Cretaceous and Paleogene Bourgueticrinina (Echinodermata,Crinoidea) of the USSR

The theca and the columnals of twenty-two lateCretaceous species of the genus Bourgueticrinus (including two new species), of one species of the genus Democrinus, of four species of the genus Conocrinus (including one new species) and of one species of the genus Paleobathycrinus known from USSR are figured and shortly described. Biometric reconstructions of stems for B. aequalis, B. bellus, B. danicus, B. fischeri and C. tauricus nov. sp. are given. A new index is used to suggest the relative flexibility of stem. Decrease in dimension and flexibility of the arms in several species take place simultaneously with an increase of stem flexibility. This fact seems to be closely related to environmental changes.     

Historical biogeography and ecology of a Continental Antarctic mite genus, Maudheimia (Acari, Oribatida): evidence for a Gondwanan origin and Pliocene-Pleistocene speciation

Of the eight genera (30 species) of extant Acari in Continental (= East) Antarctica, the genus Maudheimia Dalenius & Wilson, 1958 (Oribatida; Maudheimiidae) is uniquely endemic. A Gondwanan origin is proposed for the genus based on antiquity, inferred from endemism, a widespread distribution throughout Continental Antarctica and a limited dispersal capacity. Adaptation for a high montane epilithic existence, a necessity for the origination and long-term persistence in Antarctica, is inferred from the life history, physiology and ecology of Maudheimia. Phylogenetic analysis placed all four Maudheimia species in a single (generic) clade with the following structure (M. pelronia Wallwork, 1962 (M. tanngardenensis Coctzee, 1997 (M. manhalli Coetzee, 1997 (M. wilsoni Dalenius & Wilson, 1958)))). Geographical distributions of the Maudheimia species, in relation to their phylogenetic relationships, support the hypothesis that post-Gondwanan speciation occurred as a consequence of isolation during glaciation of Antarctica.     

The paleobiology of two adult skeletons from Baousso da Torre (Bausu da Ture) (Liguria,Italy): Implications for Gravettian lifestyle

This article presents the main skeletal characteristics of the two largely unpublished Gravettian adult skeletons from Baousso da Torre (Liguria, Italy). BT1 and BT2 were two adult tall males, who died aged respectively between 20 and 50 years, and between 20 and 30 years. Their body proportions fall within the range of variation known for the middle Upper Paleolithic, and their skeletal remains are characterized by considerable osteometric values, which fall consistently in the upper part of the Upper Paleolithic male sample variation. They show a high degree of upper limb lateralization, implying that they were likely involved in strenuous and/or repetitive unimanual tasks. They also exhibit very robust lower limbs, likely related to repeated long-distance travels in mountainous terrains. These results are in total agreement with previous hypotheses on Late Pleistocene population behavioral patterns.     

Phylogenetic distance of Thelohania butleri Johnston, Vernick, and Sprague, 1978 (Microsporidia; Thelohaniidae), a parasite of the smooth pink shrimp Pandalus jordani, from its congeners suggests need for major revision of the genus Thelohania Henneguy, 1892

Thelohania butleri, a microsporidian that causes mortality and commercial losses in the smooth pink shrimp Pandalus jordani, is of taxonomic interest as a species resembling the poorly studied type species, Thelohania giardi, of the large, polyphyletic genus Thelohania. We examined the ultrastructure of T. butleri to confirm its identity and reconstructed phylogenies using ribosomal DNA to find the relationship of T. butleri with other Thelohania species in crayfish and ants. Light and transmission electron microscopy from specimens collected from the type locality, the Pacific coast of Canada, confirmed the identity and demonstrated a development similar to that of T. giardi, involving a series of binary fissions without formation of a plasmodium. Phylogenetic analyses consistently showed T. butleri to be distantly related to other Thelohania species, and closely related to species from marine decapods within a larger fish-parasitic clade. Together, features such as host group and habitat, developmental morphology, and phylogeny suggest T. butleri may be a closer relative to T. giardi than any other Thelohania species represented by DNA data so far, and thus imply species from crayfish and ants may not belong in this genus. Results also confirm that genus Thelohania and family Thelohanidae are in need of revision.     

Growth and cellular fatty-acid composition of a sulphate-reducing bacterium, Desulfatibacillum aliphaticivorans strain CV2803T, grown on n-alkenes

The anaerobic degradation of n-alkenes by a sulphate-reducing bacterium Desulfatibacillum aliphaticivorans strain CV2803T was investigated. Results suggest that enzymes required for alkene degradation are inducible. Moreover, total cellular fatty acids of strain CV2803T were predominantly C-odd when the strain was grown on C-odd substrates and C-even when grown on C-even substrates. In addition to classical bacterial fatty acids, unusual 4-Me-17:1delta11 and 4-Me-18:1delta11 fatty acids and their saturated homologues were detected when strain CV2803T was grown on 1-pentadecene and 1-hexadecene, respectively. These methyl-branched monounsaturated fatty acids could constitute specific metabolites of n-alkene degradation by sulphate-reducing bacteria.     

Lasting through the ice age: The role of the proglacial refugia in the maintenance of genetic diversity,population growth,and high dispersal rate in a widespread freshwater crustacean

1. The severe climatic changes during the Pleistocene ice ages have shaped the genetic structure and distribution of biota in Europe. We aimed to reveal in detail the genetic diversity, geographical population structure, historical and present demography, migration patterns, and the presence of possible glacial refugia within the nominative subspecies Asellus aquaticus aquaticus.
2. We analysed DNA sequences of the mitochondrial cytochrome c oxidase subunit I gene and nuclear noncoding internal transcribed spacer II region, from populations inhabiting post-glacial Europe (from the British Isles and Scandinavia to the northern Mediterranean and Black Sea coasts).
3. The origin of the taxon, including establishment in the Dinaric Western Balkans, dates to the Middle/Late Pliocene, but most of its genetic diversity emerged during the Middle/Late Pleistocene before the Last Glacial Maximum.
4. Despite the general absence of spatial genetic structure with population growth, we discovered two different phylogeographic stories across 11 clusters revealed by a coalescent approach. Firstly, the periglacial cluster group—spatially restricted mainly to the northern Balkans, Pannonian Basin, and Pontic Region—is older and more divergent. It apparently retained a relatively stable population size during the glacial-interglacial cycles. Conversely, the proglacial cluster group—widely distributed in areas close to the glacier margins (north of the Alps, Sudetes, Carpathians) and in the Pannonian Basin—is younger and composed of closely related individuals. It originated in Pleistocene and lasted continuously through the Last Glacial Maximum in numerous high latitude refugia. This was probably due to the vast network of proglacial lakes and rivers, which played a crucial role in the maintenance of genetic diversity, population growth, and high dispersal rate.
5. The evolutionary history of A. a. aquaticus reveals unexpected patterns and is an important lesson when making predictions for other aquatic taxa. Our results suggest that we should stop perceiving the proglacial habitats as lifeless ice desert.

     

Jsowerbya, new genus of Muricidae (Mollusca: Gastropoda) from the Eocene of the Paris (France) and Hampshire (England) basins with a phylogenetic assessment of its Ocenebrine versus Ergalataxine affinities

Jsowerbya, nov. gen. (Gastropoda: Muricidae) includes three species from the Eocene of the Paris and Hampshire basins. It increases the number of extinct muricid genera, which curiously represent a very small fraction of the described genera. The species of Jsowerbya, often mistaken for the muricopsine genus Muricopsis, possess a unique combination of characters shared with the subfamilies Ocenebrinae and Ergalataxinae. A cladistic analysis, based on structural homologies of the spiral sculpture, however, suggests that Jsowerbya is closely related to the Ocenebrinae. Thus, Jsowerbya is here regarded as one the most basal Ocenebrinae.     

Description of a new genus and species of zoarcid fish, <Emphasis Type="Italic">Bellingshausenia olasoi</Emphasis>, from the Bellingshausen Sea (Southern Ocean)

A new genus and species of zoarcid fish, Bellingshausenia olasoi, is described on the basis of five specimens collected from the Bellingshausen Sea, Southern Ocean, at depths of 602–615 m. Bellingshausenia is a lycodine that can be distinguished from all other zoarcid genera by the following combination of characters: seven branchiostegal rays, scapular foramen open, cranium narrowed, smooth ceratohyal-epihyal articulation, palatal arch well developed, supratemporal commissure and occipital pores absent, intercalar reduced and displaced backward and parasphenoid wing high. The relationships of the new genus are discussed.     

Biochemical composition of crustacean zooplankton and their grazing on phytoplankton and ciliated protozoans in a recently founded reservoir (Sahela, Morocco

In order to assess the impact of crustacean zooplankton on phytoplankton and protozoan ciliates in the Sahela reservoir under semi-arid climate, we conducted experiments during the period from July to December 1999 at the deepest point in the lake (15 m). Samplings and measurements were carried out in diffusion chambers submerged in situ over a period of 7 h without (control chambers) and with (experimental chambers) crustacean zooplankton. During these experiments, counts were conducted on phytoplankton and ciliates to determine the abundance and the mortality of these organisms due to zooplankton in each diffusion chambers at t = 0 and t = 7 h of incubation. The study showed that the growth rates of phytoplankton and ciliates populations varied between 0.02 and 0.05 h-1 and from 0.01 to 0.07 h-1, respectively. The mortality caused by zooplankton grazing fluctuated from 0.07 to 0.2 h-1 of phytoplankton and from 0.01 to 0.2 h-1 of ciliates. These mortalities were significantly and positively correlated with the growth rates (r = 0.8; p < 0.02; n = 9). Moreover, the heavy predation by the crustacean zooplankton was exerted on small-sized phytoplankton and ciliates and we demonstrated the relationships between protozoans and zooplankton for the transfer of matter and energy in aquatic food webs. Furthermore, the crustacean zooplankton metabolism was different, whether zooplankton was present in diffusion chambers or in the lake.     

European cave shrimp species (Decapoda: Caridea: Atyidae), redefined after a phylogenetic study; redefinition of some taxa,a new genus and four new Troglocaris species

Endemic atyids of southern Europe have been ascribed to Dugastella, and to subterranean Typhlatya and Troglocaris: Dugastella is epigean, and Typhlatya and Troglocaris are subterranean. An extensive collection from all centres of distribution in southern Europe (excepting the Caucasus) was morphologically examined. A taxonomic redefinition of the group, at different levels, is based on recently published and newly generated molecular phylogeny, whereas newly established taxa have also been morphologically defined. The accordance between the phylogenetic tree and the geographical distributions suggested that a re‐evaluation of some traditionally used morphological characters should generate the most parsimonious solution: this enabled a novel taxonomic division. Gallocaris gen. nov. is erected for the French Troglocaris inermis Fage, 1937, which is more closely related to the epigean Dugastella valentina (Ferrer Galdiano, 1924) than to its supposed congeners. Both western Mediterranean Typhlatya species are closely related to their Caribbean congeners. All other European cave shrimps constitute a monophylum, Troglocaris, which is divisible into subgenera (already with available names): the holo‐Dinaric Troglocaris (Troglocaris) Dormitzer, 1853, south‐eastern mero‐Dinaric Troglocaris (Troglocaridella) Babi?, 1922, and Troglocaris (Spelaeocaris) Matja?i?, 1956, and the Caucasian Troglocaris (Xiphocaridinella) Sadovsky, 1930. Four new species are described: Troglocaris (Troglocaris) bosnica sp. nov. , Troglocaris (Spelaeocaris) prasence sp. nov. , Troglocaris (Spelaeocaris) kapelana sp. nov. , and Troglocaris (Spelaeocaris) neglecta sp. nov. The distribution of all established species is shown, and the value of the morphological characters is discussed. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 786–818.     

Unification of the genera Nonlabens, Persicivirga, Sandarakinotalea and Stenothermobacter into a single emended genus, Nonlabens, and description of Nonlabens agnitus sp. nov

Phylogenetic analyses based on 16S rRNA gene sequences showed that a bacterial isolate, designated JC2678(T), represents a distinct phyletic line within the suprageneric monophyletic clade containing the genera Nonlabens, Persicivirga, Stenothermobacter and Sandarakinotalea. The polyphasic data presented in this study demonstrated that the members belonging to the Nonlabens-like clade overall constitute a single genus. Therefore, it is proposed to transfer the members of genera Persicivirga O'Sullivan et al. 2006, Stenothermobacter Lau et al. 2006 and Sandarakinotalea Khan et al. 2006 to the genus Nonlabens Lau et al. 2005. Thus, P. dokdonensis (Yoon et al. 2006) Nedashkovskaya et al. 2009, P. ulvanivorans Barbeyron et al. 2010, P. xylanidelens O'Sullivan et al. 2006, Sandarakinotalea sediminis Khan et al. 2006 and Stenothermobacter spongiae Lau et al. 2006 should be transferred to Nonlabens dokdonensis comb. nov., Nonlabens ulvanivorans comb. nov., Nonlabens xylanidelens comb. nov., Nonlabens sediminis comb. nov. and Nonlabens spongiae comb. nov., respectively. In addition, strain JC2678(T) (=KACC 14155(T)=JCM 17109(T)) is proposed to constitute a novel species belonging to the genus Nonlabens with the name of Nonlabens agnitus sp. nov.     

The cave population of Chaerilus Simon, 1877 from Palawan,Philippines, and description of a new species (Scorpiones: Chaerilidae)

The study of an important collection of scorpions, belonging to the genus Chaerilus, recently collected from a cave in the Palawan Island, Philippines, allows the clarification of the identity of this population, often misidentified with Chaerilus chapmani Vachon & Lourenço, 1985 known from caves in the Gunong Mulu National Park in Sarawak (Borneo). Chaerilus agnellivanniorum sp. n. is described from the Puerto Princesa Underground River Cave in Palawan Island based on 14 specimens, males, females, and juveniles. The new species is totally distinct morphologically from Chaerilus chapmani, a true troglobitic species. Chaerilus agnellivanniorum sp. n. may also be a true troglobitic element, but with a less marked degree of regression for several characters. Some comments on the ecology of the new species and on regional biogeography of Borneo and Palawan islands are also proposed.     

Evolutionary relationships of a new genus and three new species of Omomyid primates (Willwood Formation, Lower Eocene, Bighorn Basin, Wyoming)

Studies of new finds of omomyid primates from the lower Eocene Willwood Formation of northwest Wyoming reveal the presence of a new genus and two new species of anaptomorphines and a new species of omomyine. All were apparently short-lived immigrants into the Bighorn Basin. The new genus and speciesTatmanius szalayi is typified by a diminutive single-rooted p3 and a bilobed-rooted p4 with a crown smaller than ml. These traits were probably derived fromPseudotetonius and parallel similar conditions inTrogolemur andNannopithex. The new speciesArapahovius advena is the first occurrence ofArapahovius outside the Washakie Basin, where it appears to have also been a vagrant species.Steinius annectens, sp. nov., is larger than the olderSteinius vespertinus and strengthens the alliance between this genus and BridgerianOmomys carteri, although which species ofSteinius is closer toOmomys is not yet clear. The available evidence suggests a derivation ofOmomys (Omomyini) fromSteinius and all Washakiini from the anaptomorphineTeilhardina, which would indicate that Omomyinae were at least diphyletic. Preliminary evidence suggests that the geographic distributions of at least some Willwood omomyids correlate with paleosol distributions.     

Molecular cloning,characterization and expression of a gene encoding phosphoketolase from Termitomyces clypeatus

A phosphoketolase (pk) gene from the fungus Termitomyces clypeatus (TC) was cloned and partially characterized. Oligonucleotide primers specific for the phosphoketolase gene (pk) were designed from the regions of homologies found in the primary structure of the enzyme from other fungal sources related to TC, using multiple sequence alignment technique. The cDNA of partial lengths were amplified, cloned and sequenced in three parts by 3′ and 5′ RACE and RT-PCR using these oligonucleotide primers. The full length ds cDNA was constructed next by joining these three partial cDNA sequences having appropriate overlapping regions using Overlap Extension PCR technique. The constructed full length cDNA exhibited an open reading frame of 2487 bases and 5′ and 3′ UTRs. The deduced amino acid sequence, which is of 828 amino acids, when analyzed with NCBI BLAST, showed high similarities with the phosphoketolase enzyme (Pk) superfamily with expected domains. The part of the TC genomic DNA comprising of the pk gene was also amplified, cloned and sequenced and was found to contain two introns of 68 and 74 bases that interrupt the pk reading frame. The coding region of pk cDNA was subcloned in pKM260 expression vector in correct frame and the protein was expressed in Escherichia coli BL21 (DE3) transformed with this recombinant expression plasmid. The recombinant protein purified by His-tag affinity chromatography indicated the presence of a protein of the expected size. In vivo expression studies of the gene in presence of different carbon sources indicated synthesis of Pk specific mRNA, as expected. Phylogenetic studies revealed a common ancestry of the fungal and bacterial Pk. The TC is known to secrete several industrially important enzymes involved in carbohydrate metabolism. However, the presence of Pk, a key enzyme in pentose metabolism, has not been demonstrated conclusively in this organism. Cloning, sequencing and expression study of this gene establishes the functioning of this gene in T. clypeatus. The Pk from TC is a new source for commercial exploitation.     

Paralytic shellfish toxins in zooplankton, mussels, lobsters and caged Atlantic salmon, Salmo salar, during a bloom of Alexandrium fundyense off Grand Manan Island, in the Bay of Fundy

Substantial mortalities of Atlantic salmon (Salmo salar) at two aquaculture sites in Long Island Sound, off Grand Manan Island, Bay of Fundy (BoF) (New Brunswick, Canada) in September 2003, were associated with a bloom of Alexandrium fundyense (>3 × 10⁵ cells L⁻¹), a dinoflagellate alga that produces toxins which cause paralytic shellfish poisoning (PSP). Cells of A. fundyense collected from surface waters while fish were dying had total paralytic shellfish (PS) toxin concentrations of 70.6 pg STX equiv. (saxitoxin equivalents) cell⁻¹ and PS toxin profiles rich in carbamate toxins (78.2%). The zooplankton sampled contained PS toxins (63.1 pg STX equiv. g⁻¹ wet wt) and the toxin profile matched that of A. fundyense cells.Mean PS toxin levels were low (<4 μg STX equiv. 100 g⁻¹ wet wt) in stomach, gill and muscle tissues of moribund salmon, suggesting that PS toxins are very lethal to salmon.The PS toxin concentrations in blue mussels (Mytilus edulis) growing on the salmon cages (37; 526 μg STX equiv. 100 g⁻¹ wet wt) were the highest recorded to date from this region. Their PS toxin profiles showed enhanced carbamate contents (85.5%) compared with that found in A. fundyense. Blue mussels collected from an adjacent Canadian Food Inspection Agency (CFIA) monitoring site in Grand Manan had PS toxin concentrations of 4214 and 150 μg STX equiv. 100 g⁻¹ wet wt in late September and December, respectively, well above the regulatory limit (RL), and horse mussels (Modiolus modiolus) collected in late September had PS toxin concentrations of 2357 μg STX equiv. 100 g⁻¹ wet wt. Detoxification under laboratory conditions suggested that blue mussels may require up to 19 weeks for elimination below RL when they accumulate these high concentrations of PS toxins. This depuration period may be shorter in the field.PS toxin levels above RL were detected in hepatopancreatic tissues of lobster (Homarus americanus), with lower levels (<16 μg STX equiv. 100 g⁻¹ wet wt) in tail muscle and gills.These results illustrate the movement of PS toxins through the marine food chain following an A. fundyense bloom in the BoF, and support earlier studies suggesting that kills from the region of zooplanktivorous fish, such as herring (Clupea harengus harengus), can be attributed to blooms of A. fundyense. This is the first reported incident of PSP associated with mortalities of caged Atlantic salmon in the BoF. Analyses of muscle tissues and viscera from the affected salmon indicated that any portion would not be a health hazard if consumed.     

Biogeography and evolution of a widespread Central American lizard species complex: Norops humilis, (Squamata: Dactyloidae)

Background

Caribbean anole lizards (Dactyloidae) have frequently been used as models to study questions regarding biogeography and adaptive radiations, but the evolutionary history of Central American anoles (particularly those of the genus Norops) has not been well studied. Previous work has hypothesized a north-to-south dispersal pattern of Central American Norops, but no studies have examined dispersal within any Norops lineages. Here we test two major hypotheses for the dispersal of the N. humilis/quaggulus complex (defined herein, forming a subset within Savage and Guyer’s N. humilis group).

Results

Specimens of the N. humilis group were collected in Central America, from eastern Mexico to the Canal Zone of Panama. Major nodes were dated for comparison to the geologic history of Central America, and ancestral ranges were estimated for the N. humilis/quaggulus complex to test hypothesized dispersal patterns. These lineages displayed a northward dispersal pattern. We also demonstrate that the N. humilis/quaggulus complex consists of a series of highly differentiated mitochondrial lineages, with more conserved nuclear evolution. The paraphyly of the N. humilis species group is confirmed. A spatial analysis of molecular variance suggests that current populations are genetically distinct from one another, with limited mitochondrial gene flow occurring among sites.

Conclusions

The observed south-to-north colonization route within the Norops humilis/quaggulus complex represents the first evidence of a Norops lineage colonizing in a south-to-north pattern, (opposite to the previously held hypothesis for mainland Norops). One previously described taxon (N. quaggulus) was nested within N. humilis, demonstrating the paraphyly of this species; while our analyses also reject the monophyly of the Norops humilis species group (sensu Savage and Guyer), with N. tropidonotus, N. uniformis, and N. marsupialis being distantly related to/highly divergent from the N. humilis/quaggulus complex. Our work sheds light on mainland anole biogeography and past dispersal events, providing a pattern to test against other groups of mainland anoles.

Electronic supplementary material

The online version of this article (doi:10.1186/s12862-015-0391-4) contains supplementary material, which is available to authorized users.