DNA barcodes for discriminating the medicinal plant Isatis indigotica Fort. (Cruciferae) and its adulterants

Isatis indigotica Fort. (Cruciferae) is a biennial medicinal plant. In order to protect the decreasing natural genetic resources of I. indigotica, three candidate DNA barcodes (ITS2, trnL-F and rbcL) were employed to establish an accurate and effective identification system for I. indigotica. The results demonstrated that all three candidate DNA barcodes have performed very well in I. indigotica. The interspecific genetic distances were obviously greater than the intraspecific distance among I. indigotica as indicated by ITS2, trnL-F and rbcL. Sequence alignment analysis of I. indigotica genotypes revealed that four SNPs (54, 108, 146 and 181 bp) located in ITS2, three (2, 30, 709 bp) in trnL-F and one (531 bp) in rbcL, respectively. UPGMA phylogenetic tree constructed from trnL-F and rbcL could allote I. indigotica to the correct corresponding genus, whereas rbcL could not distinguish I. indigotica from its adulterants. Meanwhile, UPGMA tree of ITS2 could accurately identify I. indigotica from its adulterants according to the corresponding species. Consequently, it can be concluded that ITS2 is a more suitable and accurate DNA barcode for identifying I. Indigotica and its adulterants than trnL-F and rbcL.     

低温胁迫时间对4种幼苗生理生化及光合特性的影响

以盐肤木(Rhus chinensis)、假连翘(Duranta repens)、老鸭嘴(Thunbergia erecta)和葛藤(Pueraria lobata)4种幼苗为试验材料,研究了人工模拟下的低温胁迫环境(6℃)对幼苗叶片生理生化及光合特性的影响.结果表明:(1)随低温胁迫的延长,假连翘幼苗的叶绿素含量先升后降,其余3种幼苗持续下降,低温解除后均显著回升;4种幼苗的脯氨酸含量持续上升或波动;葛藤幼苗的可溶性蛋白质含量先升后降,其余幼苗显著上升,且低温解除后有所增加;4种幼苗叶片可溶性糖含量以及丙二醛含量呈增加趋势,SOD活性持续上升或先升后降.低温解除后,盐肤木幼苗的SOD活性略有上升,其余幼苗显著下降.(2)随低温胁迫的延长,4种幼苗的净光合速率(Pn)、气孔导度(Gs)、蒸腾速率(Tr)均持续下降,假连翘的胞间CO2浓度(Ci)持续上升,其余幼苗先降后升.低温解除后4种幼苗叶片Pn、G、Tr均有不同程度的回升,Ci有不同程度的下降.低温胁迫和恢复48 h期间,4种幼苗的脯氨酸、可溶性糖、可溶性蛋白质含量的增加和SOD活性的稳定或增加,减轻了幼苗叶片细胞的膜脂过氧化程度,维持了细胞膜的完整性,是幼苗对低温胁迫适应性反应的重要调节机制.恢复48 h时的Pn、Gs和Tr均有不同程度的回升,Ci有不同程度的下降,说明4种幼苗有一定的抗寒能力.(3)用主成分分析法分别对生理生化指标和光合生理指标进行分析,均得出4种幼苗的抗寒性顺序为葛藤＞盐肤木＞老鸭嘴＞假连翘,这一结果可为采矿石废弃地生态恢复的植物筛选提供科学依据.     

A Model of Photoperiod × Temperature Interaction Effects on Plant Development

The recent whole-plant research reviewed suggests the commonly applied paradigms about vernalization and photoperiodism should be replaced. A simple equation based on new paradigms predictively models with excellent fit the published days to flowering of at least six plant species. The paradigm that the response to photoperiod of the days to flowering (DTF) of crop plants is revealed adequately by comparing a range of photoperiods at just one temperature should be replaced with the following concepts. There is a base (lowest) temperature below which photoperiod gene activity does not occur, and, when the temperature is high enough to allow activity, there is always a photoperiod × temperature × genotype interaction effect on the days to flowering. Similarly, the paradigm that vernalization gene activity occurs at low temperature and promotes development should be replaced as follows. Vernalization gene activity occurs only if the temperature is above a base (lowest) temperature that allows activity of the vernalization gene(s), and this activity delays development to flowering. Development to flowering is accelerated by low-temperature vernalization, because the low temperature prevents vernalization gene activity, thereby preventing delay of the DTF. The phenomena called long-day (LD) vernalization and short-day (SD) vernalization are reinterpreted as follows. The apparent replacement by short or long daylength of a requirement for low-temperature vernalization is actually a replacement by the low temperature of a requirement for long or short day. Just as true low-temperature vernalization results from prevention of vernalization gene activity, these SD and LD promotions of the DTF occur because the photoperiod gene activity is prevented by the low temperature. Rather than requiring an environment that induces flowering, an inherent capability for rapid development to flowering is expressed, if there is no delay of the DTF by the activity of either or both of the vernalization and photoperiod gene(s). All the above-mentioned effects of temperature are due to the Q₁₀ effect on the specified photoperiod or vernalization gene activity. The effect of thermal time (due to the accumulated growing degree days) is the integrated Q₁₀ effect on all additional genes that partially control the rate of development to the reproductive stage.     

The regulatory role of vernalization in the expression of low-temperature-induced genes in wheat and rye

Low temperature is one of the primary stresses limiting the growth and productivity of wheat (Triticum aestivum L.) and rye (Secale cereale L.). Winter cereals low-temperature-acclimate when exposed to temperatures colder than 10°C. However, they gradually lose their ability to tolerate below-freezing temperatures when they are maintained for long periods of time in the optimum range for low-temperature acclimation. The overwinter decline in low-temperature response has been attributed to an inability of cereals to maintain low-temperature-tolerance genes in an up-regulated state once vernalization saturation has been achieved. In the present study, the low-temperature-induced Wcs120 gene family was used to investigate the relationship between low-temperature gene expression and vernalization response at the molecular level in wheat and rye. The level and duration of gene expression determined the degree of low-temperature tolerance, and the vernalization genes were identified as the key factor responsible for the duration of expression of low-temperature-induced genes. Spring-habit cultivars that did not have a vernalization response were unable to maintain low-temperature-induced genes in an up-regulated condition when exposed to 4°C. Consequently, they were unable to achieve the same levels of low-temperature tolerance as winter-habit cultivars. A close association between the point of vernalization saturation and the start of a decline in the Wcs120 gene-family mRNA level and protein accumulation in plants maintained at 4°C indicated that vernalization genes have a regulatory influence over low-temperature gene expression in winter cereals.     

Production and cytogenetic characterization of intertribal somatic hybrids between <Emphasis Type="Italic">Brassica napus</Emphasis> and <Emphasis Type="Italic">Isatis indigotica</Emphasis> and backcross progenies

Intertribal somatic hybrids between Brassica napus (2n = 38, AACC) and a dye and medicinal plant Isatis indigotica (2n = 14, II) were obtained by fusions of mesophyll protoplasts. From a total of 237 calli, only one symmetric hybrid (S2) and five asymmetric hybrids (As1, As4, As6, As7 and As12) were established in the field. These hybrids showed some morphological variations and had very low pollen fertility. Hybrids S2 and As1 possessed 2n = 52 (AACCII), the sum of the parental chromosomes, and As12 had 2n = 66 (possibly AACCIIII). Hybrids As4, As6 and As7 were mixoploids (2n = 48–62). Genomic in situ hybridization analysis revealed that pollen mother cells at diakinesis of As1 contained 26 bivalents comprising 19 from B. napus and 7 from I. indigotica and mainly showed the segregation 26:26 at anaphase I (AI) with 7 I. indigotica chromosomes in each polar group. Four BC₁ plants from As1 after pollinated by B. napus resembled mainly B. napus in morphology but also exhibited some characteristics from I. indigotica. These plants produced some seeds on selfing or pollination by B. napus. They had 2n = 45 (AACCI) and underwent pairing among the I. indigotica chromosomes and/or between the chromosomes of two parents at diakinesis. All hybrids mainly had the AFLP banding patterns from the addition of two parents plus some alterations. B. napus contributed chloroplast genomes in majority of the hybrids but some also had from I. indigotica. Production of B. napus–I. indigotica additions would be of considerable importance for genome analysis and breeding.     

Engineering selectivity of Cutibacterium acnes phages by epigenetic imprinting

Cutibacterium acnes (C. acnes) is a gram-positive bacterium and a member of the human skin microbiome. Despite being the most abundant skin commensal, certain members have been associated with common inflammatory disorders such as acne vulgaris. The availability of the complete genome sequences from various C. acnes clades have enabled the identification of putative methyltransferases, some of them potentially belonging to restriction-modification (R-M) systems which protect the host of invading DNA. However, little is known on whether these systems are functional in the different C. acnes strains. To investigate the activity of these putative R-M and their relevance in host protective mechanisms, we analyzed the methylome of six representative C. acnes strains by Oxford Nanopore Technologies (ONT) sequencing. We detected the presence of a 6-methyladenine modification at a defined DNA consensus sequence in strain KPA171202 and recombinant expression of this R-M system confirmed its methylation activity. Additionally, a R-M knockout mutant verified the loss of methylation properties of the strain. We studied the potential of one C. acnes bacteriophage (PAD20) in killing various C. acnes strains and linked an increase in its specificity to phage DNA methylation acquired upon infection of a methylation competent strain. We demonstrate a therapeutic application of this mechanism where phages propagated in R-M deficient strains selectively kill R-M deficient acne-prone clades while probiotic ones remain resistant to phage infection.