single crystal X-ray diffraction. The structure of compound 1 contains a 〈0 0 1〉 lead(II) diphosphonate hybrid layer formed by Pb(II) ions interconnected by L¹ anions. Such layers are further interlinked by van der Waals force into a supramolecular structure. In compound 2, the Pb(II) ions are interconnected by the -N(CH₂PO₃H)(CH₂PO₃) and -CO₂ groups of the HL² anions forming an organic-inorganic hybrid layer. These layers are further interlinked by the -(CH₂)₅ groups of the HL² anions into a 3D structure.     

Organotin(IV) 4-methoxyphenylethanoates: Synthesis, spectroscopic characterization, X-ray structures and in vitro anticancer activity against human prostate cell lines (PC-3)

A series of organotin(IV) carboxylates, [Bu₂SnL₂] (1), [Et₂SnL₂] (2), [Me₂SnL₂] (3), [Bu₃SnL]_n(4), [Me₆Sn₂L₂]_n(5), [Ph₃SnL]_n(6) and [Oct₂SnL₂] (7), where L = O₂CCH₂C₆H₄OCH₃-4, have been synthesized. These complexes have been characterized by elemental analysis, FT-IR and multinuclear NMR (¹H, ¹³C and ¹¹⁹Sn). Based on spectroscopic results, the ligand appeared to coordinate to the Sn atom through COO moiety. Single crystal analysis has shown a bridging behavior of ligand in tributyl- and trimethyltin(IV) derivatives, and a chelating bidentate mode in diethyltin(IV) complex. Bioassay results have shown that these compounds have good antibacterial, antifungal and antitumor activity. The activity against prostate cancer cell lines (PC-3) decreased in the order 1 > 5 > 2 > 3 > 7.     

Novel p-tolylimido rhenium(V) complexes incorporating quinoline-2-carboxylate ion - Synthesis, X-ray studies, spectroscopic characterization and DFT calculations

Novel p-tolylimido rhenium(V) complexes trans-[Re(p-NC₆H₄CH₃)X₂(quin-2-COO)(PPh₃)] and cis-[Re(p-NC₆H₄CH₃)X₂(quin-2-COO)(PPh₃)]·MeCN have been obtained in the reactions of [Re(p-NC₆H₄CH₃)X₃(PPh₃)₂] (X = Cl, Br) with quinoline-2-carboxylic acid. The compounds were identified by elemental analysis IR, UV-Vis spectroscopy and X-ray crystallography. The electronic structures of trans- and cis-halide isomers of [Re(p-NC₆H₄CH₃)Cl₂(quin-2-COO)(PPh₃)] have been calculated with the density functional theory (DFT) method. Additional information about binding in the compounds [Re(p-NC₆H₄CH₃)Cl₂(quin-2-COO)(PPh₃)] with cis- and trans-halide arrangement has been obtained by NBO analysis. The electronic spectra of trans and cis isomers of [Re(p-NC₆H₄CH₃)Cl₂(quin-2-COO)(PPh₃)] were investigated at the TDDFT level employing B3LYP functional in combination with LANL2DZ.     

Synthesis, characterization and copper chemistry of a non-symmetric phenanthroline ligand: 2-Methyl-9-(3,5-dimethyl-N-pyrazolylmethyl)-1,10-phenanthroline

The synthesis of an unsymmetrical phenanthroline-based ligand, 2-methyl-9-(3,5-dimethylpyrazolylmethyl)-1,10-phenanthroline (L), and its cupric [Cu(II)] (1) and cuprous [Cu(I)] (2) complexes, are reported. The X-ray structures of each of these Cu complexes show distinct changes in coordination environments consistent with the geometrical preferences of the two oxidation states. In the solid-state, the Cu(II) complex (1) adopts a geometry best described as trigonal bipyramidal, while the Cu(I) complex (2) consists of a single dicationic dimer in which the ligand bridges between two copper ions, separated by 4.26 Å. The two Cu(I) coordination sites differ in 2 with one copper center complexed in a trigonal planar geometry and the other copper in a distorted tetrahedral environment; the latter coordination results from an additional CH₃CN ligand. Complex 1 exhibits a reversible redox process at −0.34 V versus Fc/Fc⁺ in CH₃CN, attributable to the Cu²⁺/Cu⁺ couple, while the dimeric Cu(I) complex (2) does not display this redox couple on the CV timescale. Over minutes however, complex 1 does oxidize in the presence of dioxygen to 2 in CH₃CN.     

Palladium(II) complexes of 2-, 3-, and 4-quinolinyl(diphenyl)phosphane and di-(3-quinolinyl)phenylphosphane: Synthesis, characterization, and catalytic screening

One previously known and three novel quinolinyl phosphanes were synthesized by either a reaction between a lithiated diphenylphosphane and the appropriate chloroquinoline or by a reaction between a lithiated haloquinoline and an arylchlorophosphane. The reaction of the quinolinyl phenylphosphane ligands with PdCl₂(cod) produced monomeric palladium complexes in diethyl ether and dimeric, chlorine-bridged complexes in dichloromethane. Crystal structures of the palladium complexes confirm that the quinolinyl phenylphosphanes do not form chelated structures while bonded to the metal centre. 2-Quinolinyl(diphenyl)phosphane has a tendency to form a cis-isomer while bonded to the metal centre in the mononuclear complex due to attractive interactions between two ligands. A catalytic study showed that the quinolinyl phenylphosphane ligands are moderately active in the Suzuki-Miyaura coupling of various aryl halides in air.     

Synthesis, characterization, X-ray molecular structure and catalase-like activity of a non-heme iron complex: Dichloro[N-propanoate-N,N-bis-(2-pyridylmethyl)amine]iron(III)

In this work we present the synthesis and characterization of the complex dichloro[N-propanoate-N,N-bis-(2-pyridylmethyl)amine]iron(III) [Fe^III(PBMPA)Cl₂]. The ligand LiPBMPA was synthesized through the Michael reaction of BMPA with methylacrylate, followed by alkaline hydrolysis. The complex [Fe^III(PBMPA)Cl₂] has been synthesized by the reaction of the ligand with FeCl₃ · H₂O and was mainly characterized by cyclic voltammetry, conductivimetry, and electronic, infrared and Mössbauer spectroscopies, and by X-ray structural analysis, which showed an iron center coordinated by one carboxylate oxygen in a monodentate way, one tertiary amine, two pyridine groups and two chloride ions. It has been proposed that in water the chloride ligands are shifted by the solvent molecules and the species [Fe^III(PBMPA)(H₂O)₂]Cl₂ is predominant. The catalase-like activity of the complex was tested in water, and it proved to be active in the hydrogen peroxide dismutation. Kinetics studies were conducted following the initial rates method. The reaction is first order in relation to both the complex and the hydrogen peroxide. Based on the presence of a lag phase that depends on the initial complex concentration, we propose that the active species that shows in situ catalase-like activity, is a binuclear complex.     

Main group metal halide complexes with sterically hindered thioureas part XVIII: The synthesis, characterization, and X-ray crystallographic study of a BiCl3 complex with 1-methyl-2(3H)-imidazolethione

A new bismuth(III) chloride complex with 1-methyl-2(3H)-imidazolethione (meimtH) has been synthesized and characterized via standard methods including solid state ¹³C nuclear magnetic resonance (NMR) and single crystal X-ray diffractometry. The complex, BiCl₃[meimtH]_2.5 · H₂O, crystallizes in a triclinic space group. The complex has two different coordination spheres for bismuth, which are linked together in the solid state via hydrogen bonding. One coordination sphere is distorted octahedral with the ligands in meridional positions, while the other is a dimer consisting of two octahedra sharing a common edge through bridging chlorine atoms. The ligands are cis to each other and trans to the chlorine bridges, while the remaining four chlorine atoms are trans to each other and perpendicular to the chlorine-sulfur plane. There is no strong evidence for a stereoactive lone pair in either coordination sphere.     

Triorganotin(IV) complexes of Schiff base derived from 6-amino-2-mercaptobenzothiazole: Synthesis, characterization and X-ray crystal structures

Nine triorganotin(IV) complexes of the type R₃SnL (L = L1 R = Me 1, Ph 2, PhCH₂3; L = L2 R = Me 4, Ph 5, PhCH₂6; L = L2 R = Me 7, Ph 8, PhCH₂9) have been obtained by reaction of new Schiff base HL1, HL2 or HL3 with triorganotin(IV) chloride in the presence of sodium ethoxide. All the complexes 1-9 were characterized by elemental, IR and NMR spectra analyses. Except for complexes 3, 4, 6, 9, the others were also characterized by X-ray crystallography diffraction analyses, which revealed that complexes 1, 2, 5, 7, 8 were four coordinated and displayed a capped tetrahedron.