Inbreeding depression and genetic load in laboratory metapopulations of the butterfly Bicyclus anynana

Abstract.— We investigated the effects of inbreeding on various fitness components and their genetic load in laboratory metapopulations of the butterfly Bicyclus anynana . Six metapopulations each consisted of four subpopulations with breeding population sizes of N = 6 or N = 12 and migration rate of m = 0 or m = 0.33. Metapopulations were maintained for seven generations during which coancestries and pedigrees were established. Individual inbreeding coefficients at the F₇ were calculated and ranged between 0.01 and 0.51. Even though considerable purging had occurred during inbreeding, the genetic load remained higher than that of many outbreeding species: approximately two lethal equivalents were detected for egg sterility, one for zygote survival, one for juvenile survival, and one for longevity. Severe inbreeding depression occurred after seven generations of inbreeding, which jeopardized the metapopulation survival. This finding suggests that the purging of genetic load by intentional inbreeding cannot be recommended for the genetic conservation of species with a high number of lethal.     

Comparative effects of inbreeding and outbreeding on the ontogeny of Heliconius erato phyllis (Lepidoptera: Nymphalidae)

Inbreeding depression has been reported in various groups of organisms, including insects. Estimates of inbreeding consequences were obtained by comparing 12 life‐history and morphological traits among nine inbred families (F = 0.25) and 16 outbred families (F = 0) of the Neotropical butterfly Heliconius erato phyllis. A Student's t‐test showed statistically significant differences for pupal weight and right forewing area, both in males and in females, between inbred and outbred families. Survival during development, from egg hatching to adulthood, also differed significantly between inbred and outbred families. The average number of haploid lethal equivalents was 0.17 for pupal weight, 0.15 for forewing area and 0.71 for survival from hatching to adulthood. The results of this study confirm that the consequences of inbreeding are more deleterious to life history traits than to morphological ones.     

Demographic and genetic estimates of effective population size (Ne) reveals genetic compensation in steelhead trout

Estimates of effective population size (Ne) are required to predict the impacts of genetic drift and inbreeding on the evolutionary dynamics of populations. How the ratio of Ne to the number of sexually mature adults (N) varies in natural vertebrate populations has not been addressed. We examined the sensitivity of Ne/N to fluctuations of N and determined the major variables responsible for changing the ratio over a period of 17 years in a population of steelhead trout (Oncorhynchus mykiss) from Washington State. Demographic and genetic methods were used to estimate Ne. Genetic estimates of Ne were gained via temporal and linkage disequilibrium methods using data from eight microsatellite loci. DNA for genetic analysis was amplified from archived smolt scales. The Ne/N from 1977 to 1994, estimated using the temporal method, was 0.73 and the comprehensive demographic estimate of Ne/N over the same time period was 0.53. Demographic estimates of Ne indicated that variance in reproductive success had the most substantial impact on reducing Ne in this population, followed by fluctuations in population size. We found increased Ne/N ratios at low N, which we identified as genetic compensation. Combining the information from the demographic and genetic methods of estimating Ne allowed us to determine that a reduction in variance in reproductive success must be responsible for this compensation effect. Understanding genetic compensation in natural populations will be valuable for predicting the effects of changes in N (i.e. periods of high population density and bottlenecks) on the fitness and genetic variation of natural populations.     

Local genetic differentiation in Proteopsis argentea (Asteraceae), a perennial herb endemic in Brazil

 Proteopsis argentea (Asteraceae, Vernonieae) is a perennial herb endemic to the “campos rupestres” of the Espinha?o Range in Minas Gerais, Brazil, with fragmented populational distribution. Eleven populations were sampled, throughout the entire distribution of the species, and assayed for isozyme variation. Low intra-population genetic diversity was found (P = 19.2; A = 1.30; He = 0.058) whereas species level diversity was higher (P = 55.5, A = 2.0, He = 0.093). The most geographically isolated population showed exclusive alleles at two loci, whereas two populations less than 2 km apart from each other showed inverted frequencies for two alleles. Mean genetic identity was high (I = 0.974), but the large Fst (0.30) indicates that the species could lose an important part of its genetic variation with the extinction of a single population. Our findings indicate that geographic isolation alone cannot explain population differentiation: localized pollinator behaviour and selection, for example, may be contributing to the patterns observed. Received February 18, 2000 Accepted November 1, 2000     

Low population differentiation and high genetic diversity in the invasive species Carduus acanthoides L. (Asteraceae) within its native range in the Czech Republic

Colonizing species are predicted to suffer from reductions in genetic diversity during founding events. Although there is no unique mode of reproduction that is characteristic of successful plant colonizers, many of them are predominantly self-fertilizing or apomictic species, and almost all outcrossing colonizers are self-compatible. Carduus acanthoides comprises a species of disturbed habitats with wind-dispersed seeds that colonizes open spaces of various sizes. Population genetic diversity was expressed by assessing patterns of variation at nine putatively neutral allozyme loci within and among 20 natural populations in its native distribution range in the Czech Republic. Overall, C. acanthoides displayed high levels of genetic diversity compared to other herbaceous plants. The percentage of polymorphic loci was 84.5, with values of 2.37, 0.330, and 0.364 for the mean number of alleles per polymorphic locus ( A ), observed heterozygosity ( H _o), and expected heterozygosity ( H _e), respectively. There was only weak evidence of inbreeding within populations ( f  = 0.097) and very low genetic differentiation among populations ( θ  = 0.085). Analyses of the data provide strong evidence for isolation-by-distance for the whole study area. Even the colonizing species, C. acanthoides , currently supports a substantial amount of allozyme variation at both the species and population levels.  © 2009 The Linnean Society of London, Biological Journal of the Linnean Society , 2009, 98 , 596–607.     

RAPD variation in relation to population size and plant fitness in the rare Gentianella germanica (Gentianaceae)

We investigated the distribution of genetic variation and the relationship between population size and genetic variation in the rare plant Gentianella germanica using RAPD (random amplified polymorphic DNA) profiles. Plants for the analysis were grown from seeds sampled from 72 parent plants in 11 G. germanica populations of different size (40-5000 fruiting individuals). In large populations, seeds were sampled from parents in two spatially distinct subpopulations comparable in area to the total area covered by small populations. Analysis of molecular variance revealed significant genetic variation among populations (P <0.001), while genetic variation among subpopulations was marginally significant (P <0.06). Average molecular variance within subpopulations in large populations did not differ significantly from whole-population values. There was a positive correlation between genetic variation and population size (P <0.01). Genetic variation was also positively correlated with the number of seeds per plant in the field (P <0.02) and the number of flowers per planted seed in a common garden experiment (P <0.051). We conclude that gene flow among natural populations is very limited and that reduced plant fitness in small populations of G. germanica most likely has genetic causes. Management should aim to increase the size of small populations to minimize further loss of genetic variation. Because a large proportion of genetic variation is among populations, even small populations are worth preserving.     

Temporal dynamics of genetic variability in a mountain goat (Oreamnos americanus) population

The association between population dynamics and genetic variability is of fundamental importance for both evolutionary and conservation biology. We combined long-term population monitoring and molecular genetic data from 123 offspring and their parents at 28 microsatellite loci to investigate changes in genetic diversity over 14 cohorts in a small and relatively isolated population of mountain goats (Oreamnos americanus) during a period of demographic increase. Offspring heterozygosity decreased while parental genetic similarity and inbreeding coefficients (F(IS) ) increased over the study period (1995-2008). Immigrants introduced three novel alleles into the population and matings between residents and immigrants produced more heterozygous offspring than local crosses, suggesting that immigration can increase population genetic variability. The population experienced genetic drift over the study period, reflected by a reduced allelic richness over time and an 'isolation-by-time' pattern of genetic structure. The temporal decline of individual genetic diversity despite increasing population size probably resulted from a combination of genetic drift due to small effective population size, inbreeding and insufficient counterbalancing by immigration. This study highlights the importance of long-term genetic monitoring to understand how demographic processes influence temporal changes of genetic diversity in long-lived organisms.     

Offspring fitness in relation to population size and genetic variation in the rare perennial plant species Gentiana pneumonanthe (Gentianaceae)

Seeds were sampled from 19 populations of the rare Gentiana pneumonanthe, ranging in size from 5 to more than 50,000 flowering plants. An analysis was made of variation in a number of life-history characters in relation to population size and offspring heterozygosity (based on seven polymorphic isozyme loci). Life-his-tory characters included seed weight, germination rate, proportion of seeds germinating, seedling mortality, seedling weight, adult weight, flower production per plant and proportion of plants flowering per family. Principal component analysis (PCA) reduced the dataset to three main fitness components. The first component was highly correlated with adult weight and flowering performance, the second with germination performance and the third component with seed and seedling weight and seedling mortality. The latter two components were considered as being maternally influenced, since these comprised life-history traits that were significantly correlated with seed weight. Multiple regression analysis showed that variation in the first fitness component was mainly associated with heterozygosity and not with population size, while the third fitness component was only correlated with population size and not with heterozygosity. The latter relationship appeared to be non-linear, which suggests a stronger loss of fitness in the smallest populations. The second (germination) component was neither correlated with population size nor with genetic variation. There was only a weak association between population size, heterozygosity and the population coefficients of variation for each life history character. Most correlation coefficients were negative, however, which suggests that there is more variation among progeny from smaller populations. We conclude that progeny from small populations of Gentiana pneumonanthe show reduced fitness and may be phenotypically more variable. One of the possible causes of the loss of fitness is a combination of unfavourable environmental circumstances for maternal plants in small populations and increased inbreeding. The higher phenotypic variation in small populations may also be a result of inbreeding, which can lead to deviation of individuals from the average phenotype through a loss of developmental stability.     

Relationship between effective population size,inbreeding and adult fitness‐related traits in a steelhead (Oncorhynchus mykiss) population released in the wild

Inbreeding is of concern in supportive breeding programmes in Pacific salmonids, Oncorhynchus spp, where the number of breeding adults is limited by rearing space or poor survival to adulthood, and large numbers are released to supplement wild stocks and fisheries. We reconstructed the pedigree of 6602 migratory hatchery steelhead (Oncorhynchus mykiss) over four generations, to determine the incidence and fitness consequences of inbreeding in a northwest USA programme. The hatchery maintained an effective population size,  = 107.9 from F₀ to F₂, despite an increasing census size (N), which resulted in a decreasing N_e/N ratio (0.35 in F₀ to 0.08 in F₂). The reduced ratio was attributed to a small broodstock size, nonrandom transfers and high variance in reproductive success (particularly in males). We observed accumulation of inbreeding from the founder generation (in F₄, percentage individuals with inbreeding coefficients Δf > 0 = 15.7%). Generalized linear mixed models showed that body length and weight decreased significantly with increasing Δf, and inbred fish returned later to spawn in a model that included father identity. However, there was no significant correlation between Δf and age at return, female fecundity or gonad weight. Similarly, there was no relationship between Δf and reproductive success of F₂ and F₃ individuals, which might be explained by the fact that reproductive success is partially controlled by hatchery mating protocols. This study is one of the first to show that small changes in inbreeding coefficient can affect some fitness‐related traits in a monitored population propagated and released to the wild.     

Population genetic effects of urban habitat fragmentation in the perennial herb Viola pubescens (Violaceae) using ISSR markers

BACKGROUND AND AIMS: Fragmentation of natural habitats can negatively impact plant populations by leading to reduced genetic variation and increased genetic distance as populations become geographically and genetically isolated from one another. To test whether such detrimental effects occur within an urban landscape, the genetic structure of six populations of the perennial herb Viola pubescens was characterized in the metropolitan area of Greater Cincinnati in southwestern Ohio, USA. METHODS: Using three inter-simple sequence repeat (ISSR) markers, 51 loci amplified across all urban populations. For reference, four previously examined agricultural populations in central/northern Ohio and a geographically distant population in Michigan were also included in the analysis. KEY RESULTS: Urban populations retained high levels of genetic variation (percentage of polymorphic loci, P(p) = 80.7 %) with similar genetic distances among populations and an absence of unique alleles. Geographic and genetic distances were correlated with one another, and all populations grouped according to region. Individuals from urban populations clustered together and away from individuals from agricultural populations and from the Michigan population in a principle coordinates analysis. Hierarchical analysis of molecular variance (AMOVA) revealed that most of the genetic variability was partitioned within populations (69.1 %) and among groups (22.2 %) of southwestern Ohio, central/northern Ohio and Michigan groups. Mean F(st) was 0.308, indicating substantial population differentiation. CONCLUSIONS: It is concluded that urban fragmentation does not appear to impede gene flow in V. pubescens in southwestern Ohio. These results are consistent with life history traits of this species and the possibility of high insect abundance in urban habitats due to diverse floral resources and nesting sites. Combined with the cleistogamous breeding system of this species, pollinator availability in the urban matrix may buffer populations against detrimental effects of habitat fragmentation, at least in larger forest fragments. Consequently, it may be inappropriate to generalize about genetic effects of fragmentation across landscapes or even across plant species with different pollination systems.     

Survival in the Tropics despite isolation,inbreeding and asexual reproduction: insights from the genome of the world’s southernmost poplar (Populus ilicifolia)

Species are becoming extinct at unprecedented rates as a consequence of human activity. Hence it is important to understand the evolutionary dynamics of species with already small population sizes. Populus ilicifolia is a vulnerable poplar species that is isolated from other poplar species and is uniquely adapted to the Tropics. It has a very limited size, reproduces partly clonally and is therefore an excellent case study for conservation genomics. We present here the first annotated draft genome of P. ilicifolia, characterize genome‐wide patterns of polymorphisms and compare those to other poplar species with larger natural ranges. P. ilicifolia experienced a more prolonged and severe decline of effective population size (N_e) and signs of genetic erosion than any other poplar species with which it was compared. At present, the species has the lowest genome‐wide genetic diversity, the highest abundance of long runs of homozygosity, high inbreeding levels as well as a high overall accumulation of deleterious variants. However, more effective purging of severely deleterious variants and adaptation to the Tropics may have contributed to its survival. Hence, in spite of its limited genetic variation, it is certainly worth pursuing the conservation efforts of this unique species.     

Genetic diversity and hierarchical population structure of a rare autotetraploid plant,Aster kantoensis (Asteraceae)

We sampled 17 populations of a rare autotetraploid Aster kantoensis (Asteraceae) from three river systems located in central Japan, and studied them for allelic variation at 22 enzyme loci. There was no significant correlation between the actual population size and three genetic diversity parameters, suggesting that the effective population size was very small even for the large populations, i.e., even large populations may still have a high probability of being of recent origin and remain influenced by the founder effect. Compared to other autotetraploid species, the total genetic variation of A. kantoensis is small. The number of alleles and gene diversity of a population were not significantly different among the river systems, although the percentage of polymorphic loci was different. Genetic differentiation among river systems was larger than between populations within the river systems, thereby indicating that gene flow between river systems is small, especially between the Kinu River system and Tama or Sagami River systems.     

Inbreeding depression is high in a self‐incompatible perennial herb population but absent in a self‐compatible population showing mixed mating

High inbreeding depression is thought to be one of the major factors preventing evolutionary transitions in hermaphroditic plants from self‐incompatibility (SI) and outcrossing toward self‐compatibility (SC) and selfing. However, when selfing does evolve, inbreeding depression can be quickly purged, allowing the evolution of complete self‐fertilization. In contrast, populations that show intermediate selfing rates (a mixed‐mating system) typically show levels of inbreeding depression similar to those in outcrossing species, suggesting that selection against inbreeding might be responsible for preventing the transition toward complete self‐fertilization. By implication, crosses among populations should reveal patterns of heterosis for mixed‐mating populations that are similar to those expected for outcrossing populations. Using hand‐pollination crosses, we compared levels of inbreeding depression and heterosis between populations of Linaria cavanillesii (Plantaginaceae), a perennial herb showing contrasting mating systems. The SI population showed high inbreeding depression, whereas the SC population displaying mixed mating showed no inbreeding depression. In contrast, we found that heterosis based on between‐population crosses was similar for SI and SC populations. Our results are consistent with the rapid purging of inbreeding depression in the derived SC population, despite the persistence of mixed mating. However, the maintenance of outcrossing after a transition to SC is inconsistent with the prediction that populations that have purged their inbreeding depression should evolve toward complete selfing, suggesting that the transition to SC in L. cavanillesii has been recent. SC in L. cavanillesii thus exemplifies a situation in which the mating system is likely not at an equilibrium with inbreeding depression.     

Quantitative genetic variation in a population of Crepis tectorum subsp. pumila (Asteraceae)

Quantitative genetic variation was assessed in a population of Crepis tectorum subsp. pumila , a winter annual confined to calcareous grassland on the Baltic island of öland (SE Sweden). Plants from 40 maternal sibships were grown in a greenhouse and scored for a large number of traits representing all stages of the life cycle. The study included several characters that have been subject to ecotypic differentiation as well as traits known to be under current selection. Highly significant family differences were found for all but one character, suggesting that past selection was too weak to eliminate the genetic variability of characters presumed to be adaptive and there is a potential for further adaptive change in most traits. Two additional traits treated as qualitative were also found to differ significantly among families. A parallel cultivation experiment showed that the extent of population divergence in a quantitative trait was positively correlated with the amount of inter- family variation, implying stability of the relative variability for substantial periods of time, a possible reflection of phenotypic constraints being expressed both within and between populations. Additional data indicated that genetic trade-offs among traits under simultaneous selection, year-to- year variation in selection in combination with a long-lived seed bank, and genotype × environment interactions, could prevent the erosion of genetic variability in some characters connected with fitness.     

Lethal and sublethal effects of thiacloprid on survival,growth and reproduction of Helicoverpa armigera (Lepidoptera: Noctuidae)

The cotton bollworm Helicoverpa armigera (Hübner) is the most destructive pest of cotton, tomato and chickpea in Iran. In this study, the lethal and sublethal effects of thiacloprid were evaluated against cotton bollworm under laboratory condition at 26?±?1?°C, 70?±?5% RH and a photoperiod of 16:8 (L:D). Bioassay experiments were conducted on first larval instars by mixing the insecticide dilutions with artificial diet. The LC₅₀ value of thiacloprid was 329?mg a.i./l. Sublethal effects of LC₃₀ concentration of thiacloprid was studied on biological parameters. In the study of sublethal effects, thiacloprid at LC₃₀ concentration significantly increased larval and pupal developmental times and reduced adults longevity compared with control but showed no significant effects on fecundity of cotton bollworm. Sublethal effects of thiacloprid also significantly reduced pupal weight compared with control. In general, sublethal effects studies showed that thiacloprid had adverse effects on biological parameters of the pest. Thus, our data suggest that thiacloprid had moderate potential against cotton bollworm.     

Floral display and pollination success in Senecio jacobaea (Asteraceae): Interactive effects of head and corymb size

The self-sterile Senecio jacobaea (Asteraceae) presents its rayed heads in large, compound inflorescences (corymbs). I examined the role of head and corymb size in pollinator attraction, and whether the positive effect of intact rays (if any) depends on the size of the corymb. Using female fertility as a measure of pollination success, I assessed the performance of stems representing four experimentally produced character combinations: (1) few heads without rays, (2) many heads without rays, (3) few heads with rays, and (4) many heads with rays. The proportion of flowers setting fruit was higher for intact stems (treatments 2, 4) than for stems on which the majority of the heads had been removed (treatments 1, 3), suggesting selection for maximum inflorescence production. By contrast, experimental removal of all rays had a relatively weak negative effect on fruit set, with few-headed stems (treatment 1) experiencing a greater reduction than stems with many heads (treatment 2). These results suggest that clusters of heads produce a synergistic effect on pollinator attraction, allowing plants to maintain high visitation rates even if there are drastic reductions in the basic attraction units. Hence, the number of heads and the attractiveness of the individual heads interacted in their effect on pollination success. Fruit set per flower differed greatly between sites and was positively correlated with plant density.     

Effect of cross proximity on progeny fitness in a rare and a common species of Eupatorium (Asteraceae)

Offspring from matings between near neighbors may exhibit lower fitness relative to offspring from more distant matings due to spatial structuring of populations resulting from limited dispersal of pollen and seed. This response, which can be interpreted as inbreeding depression, is studied in the rare species, Eupatorium resinosum, and a closely related congener, E. perfoliatum, through the use of hand pollinations representing three distance classes (near-within a population, far-within a population, and between populations) and an assay of the offspring in an experimental plot. Early traits such as seed mass and first-year stem length were not significantly affected by the cross type, although they were affected by maternal parentage. Size and reproduction in the second field season increased with increased pollen donor distance from the maternal plant. Cross type was significant for many traits in the second field season, indicating inbreeding depression in crosses of neighbors (for E. resinosum) and hybrid vigor between populations (both species). This suggests that the rare species, E. resinosum, had a more spatially structured population than E. perfoliatum. The implications of these results for conservation of rare species indicate that protection of habitats sufficient for large populations is necessary to maintain genetic diversity since each population likely consists of many smaller subpopulations.     

Hidden deleterious genetic factors affecting post-meiotic viability in zygospore progeny of a unicellular haplontic alga, mating group A of the Closterium ehrenbergii species complex (Chlorophyta)

In a haplontic green alga, mating group A of the Closterium ehrenbergii Meneghini ex Ralfs species complex, viability of meiotic progeny was studied by isolating two gone cells from a single germinating zygospore. In F₁ progeny of a cross between mating-type plus M-16-4a and mating-type minus M-16-4b, studied in six independent experiments, percentage survivals varied little from 86 to 96 with a mean of 93 ± 1.4 SE. In F₂ progenies of crosses among eight mating-type plus and eight mating-type minus F₁ clones of the M-16-4a · M-16-4b cross, percentage survival varied considerably from 24 to 100, with a mean of 70.8 ± 2.2. In B₁ progenies of the above eight mating-type plus F₁ clones, survival values were significantly different between backcrosses to the recurrent M-16-4b (range = 32–83, mean ± SE = 58.3 ± 6.8) and backcrosses to a genetically unrelated mating-type minus, R-13-20, (85–97, 92 ± 1.6). Also in B₁ progenies of the above mating-type minus F₁ clones, survival values were significantly different between backcrosses to the recurrent M-16-4a (56–90, 68.3 ± 4,4) and backcrosses to a genetically unrelated mating-type plus, R-13-131 (78–93, 86.1 ± 1.6). Clearly, viabilities of meiotic progeny differed considerably between outbreedings (M-16-4a × M-16-4b, and F, clones × R-13-20 or R-13-131) and inbreedings (F₂ and F₁ clones × M-16-4a, or M-16-4b). These data suggest the presence of hidden deleterious genetic factors that may reduce viability of zygospore progeny if inbred between a pair of wild-type strains from the normally outbreeding mating group A of the C. ehrenbergii species complex.     

Inter-populational variation,but no-annual variation within populations,in terms of reproductive size and genetic structure in a monocarpic perennial herb,Cardiocrinum cordatum var. glehnii

Cardiocrinum cordatum var. glehnii (Liliaceae) is a monocarpic perennial herb living in temperate broad-leaved deciduous forests. In the present study we examined the sizes (basal diameter of the stem and flower numbers) of flowering individuals and genetic diversity using microsatellite loci of 23 populations of C. cordatum var. glehnii in Hokkaido, Japan, over 2 years (2009 and 2010). As a result, we found both the basal stem diameter and the number of flowers varied widely among the populations. However, although the sizes of flowering individuals differed among the populations, these were very stable in each population and in each year. In addition, for genetic diversity, the same trends (i.e. wide variation among the populations but non-annual variation) were detected.