A trophic cascade in a macrophyte-based food web at the land–water ecotone

Trophic cascades may purportedly be more common in aquatic than terrestrial food webs, but herbivory on freshwater vascular plants has historically been considered low. Water lilies are an exception, suffering severe grazing damage by leaf beetles. To test whether a central prediction of cascade models—that predator effects propagate downwards to plants—operates in a macrophyte-based food web, we experimentally manipulated predation pressure on a key herbivore of water lilies in the littoral zone of a lake in Michigan, USA. Field experiments comprised combinations of caging treatments to alter the number of predators (larvae of the ladybird beetle Coleomegilla maculata) that hunt the grazers of the macrophytes (larvae of the leaf beetles Galerucella nymphaeae) on the leaves of the water lily Nuphar advena. Predatory larvae of the ladybird beetles significantly reduced grazing damage to water-lily leaves by 35–43%. The predators reduced plant damage chiefly via density-mediated effects, when lower densities of grazers translated to significant declines in plant damage. Plant damage caused by the surviving herbivores was less than predicted from individual grazing rates under predator-free conditions. This suggests that trait-mediated effects may possibly also operate in this cascade. The observed strong effect of predators on a non-adjacent trophic level concurs with an essential component of the trophic cascade model, and the cascade occurred at the ecotone between aquatic and terrestrial habitats: Nuphar is an aquatic macrophyte with emergent and floating leaves, whereas both beetle species are semi-terrestrial and use the dry, emergent and floating leaves of the water lily as habitat. Also, the cascade is underpinned by freshwater macrophytes—a group for which trophic processes have often been underappreciated in the past.     

Early Cambrian food webs on a trophic knife‐edge? A hypothesis and preliminary data from a modern stromatolite‐based ecosystem

Here we use the theory of ecological stoichiometry to propose and provide a preliminary test of a novel hypothesis that the Cambrian 'explosion' may have been triggered by changes in circulating P availability in the biosphere. We exposed living stromatolites from a spring-fed stream in Mexico to a gradient of P enrichment to examine subsequent effects on stromatolite C : P ratio and on the primary grazer, an endemic snail. Consistent with a previously hypothesized stoichiometric 'knife-edge', snail performance was maximal at intermediate P-enrichment, indicating in situ stoichiometric constraints because of high stromatolite C : P ratio along with high sensitivity to excessive P intake. These results are consistent with the idea that stoichiometric constraints may have delayed the evolutionary proliferation of animals in ancient stromatolite-dominated ecosystems and also suggest that high food P content can significantly impair consumers. We propose that ecosystem P availability may have impacted both the expansion and decline of animal taxa in the history of life.     

Up or down in space? Uniting the bottom‐up versus top‐down paradigm and spatial ecology

Why is the World green – what keeps herbivores, and herbivorous insects in particular, from consuming all of their food? When this question was first posed, the relative importance of top‐down and bottom‐up effects was hotly disputed. While modern ecologists may agree that impacts from several different directions will affect local insect densities, the bottom‐up vs top‐down jargon seems to be stuck in a unidimensional world. Here, we argue that the strength of almost every bottom‐up and top‐down force is likely to vary in space, and that in itself, spatial structure invokes new processes which defy classification in the traditional bottom‐up top‐down scheme. To understand the relative importance of different forces keeping herbivore numbers in check, we feel that we need a fresh synthesis between the novel paradigm of spatial ecology and the classical paradigms of top‐down and bottom‐up studies. This synthesis requires a consideration of forces beyond the standard framework of top‐down vs bottom‐up effects, and should be based on comparing the relative strength of such forces at several sites in a spatially explicit framework. Overall, we should switch our focus from whether the relative strength of top‐down and bottom‐up factors vary in space to why there is variation, how much variation there is, and at what spatial scale(s) it occurs.     

Trophic control of mesopredators in terrestrial ecosystems: top‐down or bottom‐up?

It has been argued that widespread extinctions of top predators have changed terrestrial ecosystem structures through mesopredator release, where increased abundances of medium-sized predators have detrimental effects on prey communities. This top-down concept has received much attention within conservation biology, but few studies have demonstrated the phenomenon. The concept has been criticized since alternative explanations involving bottom-up impacts from bioclimatic effects on ecosystem productivity and from anthropogenic habitat change are rarely considered. We analyse the response of a mesopredator (the red fox) to declines in top predators (wolf and Eurasian lynx) and agricultural expansion over 90 years in Sweden, taking bioclimatic effects into account. We show a top-down mesopredator release effect, but ecosystem productivity determined its strength. The impacts of agricultural activity were mediated by their effects on top predator populations. Thus, both top-down and bottom-up processes need to be understood for effective preservation of biodiversity in anthropogenically transformed ecosystems.     

Do prey select for vacant hunting domains to minimize a multi‐predator threat?

Many ecosystems contain sympatric predator species that hunt in different places and times. We tested whether this provides vacant hunting domains, places and times where and when predators are least active, that prey use to minimize threats from multiple predators simultaneously. We measured how northern Yellowstone elk (Cervus elaphus) responded to wolves (Canis lupus) and cougars (Puma concolor), and found that elk selected for areas outside the high‐risk domains of both predators consistent with the vacant domain hypothesis. This enabled elk to avoid one predator without necessarily increasing its exposure to the other. Our results demonstrate how the diel cycle can serve as a key axis of the predator hunting domain that prey exploit to manage predation risk from multiple sources. We argue that a multi‐predator, spatiotemporal framework is vital to understand the causes and consequences of prey spatial response to predation risk in environments with more than one predator.     

Do trophic subsidies affect the outcome of introductions of a non‐native freshwater fish?

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Do monk seals exert top‐down pressure in subphotic ecosystems?

Patterns of subphotic fish assemblages on seamounts in the Northwestern Hawaiian Islands were identified and compared for potential structuring influences, including the bottom-up effects of regional oceanic productivity and top-down predation pressure exerted by visiting monk seals ( Monachus schauinslandi ). Patterns in fish size, density, and biomass were evaluated at the deep extreme (350–500 m) of the seals feeding range to avoid confounding effects of diverse shallow habitats ( e.g. , coral reefs). Fish number and size were used to calculate biomass density of the seamount fish assemblages that were then compared to the independent variables of summit depth, substrate type, relief, oceanic productivity, distance to seal colonies, and seal colony population. Only the variables of distance to seal colony and seal colony population were retained in a multiple regression model that explained 31% of the variance. Despite the presence of obvious regional differences in oceanic productivity, the overall patterns in the subphotic fish assemblages are better explained by the top-down hypothesis of predation pressure from monk seals.     

Do virus‐resistant plants pose a threat to non‐target ecosystems? II. Risk assessment of an Australian pathosystem using multi‐scale field experiments

It has been widely argued that the acquisition of novel disease resistance genes by wild host populations following the release of novel pathogen‐resistant plants into agricultural systems could pose a significant threat to non‐target plant communities. However, predicting the magnitude of ecological release in wild plant populations following the removal of disease remains a major challenge. In this paper we report on the second phase of a tiered risk assessment designed to investigate the role of disease on host growth, survival, fecundity and fitness in a model pathosystem (the pasture species Trifolium repens infected with Clover yellow vein virus, ClYVV) and to assess the level of risk posed to at‐risk native plant communities in southeast Australia by newly developed genetically modified and conventionally bred virus‐resistant T. repens genotypes. Multi‐year field experiments conducted in woodland and grassland environments using host‐pathogen arrays derived from 14 ClYVV isolates and 21 T. repens genotypes indicate that viral infection reduces fecundity, growth and survival of wild T. repens plants but that the severity of these effects depends on host tolerance to infection, isolate aggressiveness and specific spatial and temporal environmental conditions. Demographic modelling showed that by reducing host survival and growth, ClYVV also limits the intrinsic population growth rate and niche size of wild T. repens populations. Given the significant fitness cost associated with viral infection we conclude that virus‐resistant T. repens genotypes may pose a threat to some high conservation‐value non‐target ecosystems in SE Australia. We also argue that long‐term, multi‐tiered experiments conducted in a range of controlled and non‐controlled environments are necessary to detect and accurately quantify risks associated with the release of disease‐resistant plants in general.     

Is optimal foraging a realistic expectation in orb‐web spiders?

Abstract 1. Explanations for web relocation invoking optimal foraging require reliable differentiation between individual sites and overall habitat quality. We characterised natural conditions of resource variability over 20 days in artificial webs of the orb‐web spider Gasteracantha fornicata to examine this requirement. 2. Variability in catch success was high. Day‐to‐day catch success in 90% (18/20) catch sites fitted negative binomial distributions, whereas 10% fitted Poisson distributions. Considered across trap sites (overall habitat), variance in catch success increased proportionally faster than the mean (i.e. Taylor’s Power Law, variance = 0.54mean^1.764). 3. We compared the confidence intervals for the expected cumulative catch in randomly drawn sequential samples from a frequency distribution representing the overall habitat (based on the parameters for Taylor’s power law) and the frequency distribution of expected cumulative catch within each individual catch site [via randomisation based on the mean and negative binomial exponent (k)]. 4. In all cases and across all sample sizes, median values for the power to differentiate habitat and catch sites never exceeded 0.2, suggesting that principles involved in optimal foraging, if operating, must be accompanied by a very high degree of uncertainty. 5. Under conditions of high resource variability, many days must be spent in a single catch site if movement decisions are based on an ability to differentiate current catch site from overall habitat. Empirical evidence suggests this is never met. This may explain why proximal mechanisms that illicit quickly resolved behavioural responses have been more successful in describing web relocation patterns than those associated with optimal foraging.     

Flexibility in a changing arctic food web: Can rough‐legged buzzards cope with changing small rodent communities?

Indirect effects of climate change are often mediated by trophic interactions and consequences for individual species depend on how they are tied into the local food web. Here we show how the response of demographic rates of an arctic bird of prey to fluctuations in small rodent abundance changed when small rodent community composition and dynamics changed, possibly under the effect of climate warming. We observed the breeding biology of rough‐legged buzzards (Buteo lagopus) at the Erkuta Tundra Monitoring Site in southern Yamal, low arctic Russia, for 19 years (1999–2017). At the same time, data on small rodent abundance were collected and information on buzzard diet was obtained from pellet dissection. The small rodent community experienced a shift from high‐amplitude cycles to dampened fluctuations paralleled with a change in species composition toward less lemmings and more voles. Buzzards clearly preferred lemmings as prey. Breeding density of buzzards was positively related to small rodent abundance, but the shift in small rodent community lead to lower numbers relative to small rodent abundance. At the same time, after the change in small rodent community, the average number of fledglings was higher relative to small rodent abundance than earlier. These results suggest that the buzzard population adapted to a certain degree to the changes in the major resource, although at the same time density declined. The documented flexibility in the short‐term response of demographic rates to changes in structure and dynamics of key food web components make it difficult to predict how complex food webs will be transformed in a warmer Arctic. The degree of plasticity of functional responses is indeed likely to vary between species and between regions, depending also on the local food web context.     

Does a multi‐plant diet benefit a polyphagous herbivore? A case study with Bemisia tabaci

Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) is a highly polyphagous herbivore. This research was conducted to compare the development of B. tabaci reared in a multi‐plant treatment (polyculture) with those in single‐plant treatments (monocultures). Adult B. tabaci females fed on a mixture of tomato, cabbage, cotton, cucumber, and kidney bean survived longer and laid more eggs than those fed exclusively on one of these plant species. Egg numbers per plant laid in the polyculture treatment were positively correlated with those laid on the same plant species in the monoculture treatments, and egg numbers per plant laid on tomato, cotton, and cucumber in the polyculture were significantly higher than those laid on the same plants in the monocultures. Concentrations of total protein and trehalose in B. tabaci were not significantly different after 7 days of feeding in the respective treatments, but activities of superoxide dismutases (SOD) and alkaline phosphatase (AKP) of B. tabaci in polyculture were lower than those in monoculture. Conversely, activities of trehalase, sucrase, and amylase in B. tabaci kept in polyculture were higher than those of insects from the monoculture. In each of the monoculture treatments, there was a negative correlation between AKP in B. tabaci and oviposition, and also between AKP and amylase. SOD and sucrase activities in B. tabaci were positively correlated with polyphenol oxidase (PPO) and peroxidase (POD) activities in plants. In the plants damaged by whiteflies in the polyculture treatment, activities of SOD in cucumber, PPO in cotton and kidney bean, and POD in tomato and cucumber were lower than those in the monoculture treatments, whereas SOD in cabbage and catalase (CAT) in tomato in the polyculture treatment were higher than those in the monoculture treatments.     

Proteome, transcriptome and genome: top down or bottom up analysis?

Biological systems are comprised of protein components found at a wide variety of abundances from millions of molecules of a single species per cell to less than one copy per cell. Because of this wide range of concentrations, measurement or a full accounting of each system is presently unavailable. Conventional separation and analytical methods (two-dimensional gel electrophoresis and mass spectrometry) allow identification and quantitation of many of the most abundant gene products (top down methods); and the majority of gene products, which are found at low abundance, can be neither identified nor measured in complex mixtures at present. The gene products that are found at low levels can be characterized and their properties analyzed by preparing ordered gene libraries of limited complexity from mRNA. When such preparations are expressed in cell free systems and analyzed by two-dimensional gel electrophoresis, the features of the gene products are available for analysis. This 'bottom up' approach allows identification of gene product properties so that analytical procedures can be devised and applied to complex mixtures.     

Do lizard communities partition the trophic niche? A worldwide meta‐analysis using null models

Lizards have been widely used as model organisms in community ecology over the past 30 years. I have reviewed more than 50 studies from the literature on the community ecology of lizards worldwide, with a focus on studies from 1990–2007. I determined if there is support for the hypotheses that many lizard communities 1) are non‐randomly organized along the trophic niche dimension, and 2) partition the available food resource to minimize interspecific competition. I used data on number of prey items and percentage of prey volume, to calculate dietary overlap among species. I compared true datasets to randomly generate new datasets produced by 3×10⁴ Monte Carlo permutations using two algorithms (RA2 and RA3). The great majority (more than 80%) of the communities were randomly organized along the trophic niche dimension using RA2 or RA3; the frequency of occurrence of detecting a non‐random structure in lizard community dietary studies did not differ significantly between datasets based on either number of prey items or prey volume. Thus, lizard communities usually do not partition the trophic niche axis. Concerning the number of prey items, logistic regression models showed that the presence of a structure in the dataset did not depend on number of species, method employed to obtain dietary data, matrix size, or location (continent), but instead significantly depended on whether a community was tropical. Concerning prey volume, presence of a structure in the dataset also did not depend on number of species, method employed to obtain dietary data, and tropical vs non‐tropical origin, but was marginally dependent on continent (South America was favoured for identifying a structure in the dataset) and matrix size. In general, a structure in the dataset was more often uncovered by using RA2 than RA3. Overall, I conclude that 1) lizard communities are unlikely to partition available food resources, and 2) as the method for identifying dietary items does not allow for accurate prey identification (at least at the genus level), there is a risk of obtaining false null results about community structure. This is because structure along the trophic niche axis is genuinely rare in lizards and also because inappropriate methods may erroneously lead to this conclusion. Therefore, conclusions from studies utilizing stomach dissection as a source of diet data (still common in the literature) should be cautiously considered for ethical reasons and because it is difficult to find any difference between stomach‐dissection and fecal‐pellet data when assessing the presence of a structure in datasets. My data also showed there are minor differences in the probability of detecting a structure in datasets using prey item number or prey volume data for lizards. The biases, both statistical and biological, associated with this meta‐analysis are discussed.     

Is cancer a disease set up by cellular stress responses?

For several decades, the somatic mutation theory (SMT) has been the dominant paradigm on cancer research, leading to the textbook notion that cancer is fundamentally a genetic disease. However, recent discoveries indicate that mutations, including “oncogenic” ones, are widespread in normal somatic cells, suggesting that mutations may be necessary but not sufficient for cancer to develop. Indeed, a fundamental but as yet unanswered question is whether or not the first step in oncogenesis corresponds to a mutational event. On the other hand, for some time, it has been acknowledged the important role in cancer progression of molecular processes that participate in buffering cellular stress. However, their role is considered secondary or complementary to that of putative oncogenic mutations. Here we present and discuss evidence that cancer may have its origin in epigenetic processes associated with cellular adaptation to stressful conditions, and so it could be a direct consequence of stress-buffering mechanisms that allow cells with aberrant phenotypes (not necessarily associated with genetic mutations) to survive and propagate within the organism. We put forward the hypothesis that there would be an inverse correlation between the activation threshold of the cellular stress responses (CSRs) and the risk of cancer, so that species or individuals with low-threshold CSRs will display a higher incidence or risk of cancer.     

Do ambush predators prefer rewarding or non‐rewarding orchid inflorescences?

Previous research has shown that the presence of a reward on average doubles reproductive success in orchids by correspondingly increasing the frequency of pollinator visitations. We examined whether such reward-induced increases have a downstream effect on the behaviour of ambush predators concealed in orchid inflorescences, extending observations begun at Downe by Charles Darwin. Specifically, we studied three orchid-rich sites in southern England, in order to compare the occurrence of crab spiders on three coexisting species of terrestrial orchids: the nectariferous Gymnadenia conopsea versus the nectar-less Dactylorhiza fuchsii and Anacamptis pyramidalis . No significant difference was observed between rewarding and non-rewarding inflorescences at Risborough, whereas at Aston Clinton the nectar-less species supported significantly more crab spiders, albeit mainly in relatively short grass. Comparison of the two non-rewarding species present at Downe approximated a significant preference by the spiders for Anacamptis , which more closely resembles the rewarding Gymnadenia . The presence of a floral reward does not result in a higher frequency of crab spiders. We speculate that concealment quality of the inflorescence, the nature of the dominant pollinator(s), and/or ease of movement of spiders between inflorescences may be more important than frequency of visits by potential prey, particularly when no other form of concealment is readily available.  © 2007 The Linnean Society of London, Biological Journal of the Linnean Society , 2007, 92 , 763–771.