人工与天然云杉林土壤真菌群落多样性及菌群网络关系特征

土壤真菌群落多样性和菌群关系是维持生态系统的多样性及稳定性的关键.本文以粗枝云杉人工林和天然林为研究对象,利用高通量测序技术和生物信息学分析方法,研究了云杉根际和非根际土壤真菌群落组成、多样性及菌群网络关系.结果 表明:从群落组成上看,人工林中相对丰度最高的科是丝盖伞科,而天然林中是蜡壳耳科,两处林型下占比最高的属均为...     

Green algae in spruce forests in the north-east of European Russia

The green algal communities in podzolic soils under coniferous forest in N.E. European Russia were studied in areas that were subjected to different technogenic pollution intensities. Sixty-five green algal species belonging to 4 classes, 12 orders, 20 families and 27 genera were recorded. The algal communities in the investigated soils of the different type spruce phytocoenoses included from 15 to 38 taxa on one site. Indicator species were identified for background spruce forests (Chalmydomonas gelatinosa, Tetracystis aggregata, T. dissociata, Pseudopleurococcus botryoides, Myrmecia bisecta) and for aerotechnogenically polluted spruce forests (Actinochloris sphaerica). The results may be used for the monitoring of the ecological state of biota in soils under boreal forests of protected areas and spruce forests exposed to intense aerial technogenic pollution. Presented at the International Symposium Biology and Taxonomy of Green Algae V, Smolenice, June 26–29, 2007, Slovakia.     

Distribution of soil-inhabiting testate amoebae along a mountain slope (Baikal Lake region, Khamar-Daban ridge, Cherskii peak)

The specific composition and distribution of soil-inhabiting testate amoebae along the Cherskii peak slope (Khamar-Daban mountain ridge, Lake Baikal region) were studied within the altitude range from 1000 to 1570 m above sea level according to the changes in biogeocenoses from birch-aspen to cedar-fir forests to cedar-fir-bush forest-tundra. One-hundred-four taxa were identified. The most common species are ubiquits with a wide geographical distribution: Trinema lineare, Euglypha levis, Euglypha rotunda, Trinema enchelys, Phryganella acropodia, Tracheleuglypha dentata, Assulina muscorum, Trinema complanatum, and Centropyxis aerophila. The species richness varies from 12 to 40 species per sample, and the abundance varies from 500 to 120000 ind. per gram of absolutely dry soil. The spatial heterogeneity of the specific composition grows with altitude, and the community composition changes. The absence of a common pattern in the cenotic changes in the communities of testate amoebae in Western Europe and the Lake Baikal region is discussed.     

Edaphic heterogeneity and the evolutionary trajectory of Amazonian plant communities

We investigated how the phylogenetic structure of Amazonian plant communities varies along an edaphic gradient within the non‐inundated forests. Forty localities were sampled on three terrain types representing two kinds of soil: clayey soils of a high base cation concentration derived from the Solimões formation, and loamy soils with lower base cation concentration derived from the Içá formation and alluvial terraces. Phylogenetic community metrics were calculated for each locality for ferns and palms both with ferns as one group and for each of three fern clades with a crown group age comparable to that of palms. Palm and fern communities showed significant and contrasting phylogenetic signals along the soil gradient. Fern species richness increased but standard effect size of mean pairwise distance (SES.MPD) and variation of pairwise distances (VPD) decreased with increasing soil base cation concentration. In contrast, palm communities were more species rich on less cation‐rich soils and their SES.MPD increased with soil base cation concentration. Species turnover between the communities reflected the soil gradient slightly better when based on species occurrences than when phylogenetic distances between the species were considered. Each of the three fern subclades behaved differently from each other and from the entire fern clade. The fern clade whose phylogenetic patterns were most similar to those of palms also resembled palms in being most species‐rich on cation‐poor soils. The phylogenetic structuring of local plant communities varies along a soil base cation concentration gradient within non‐inundated Amazonian rain forests. Lineages can show either similar or different phylogenetic community structure patterns and evolutionary trajectories, and we suggest this to be linked to their environmental adaptations. Consequently, geological heterogeneity can be expected to translate into a potentially highly diverse set of evolutionarily distinct community assembly pathways in Amazonia and elsewhere.     

The role of the floodplain gradient in structuring of testate amoebae communities in the Ilych River

Forty-two testate amoebae taxa were identified in alluvial soils of floodplain islands in the Ilych River. Among the pedo- and eurybionts, there were aquatic rhizopods. Along the floodplain transect (willow meadow ?? deciduous forest ?? coniferous forest), the testate amoebae community changed directly. There are spatially homogeneous (low beta-diversity) testacean communities but species rich on the local level (high alpha-diversity) within forests. Within willows and meadows, communities are characterized by low alpha-diversity and high heterogeneity that leads to high gamma-diversity.     

AN ECOLOGICAL COMPARISON OF UPLAND DECIDUOUS AND EVERGREEN FORESTS OF CENTRAL TEXAS

Scrub evergreen forests cover most of the cedar breaks region of the Edwards Plateau of central Texas; however, limited strips of deciduous forests are found on north-facing slopes just below the limestone caprock. Dominant species occurring in the deciduous forests in descending order of importance include Quercus texana, Q. glaucoides, Juniperus ashei, Diospyros texana, Prunus serotina, Aesculus pavia, Juglans nigra, and Fraxinus texensis. Nineteen woody species were found in the deciduous forests. Forty-eight percent of the species were exclusive to the deciduous forest community. The deciduous forests had a statistically greater number of species/stand and a higher density. The deciduous species found in the strip forests had combined relative density, dominance and importance values of 59, 93 and 72%, respectively. Dominants in the evergreen forest were J. ashei and D. texana, which had relative density, dominance, and importance values totaling 90, 97 and 93%, respectively. Total dominance was the same for both communities; however, J. ashei dominance was 20 times higher in the evergreen forests. Soils of the deciduous forests were significantly deeper and rockier. Also, these soils had higher organic contents and water retention capacities. The potential field capacity (PFC) was 3.47 times higher for the deciduous forest soils resulting in a 2.36-fold increase in the water availability index (WAI). Factors regulating distribution and composition of the deciduous forest communities appear to be insolation and PFC, resulting in part from differences in topographic position.     

Beech forest communities in the Nordic countries – a multivariate analysis

In this study we present the first comprehensive multivariate analysis of beech (Fagus sylvatica) forest communities in the Nordic countries. The history of beech and beech forests in Scandinavia are described. In the north, the species is climatically restrained and, at present, restricted to Denmark and the southern parts of Sweden and Norway.More than 2000 sample plots were compiled, partly from literature, partly from new and unpublished data. The material included more than 20 studies of beech forests, often recorded by different non-standardised sampling designs. Therefore, prior to data analysis, a large number of plots had to be excluded to reduce the heterogeneity of the data. Only such sample plots were considered that showed a predominance of Fagus sylvatica in the canopy, that had a size within the interval of 16–100 m2, and that could be located by geographical coordinates. All species abundance values were transformed into simple species presences, and data from different vegetation layers were merged into one.A TWINSPAN cluster analysis resulted in 15 types. Three main communities with several sub-communities and varieties can be distinguished: (1) the Fagus sylvatica-Fraxinus excelsior-Stachys sylvatica community on the most basic and fertile soils, (2) the Fagus sylvatica-Corylus avellana-Galium odoratum community on moderately fertile and acid soils, and (3) the Fagus sylvatica-Sorbus aucuparia-Deschampsia flexuosa community on very acid and oligotrophic soils. Synonyms in the recent literature on Nordic beech forests to these communities are given. An ordination with the program DECORANA confirmed the primary significance of soil acidity and nutrient status for community differentiation.p>     

Vertical distribution of collembola, lumbricidae and elateridae in alluvial soils of floodplain forests

The species composition, abundance and, vertical distribution of Collembola (53 species), Lumbricidae (6 species), and Elateridae (12 species) are estimated in alluvial soils of the middle taiga floodplain forests. The significance of individual species in the formation of invertebrates communities in different biotopes are demonstrated, species that are adapted to high humidity are revealed. Invertebrates prefer to inhabit higher elements of the floodplain relief. The effects of relative “deepening” of groups of springtails and earthworms are demonstrated in wet soils of inter-ridge depressions.     

Distribution and abundance of tree species in swamp forests of Amazonian Ecuador

Research to date on Amazonian swamps has reinforced the impression that tree communities there are dominated by a small, morphologically specialized subset of the regional flora capable of surviving physiologically challenging conditions. In this paper, using data from a large‐scale tree inventory in upland, floodplain, and mixed palm swamp forests in Amazonian Ecuador, we report that tree communities growing on well‐drained and saturated soils are more similar than previously appreciated. While our data support the traditional view of Amazonian swamp forests as low‐diversity tree communities dominated by palms, they also reveal four patterns that have not been well documented in the literature to date: 1) tree communities in these swamp forests are dominated by a phylogenetically diverse oligarchy of 30 frequent and common species; 2) swamp specialists account for < 10% of species and a minority of stems; 3) most tree species recorded in swamps (> 80%) also occur in adjacent well‐drained forest types; and 4) many tree species present in swamps are common in well‐drained forests (e.g. upland oligarchs account for 34.1% of all swamp stems). These observations imply that, as in the temperate zone, the composition and structure of Amazonian swamp vegetation are determined by a combination of local‐scale environmental filters (e.g. plant survival in permanently saturated soils) and landscape‐scale patterns and processes (e.g. the composition and structure of tree communities in adjacent non‐swamp habitats, the dispersal of propagules from those habitats to swamps). We conclude with suggestions for further research to quantify the relative contributions of these factors in structuring tree communities in Amazonian swamps.     

Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils

The diversity and composition of soil bacterial communities were compared among six Austrian natural forests, including oak-hornbeam, spruce-fir-beech, and Austrian pine forests, using terminal restriction fragment length polymorphism (T-RFLP, or TRF) analysis and sequence analysis of 16S rRNA genes. The forests studied differ greatly in soil chemical characteristics, microbial biomass, and nutrient turnover rates. The aim of this study was to relate these differences to the composition of the bacterial communities inhabiting the individual forest soils. Both TRF profiling and clone sequence analysis revealed that the bacterial communities in soils under Austrian pine forests, representing azonal forest types, were distinct from those in soils under zonal oak-hornbeam and spruce-fir-beech forests, which were more similar in community composition. Clones derived from an Austrian pine forest soil were mostly affiliated with high-G+C gram-positive bacteria (49%), followed by members of the alpha-Proteobacteria (20%) and the Holophaga/Acidobacterium group (12%). Clones in libraries from oak-hornbeam and spruce-fir-beech forest soils were mainly related to the Holophaga/Acidobacterium group (28 and 35%), followed by members of the Verrucomicrobia (24%) and the alpha-Proteobacteria (27%), respectively. The soil bacterial communities in forests with distinct vegetational and soil chemical properties appeared to be well differentiated based on 16S rRNA gene phylogeny. In particular, the outstanding position of the Austrian pine forests, which are determined by specific soil conditions, was reflected in the bacterial community composition.     

Distribution of the ticks <Emphasis Type="Italic">Ixodes persulcatus</Emphasis> and <Emphasis Type="Italic">Ixodes pavlovskyi</Emphasis> on the boundary of the forest and forest-steppe zones in the Ob region

Surveys of ixodoid ticks were performed in Novosibirsk Province (Novosibirsk and Toguchin Districts) and in the vicinity of Akademgorodok (Novosibirsk) in 2009–2010. The abundance and distribution of ticks were assessed in 8 types of habitats. Ixodes persulcatus (Schulze, 1930) was collected by flagging in Novosibirsk and Toguchin Districts, with the highest densities of 19 ind./km being observed in habitats with small-leaved trees. Three species of ticks: Ixodes persulcatus, I. pavlovskyi (subspecies I. pavlovskyi occidentalis Filip. et Pan., 1998), and Dermacentor reticulatus (Fabricius, 1794) were recorded in a recreational forest of Akademgorodok. A high abundance (22 ind./km) of I. pavlovskyi was observed in pine forests subjected to considerable recreational load. The abundance of I. persulcatus was the highest in aspen-birch and birch-aspen forests. D. reticulatus was captured in pine forests and fallow lands, its abundance varying from 0.2 to 2 ind./km.     

Trade-off between light availability and soil fertility determine refugial conditions for the relict light-demanding species in lowland forests

Identifying potential refugial habitats in the face of rapid environmental change is a challenge faced by scientists and nature conservation managers. Relict populations and refugial habitats are the model objects in those studies. Based on the example of Actaea europaea from Central Poland, we analyse the habitat factors influencing relict populations of continental, light-demanding species in lowland forests and examine which habitats of studied species corresponding most closely to ancient vegetation. Our results indicate that the current refugial habitats of Actaea europaea include not only communities which are very similar to ancient open forest but also forests with a closed canopy. Although the populations are influenced by nitrogen and light availability, the co-occurrence of these two factors in forest communities is limited by dense canopy formation by hornbeam and beech trees on fertile soils and in more humid conditions. Our findings indicate that the future survival of relict, light-demanding communities in lowland forests requires low-intensity disturbances to be performed in tree-stands, according to techniques, which imitate traditional forests management.     

Tree communities and soil properties influence fungal community assembly in neotropical forests

The influence exerted by tree communities, topography, and soil chemistry on the assembly of macrofungal communities remains poorly understood, especially in highly diverse tropical forests. Here, we used a large dataset that combines inventories of macrofungal Basidiomycetes fruiting bodies, tree species composition, and measurements for 16 soil physicochemical parameters, collected in 34 plots located in four sites of lowland rain forests in French Guiana. Plots were established on three different topographical conditions: hilltop, slope, and seasonally flooded soils. We found hyperdiverse Basidiomycetes communities, mainly comprising members of Agaricales and Polyporales. Phosphorus, clay contents, and base saturation in soils strongly varied across plots and shaped the richness and composition of tree communities. The latter composition explained 23% of the variation in the composition of macrofungal communities, probably through high heterogeneity of the litter chemistry and selective effects of biotic interactions. The high local heterogeneity of habitats influenced the distribution of both macrofungi and trees, as a result of diversed local soil hydromorphic conditions associated with contrasting soil chemistry. This first regional study across habitats of French Guiana forests revealed new niches for macrofungi, such as ectomycorrhizal ones, and illustrates how macrofungi inventories are still paramount to can be to understand the processes at work in the tropics. Abstract in Spanish is available with online material.     

Dispersal patterns of oribatid mites across habitats and seasons

Oribatid mites are tiny arthropods that are common in all soils of the world; however, they also occur in microhabitats above the soil such as lichens, mosses, on the bark of trees and in suspended soils. For understanding oribatid mite community structure, it is important to know whether they are dispersal limited. The aim of this study was to investigate the importance of oribatid mite dispersal using Malaise traps to exclude sole passive wind-dispersal. Oribatid mite communities were collected over a 3-year period from five habitat types (coniferous forests, deciduous forests, mixed forests, meadows, bog/heathlands sites) and three seasons (spring, summer, autumn) in Sweden. Mites entered traps either by walking or by phoresy, i.e., by being attached to flying insects. We hypothesized (1) that oribatid mite communities in the traps differ between habitats, indicating habitat-limited dispersal, and (2) that oribatid mite communities differ among seasons suggesting that dispersal varies due to changing environmental conditions such as moisture or resource availability. The majority of the collected species were not typically soil-living species but rather from habitats such as trees, lichens and mosses (e.g., Carabodes labyrinthicus, Cymbaeremaeus cymba, Diapterobates humeralis and Phauloppia lucorum) indicating that walking into the traps or entering them via phoresy are of greater importance for aboveground than for soil-living species. Overall, oribatid mite communities collected in the traps likely originated from the surrounding local habitat suggesting that long distance dispersal of oribatid mites is scarce. Significant differences among seasons indicate higher dispersal during warm and dry periods of the year. Notably, 16 species of oribatid mites collected in our study were sampled for the first time in Sweden. This study also demonstrates that Malaise traps are a meaningful tool to investigate spatial and temporal patterns of oribatid mite communities.

     

Distinctive Bacterial Communities in the Rhizoplane of Four Tropical Tree Species

It is known that the microbial community of the rhizosphere is not only influenced by factors such as root exudates, phenology, and nutrient uptake but also by the plant species. However, studies of bacterial communities associated with tropical rainforest tree root surfaces, or rhizoplane, are lacking. Here, we analyzed the bacterial community of root surfaces of four species of native trees, Agathis borneensis, Dipterocarpus kerrii, Dyera costulata, and Gnetum gnemon, and nearby bulk soils, in a rainforest arboretum in Malaysia, using 454 pyrosequencing of the 16S rRNA gene. The rhizoplane bacterial communities for each of the four tree species sampled clustered separately from one another on an ordination, suggesting that these assemblages are linked to chemical and biological characteristics of the host or possibly to the mycorrhizal fungi present. Bacterial communities of the rhizoplane had various similarities to surrounding bulk soils. Acidobacteria, Alphaproteobacteria, and Betaproteobacteria were dominant in rhizoplane communities and in bulk soils from the same depth (0–10?cm). In contrast, the relative abundance of certain bacterial lineages on the rhizoplane was different from that in bulk soils: Bacteroidetes and Betaproteobacteria, which are known as copiotrophs, were much more abundant in the rhizoplane in comparison to bulk soil. At the genus level, Burkholderia, Acidobacterium, Dyella, and Edaphobacter were more abundant in the rhizoplane. Burkholderia, which are known as both pathogens and mutualists of plants, were especially abundant on the rhizoplane of all tree species sampled. The Burkholderia species present included known mutualists of tropical crops and also known N fixers. The host-specific character of tropical tree rhizoplane bacterial communities may have implications for understanding nutrient cycling, recruitment, and structuring of tree species diversity in tropical forests. Such understanding may prove to be useful in both tropical forestry and conservation.     

The Emerging Era of Novel Tropical Forests

In 1966 Eugene P. Odum delivered a speech before the Ecological Society of America that transformed the way ecologists looked at succession. His comparison of mature and successional systems lead ecologists to place secondary forests in an inferior position relative to mature ones to the point that today, prominent tropical biologists argue for and against the conservation value of secondary forests. Nevertheless, we live in the era of secondary forests that is rapidly giving way to a new era of novel tropical forests. Research in Puerto Rico documents the emergence of novel forests, which are different in terms of species composition, dominance, and relative importance of species from forests that were present before the island was deforested. These novel forests emerged without assistance. They are a natural response to the new environmental conditions created by human activity. Natural processes have remixed or reassembled native and introduced plant and animal species into novel communities adapted to anthropogenic environmental conditions. Novel forests are expected to protect soils, cycle nutrients, support wildlife, store carbon, maintain watershed functions, and mitigate species extinctions. The dawn of the age of tropical novel forests is upon us and must not be ignored.     

Comparison of soil microbial communities inhabiting vineyards and native sclerophyllous forests in central Chile

Natural ecosystems provide services to agriculture such as pest control, soil nutrients, and key microbial components. These services and others in turn provide essential elements that fuel biomass productivity. Responsible agricultural management and conservation of natural habitats can enhance these ecosystem services. Vineyards are currently driving land‐use changes in many Mediterranean ecosystems. These land‐use changes could have important effects on the supporting ecosystems services related to the soil properties and the microbial communities associated with forests and vineyard soils. Here, we explore soil bacterial and fungal communities present in sclerophyllous forests and organic vineyards from three different wine growing areas in central Chile. We employed terminal restriction fragment length polymorphisms (T‐RFLP) to describe the soil microbial communities inhabiting native forests and vineyards in central Chile. We found that the bacterial community changed between the sampled growing areas; however, the fungal community did not differ. At the local scale, our findings show that fungal communities differed between habitats because fungi species might be more sensitive to land‐use change compared to bacterial species, as bacterial communities did not change between forests and vineyards. We discuss these findings based on the sensitivity of microbial communities to soil properties and land‐use change. Finally, we focus our conclusions on the importance of naturally derived ecosystem services to vineyards.     

Structure, floristic composition and natural regeneration in the forests of Cat Tien National Park, Vietnam: an analysis of the successional trends

The forests in Cat Tien National Park, appear as a mosaic of different communities, distinct from each other with respect to their floristic and structural parameters. The objectives of this study are (1) to characterize the different formations occurring in the lowland part and (2) to identify the main successional trends in the area. Understanding forest succession is important for silviculture and restoration of forests and land rehabilitation, as adequate information on the ecological role of local species in the functioning of the forests is not available in Vietnam. Five plots (1 ha each) were established in the lowland part of Cat Tien National Park, where all the trees ≥ 10 cm d.b.h. (diameter at breast height) were located, measured and identified. A systematic sampling was made to assess the regeneration. Three plots (A, C and D) can be considered as secondary forests on the basis of their structural parameters. Plots A and C are dominated by Lagerstrmia calyculata and plot D by Dipterocarpus alatus. The other two plots can be regarded as mature forests. Plot B corresponds to a semideciduous formation dominated by Lagerstrmia calyculata and Fabaceae species, and plot E to an evergreen one dominated by dipterocarp species. The floristic composition of plots A and C will change in the future because dominant canopy species are rare or absent in regeneration. A correspondence analysis performed on the number of trees per species shows two kinds of successional trends: one from A to B on shallow and drier soils, and another from C to E on deeper and wetter soils.     

Comparison of Diversities and Compositions of Bacterial Populations Inhabiting Natural Forest Soils

The diversity and composition of soil bacterial communities were compared among six Austrian natural forests, including oak-hornbeam, spruce-fir-beech, and Austrian pine forests, using terminal restriction fragment length polymorphism (T-RFLP, or TRF) analysis and sequence analysis of 16S rRNA genes. The forests studied differ greatly in soil chemical characteristics, microbial biomass, and nutrient turnover rates. The aim of this study was to relate these differences to the composition of the bacterial communities inhabiting the individual forest soils. Both TRF profiling and clone sequence analysis revealed that the bacterial communities in soils under Austrian pine forests, representing azonal forest types, were distinct from those in soils under zonal oak-hornbeam and spruce-fir-beech forests, which were more similar in community composition. Clones derived from an Austrian pine forest soil were mostly affiliated with high-G+C gram-positive bacteria (49%), followed by members of the α-Proteobacteria (20%) and the Holophaga/Acidobacterium group (12%). Clones in libraries from oak-hornbeam and spruce-fir-beech forest soils were mainly related to the Holophaga/Acidobacterium group (28 and 35%), followed by members of the Verrucomicrobia (24%) and the α-Proteobacteria (27%), respectively. The soil bacterial communities in forests with distinct vegetational and soil chemical properties appeared to be well differentiated based on 16S rRNA gene phylogeny. In particular, the outstanding position of the Austrian pine forests, which are determined by specific soil conditions, was reflected in the bacterial community composition.     

Regeneration successions of northern taiga spruce forests under reduction of aerotechnogenic impact

The development of the composition and structure of northern taiga spruce forests on the Kola Peninsula under regeneration succession with a reduction in emissions from the metallurgical combine are described. Parameters of species diversity and ecological-coenotic structure of plant communities, including algosinusia of soils, are assessed under different technogenic impacts. Significant indices of stable transformations of plants from different layers during the regeneration succession were revealed. Strongly transformed communities in the vicinity of the combine are shown to remain in a critical state due to the preserved high level of soil pollution and demutation changes of the taiga components in the course of allogenic succession.