Morphological and seed protein characterization of the cultivated and the wild taxa of Sesamum L. (Pedaliaceae)

Seed protein analysis and morphological characterization were carried out in one cultivated and one wild species of Sesamum, Sesamum indicum L. and S. occidentale Regel and Heer. Data on 13 quantitative and 33 qualitative characters of the cultivated species and seven accessions of the wild taxa were analyzed. The genetic diversity of the taxa was assessed using UPGMA dendrogram and one-way ANOVA (p?<?0.05). Principal component analysis (PCA) was executed to identify the significant characters to delimit the taxa. Seed protein analysis showed diverse bands, ranging from 16 to 88?kDa. A dendrogram based on UPGMA analysis of seed protein suggested intraspecific relationships of the wild taxa as evidenced from the morphological characterization.     

Genetic and morphological divergence within the Sebastes pachycephalus complex (Scorpaeniformes: Scorpaenidae)

Genetic and morphological divergence among the four subspecies in the Sebastes pachycephalus complex (S. pachycephalus pachycephalus, S. p. nigricans, S. p. nudus and S. p. chalcogrammus) was clarified. Principal coordinate analysis (PCoA) based on AFLP clearly divided 55 specimens of the complex into two groups, the S. p. pachycephalus?CS. p. nigricans group (P-Ni group) and the S. p. nudus?CS. p. chalcogrammus group (Nu-C group), although three specimens occupied intermediate positions. The minimum spanning network (MSN) based on partial sequences of the mitochondrial control region (mtCR) failed to separate either the P-Ni and Nu-C groups or the four subspecies into distinct clades, although restricted gene flow and genetic differentiation between the former were indicated by the F _ST estimation. Differences in morphological characters, including counts of pectoral fin rays and counts of dorsal fin spines lacking basal scales, were also evident between the two groups. However, little or no genetic or morphological difference was found between the two subspecies within each group. It was concluded that the P-Ni and Nu-C groups of the S. pachycephalus complex actually represent two different species, which is further supported by their sympatric distribution. Differences in dorsal body coloration and the presence or absence of brown spots on the ventral surface, which were formerly used to discriminate between four ??subspecies,?? may simply represent intraspecific variation. The three specimens occupying intermediate positions in the AFLP PCoA also occupied equivocal positions between the two species in the principal component analysis (PCA) based on morphometric characters, suggesting that they were hybrids between the two species. The star-shaped MSN of mtCR, which lacks distinct clades representing the two species, may be due to not only interspecific hybridization but also the sharing of ancestral haplotypes.     

Morphometric,meristic and ISSR marker systems for species identification and evolutionary analysis in five Indian Channids

Snakehead species belonging to Channidae are primary group of freshwater air breathing fishes having their confined distribution in African and Asian continents. ISSR – PCR was used to investigate the phylogenetic relationship among five Channidae species viz. Channa striatus, Channa marulius, Channa punctatus, Channa diplogramme and Channa gachua. In addition, morphometric and meristic characters were subjected to principal component analysis (PCA) and the bootstrap values within the species were also calculated. The genetic identity between the species ranged from 0.5526 to 0.7632 and the genetic distance ranged from 0.2703 to 0.5931. The Nei's gene diversity (H) was calculated as 0.2653 and the Shannon's information index (I) was 0.3842. UPGMA dendrogram arrived by the morphological and molecular markers revealed the closeness between C. striatus and C. marulius among the five species.     

Intergeneric protoplast fusion between Calocybe indica (milky mushroom) and Pleurotus florida aids in the qualitative and quantitative improvement of sporophore of the milky mushroom

This article primarily focuses on the production of somatic hybrid sporophores through PEG-mediated protoplast fusion between Calocybe indica var. APK2 and Pleurotus florida. To screen the hybrid strains a selection strategy was followed based on the differential tolerance of NaCl level by the two parental genera. Basidiocarps could be successfully generated from eight out of fourteen hybrid lines that were maintained in culture. Hybridity of the fusant lines was established on the basis of their colony morphology, mycelial growth rate and hyphal traits, while the fruit-body-generating lines were demarcated on the basis of nature of sporophores, isozyme and RAPD markers. The degree to which the hybrid population differed among themselves and from their parents was assessed by analysing each of these morphological variables by one-way analysis of variance (ANOVA). RAPD bands of the fusant lines were similar to either parental bands or were new non-parental bands, which classified them into the microgenome and macrogenome insertion types. A dendrogram created with the help of UPGMA method of clustering and Euclidean distance exhibited three major clusters, in which the Pleurotus–Calocybe hybrids showed intra-cluster variations. Notably, P. florida was genetically distant from the hybrid lines, while C. indica was phylogenetically the dominant parent. Significant increase in bio-efficiency and γ-linoleic acid content in these hybrid lines indicated quantitative as well as qualitative improvement of the newly developed somatic hybrids.     

Comparative morphometry as a diagnostic tool applied to species delimitation in the genus Gastridium P. Beauv. (Poaceae)

Based on critical examination of both fresh and dried specimens and a morphometric analysis of herbarium specimens we performed a comparative study of the three closely related Gastridium (Poaceae, Tribe: Poeae, Subtribe: Agrostidinae) species G. ventricosum, G. phleoides and G. scabrum collected in Italy. The study aimed to provide new diagnostic tools to improve the taxonomy of the genus and confirm species delimitation. Variation in floral morphology in the three species was explored using seven quantitative and ten qualitative characters measured on 318 spikelets, both awned and unawned. Statistical methods, including principal components analysis (PCA) and non‐metric multidimensional scaling (NMDS), were used. Numerical analyses showed a general distinctness of spikelets and florets, consistent with the three studied species, and revealed among and within species variation patterns in both spikelet types. Accordingly, the most informative quantitative characters appeared to be the width and length of glumes and the length of awns, useful to distinguish G. phleoides which has the narrowest glumes and longer awns than the other species, while G. scabrum has the widest glumes. The most informative qualitative characters appeared to be the presence/absence of thick hairs or minute tubercles on the upper side of the lemma. The autonomy of the three studied species was confirmed. The taxonomic significance of the results is briefly discussed, and notes on the species distribution are included. Some nomenclatural and taxonomic notes on G. scabrum, of which literature still showed evidence of a general unawareness, are provided.     

Genetic relationship and genetic diversity among Typha taxa from East Asia based on AFLP markers

The genetic relationship and diversity among four Typha taxa in East Asia were evaluated using amplified fragment length polymorphism (AFLP) markers. Three AFLP selective primer combinations generated a total of 707 amplification products, of which 704 (99.6%) were polymorphic. The unweighted pair-group method with arithmetic mean (UPGMA) dendrogram and principal component analysis (PCA) plot confirmed the taxonomic status of four separate species. East Asian Typha taxa separated into two groups: the first with Typha angustifolia and the second with T. orientalis, T. laxmanni, and T. latifolia with a high bootstrap value for UPGMA (93%) and a low first score for PCA (25%). The two clusters corresponded with two sections based on the bracteoles in the female flower: section Bracteolatae and section Ebracteolatae. T. angustifolia showed the highest genetic diversity among the four Typha taxa (percentage of polymorphic loci [PPL] = 71%, H_o = 0.157), whereas T. latifolia had the lowest genetic diversity (PPL = 40%, H_o = 0.117). Genetic diversity was related to the presence of the gap between male and female inflorescences. A positive correlation between genetic distance and geographic distance was clearly found in the two species with continuous inflorescences (T. latifolia and T. orientalis). This positive correlation was not observed in the other species with discontinuous spikes (T. angustifolia and T. laxmanni).     

Biatora meiocarpa (Nyl.) Arnold,a misunderstood species

Abstract:Biatora meiocarpa (Nyl.) Arnold (Lecanorales, lichenized Ascomycotina) is described and compared with some of its relatives, particularly B. helvola Körber ex Hellborn (syn. Lecidea helvola), a species with which it has often been confused. Biatora meiocarpa and B. helvola differ in (1) width of the paraphysis tops, (2) hymenium height, (3) apothecium width, (4) gelatinization of the paraphyses, (5) composition of the excipulum (hyphae with ellipsoid or shortly rectangular lumina in B. meiocarpa, narrowly linear lumina in B. helvola), (6) chemistry (1-2 triterpenoids or no substances in B. meiocarpa, gyrophoric acid plus 1-2 triterpenoids in B. helvola), and (7) length and shape of conidia. The variation in the first three characters overlaps but one-way analysis of variance (ANOVA) shows that B. meiocarpa and B. helvola differ significantly in each of these characters. Three further characters were subjected to ANOVA: spore length, spore width and length/width ratio of the spores. No statistically significant differences were observed in these characters. Biatora meiocarpa generally occurs on smooth bark of broad-leaved trees and shrubs. It is known from northern Sweden, Finland, and northwestern Russia.     

Cladistic and phenetic analyses of relationships among Fusarium spp. in Dongtan wetland by morphology and isozymes

Variations of 12 morphological characters and 78 isozymic bands among 78 isolates of five Fusarium spp. from Dongtan wetland were described and analysed with cladistic parsimony and phenetic UPGMA methods. Hierarchical cluster analysis of 12 morphological characters grouped 78 strains into five defined species with a high overlap between isolates. Hierarchical cluster analysis of isozyme patterns showed a higher degree of relationship among five Fusarium spp., in which Fusarium nivale, Fusarium semitectum and Fusarium oxysporum clustered as one group, and F. semitectum was closer to F. nivale than to F. oxysporum; Fusarium graminearum and Fusarium moniliforme formed one group and showed clearly distinct from the first group. Groups of individual isolates indicated by a plot of principal component analysis were consistent with these findings. The comparison of two different data sets revealed that isozyme patterns showed higher variations between species and among individual isolates than morphological characters. Parsimony analysis of morphological characters yielded unresolved cladograms. Parsimony analysis of isozymes as presence/absence characters revealed the same five species in general as the results indicated by phenetic analysis, differing in the relative position of species in subclusters.     

Morphometric studies and taxonomic delimitation in Menonvillea scapigera and related species (Cremolobeae: Brassicaceae)

Previous systematic treatments of Menonvillea recognized a group of six morphologically related species, the ‘M. scapigera group,' distinguished by having pinnately lobed leaves and united filaments of median staminal pairs. The number of recognized species ranged from six to two, one with three subspecies. In order to clarify the taxonomy of this group, multivariate and univariate analyses of qualitative and quantitative characters from herbarium specimens were performed. Additionally, to test the morphological results, the phylogenetic relationships and degree of exclusive ancestry were studied using ITS sequences and the genealogical sorting index. Our results support the recognition of three species (M. famatinensis, M. hirsuta, M. scapigera) delimited by a unique combination of qualitative characters. Quantitative characters support the division of the latter species into two subspecies: scapigera and longipes. The molecular data are congruent with the morphology and support the inclusion of M. hookeri within M. scapigera. A key to taxa of the M. scapigera group is presented.     

Morphometric analysis of varieties of Acacia caven: (Leguminosae, Mimosoideae): Taxonomic inferences in the context of other Argentinean species

The aims of this study were to evaluate the degree of morphological differentiation between six varieties of Acacia caven and to examine their taxonomic validity in the context of other Argentinean species of the genus. To accomplish these purposes, morphological traits have been analyzed using multivariate methods (non parametric ANOVA, phenetic analysis and principal component analysis) on the varieties of A. caven and other six species of the genus, represented in Argentina. The phenogram obtained showed two principal clusters, one grouping all the species of subg. Acacia and the other grouping the species of subg. Aculeiferum. This result agreed with Vassal's infrageneric classification. However, the results of the principal PCA gathered the seven species here included in three groups, which were consistent with Bentham's infrageneric treatment. The ANOVA method indicated that most of the morphometric characters used were statistically sound for differentiation between varieties of A. caven. Further studies, including more species and characters, must be performed in order to clarify the position of Acacia boliviana and the relationships between A. caven and A. curvifructa.     

Structural analysis of subterranean organs in Zingiberaceae

Xylem structural characteristics are rarely used to separate tribes. This study aims to characterize the morphology of subterranean organs and determine both the occurrence and distribution of the vessel elements in ten species, belonging to Alpinieae and Zingibereae tribes. Species were from protected areas in the Brazilian Atlantic Rain Forest or from private cultivation areas. Roots and rhizomes processing followed both light and scanning electron microscopy procedures. According to morphological and anatomical characteristics, Euclidean distances among taxa were calculated, resulting in a dendrogram based on the unweighted pair group method with arithmetic mean (UPGMA) clustering. Despite our results indicating a similarity among all the species studied, they could be segregated by using qualitative and special metabolites characters in both the rhizome and the root. Vessel elements were found to be confined to the roots, presenting several basal characters in most of species, except for Alpinia purpurata and Etlingera species.     

Morphological variation and evolutionary significance of <Emphasis Type="Italic">Coccinia grandis</Emphasis> (L.) Voigt: an under-exploited cucurbitaceous vegetable crop

Morphological variation was analyzed in wild accessions and cultivars of the vegetatively propagated dioecious Coccinia grandis. Variations of 43 morphological characters, 19 qualitative and 23 quantitative traits, were analyzed among 40 female accessions, including 25 cultivars and 15 wild accessions. Multivariate statistical analyses were used to group accessions according to their morphological similarity. Principal component (PC) analysis revealed that the first three PCs accounted for 50% of the total variance, and differences among the accessions were evidenced principally in relation to fruit characteristics such as fruit weight, fruit length and the number of seeds in each fruit. Analysis of variance carried out in the entire germplasm revealed significant differences within the germplasm, whereas ANOVA carried out between the wild accessions and the cultivars proved the null hypothesis that there are no significant differences between the two groups, and differences were observed only in fruit characters that are targets of human selection. Principal component analysis, UPGMA cluster analysis and discriminant factor analysis revealed strong overlaps between the two groups indicating the ongoing process of evolution and selection in the species.     

A phenetic analysis on the genus Lolium (Poaceae) in Iran

In this study, 68 specimens of the genus Lolium were scored for 27 characters, comprising 12 vegetative, 12 inflorescence and 3 seed characters. The aim of the study was to investigate the species relationships within the genus in Iran. The data were analysed using principal components analysis (PCA) and cluster analysis. Both analyses separated L. perenne, L. persicum, L. temulentum, L. multiflorum from each other. According to previous authors, L. rigidum and L. loliaceum show little difference from each other and are not separable to a species level. In this study these two species separated clearly from the other species, but were most closely related to L. perenne following cluster analysis and to L. multiflorum following PCA. L. persicum was found to be the most distinct species within the genus Lolium in Iran.     

Carterella (Rubiaceae), new genus from Baja California,Mexico

Carterella is described as a new genus based on Bouvardia alexanderae, endemic to Baja California Sur, Mexico. Closest relationships are to the Houstonia mucronata group, but qualitative differences in seed characters and striking quantitative differences in floral characters provide evidence for recognition of a new monotypic genus.     

Systematic importance of pollen morphological features of selected species from the genus Rosa (Rosaceae)

The aim of this study is verification of the taxonomic usefulness of the pollen grain features studied, based on pollen morphology of 32 wild species from all 4 subgenera and all 10 sections of the genus Rosa, mainly for delimitation of subgenera, sections, and species. The measurements and observations were carried out with both light microscopy and scanning electron microscopy. Only correctly formed pollen grains (30 per specimen) were measured, and 960 pollen grains were examined in total. They were analyzed for 14 quantitative features of pollen grains and exine sculpturing and the following qualitative ones: outline, shape, and operculum structure. Our study revealed that the diagnostic features of pollen grains studied were: exine sculpture, length of polar axis, and pollen shape (P/E ratio). On the basis of the above characters, five species were isolated and the remaining ones were included in several groups isolated on the basis of exine sculpture types. The following three exine sculpture types occurred in the species studied: granular-verrucate (in R.?stellata), striate-psilate (in R.?multibracteata and R.?multiflora), and striate (the remaining species). R.?banksiae is characterized by small pollen grains, while R.?setigera has strongly elongated pollen with P/E ratio >1.5. Exine sculpture features considered to be diagnostic should be treated as auxiliary because they fail to differentiate individual species, although they can be helpful in distinguishing groups of species of similar exine sculpture. The arrangement of the species examined on a dendrogram only slightly corroborates division of the Rosa genus into subgenera and sections currently adopted in taxonomy (Rehder 1940). An interesting result was reported for the species studied from the Caninae (R.?agrestis, R.?canina, R.?dumalis, R.?jundzillii, and R.?rubiginosa) section which, despite hybrid nature, with the exception of R.?villosa, grouped in the same, most separated group of species.