Spatial genetic relationships in a population of the Japanese wood mouse Apodemus argenteus

Space-related relationships between individuals were investigated during the breeding season in a natural population of Apodemus argenteus (Temminck) by using the catch-mark-release method and microsatellite DNA markers. Several overlapping patterns of home ranges in breeding males and females were observed. Although this species is thought to be monogamous, DNA analysis revealed polygynous mating. In adults, relatedness between sexes was generally low and no apparent spatial genetic structure was observed. In juveniles, however, relatedness and geographical distance be-tween individuals were significantly negatively correlated. The relatedness between adult females decreased with distance, whereas there was not such a correlation in males. Long-distance movements were observed in current-year-born males. The differences in spatial genetic structure between adults and juveniles are thought to be produced by male-biased natal dispersal. An erratum to this article can be found at     

Effects of larval density on a natural population of Culex restuans (Diptera: Culicidae): no evidence of compensatory mortality

1. This study investigated the effects of strong density dependence on larval growth, development, and survival of the mosquito Culex restuans (Theobald). It also tested the hypothesis that density reduction early in larval development could result in as many or more individuals surviving to adulthood (compensation or over‐compensation, respectively), or increased reproductive performance via rapid development and greater adult size. 2. In a field study of a natural population of C. restuans, the effects of a 75% lower density on percentage survivorship to adulthood, number of adults, development time, adult size, adult longevity, and size dependent fecundity were tested. 3. No evidence was found of compensation or over‐compensation in adult production, or of effects of lower density on percentage survivorship. Low density yielded significant increases in adult size, adult longevity, and size‐dependent fecundity, and a decrease in development time. 4. Estimated per‐capita population growth rate was significantly greater in the low‐density treatment than in the high‐density treatment. It is inferred that this difference was due to greater per‐capita resources, which increased female size and fecundity, and reduced development time. Greater per‐capita population growth could therefore result from early mortality of larvae, meaning that the hydra effect, which predicts greater equilibrium population with, as opposed to without, extrinsic mortality, may be possible for these mosquitoes.     

Isolation of tannin-degrading bacteria isolated from feces of the Japanese large wood mouse, Apodemus speciosus, feeding on tannin-rich acorns

Bacteria with tannase activity were isolated from the feces of the Japanese large wood mouse, Apodemus speciosus. They were largely classified into two groups: Gram-positive cocci and Gram-positive bacilli. Genotypic analysis using a species-specific PCR assay as well as biochemical tests identified all cocci as Streptococcus gallolyticus. A PCR assay targeting a genus-specific sequence in the 16S/23S rDNA spacer region and additional 16S rDNA sequencing indicated that the bacilli belong to the genus Lactobacillus, with L. animalis and L. murinus being closely related taxa. Subsequent estimation of guanine-plus-cytosine content, amplified ribosomal DNA restriction analysis, and DNA/ DNA hybridization assay confirmed that the bacilli are homologous to each other but different from L. animalis or L. murinus. Consequently, a novel species of the genus Lactobacillus may be proposed. To date, this study is the first to report on the isolation of tannase-positive bacteria from the feces of a rodent species. These bacteria may play an essential role for the host organism in digesting tannin-rich acorns available in their natural habitats, thereby endowing them with a greater ecological advantage.     

Delayed density dependence and oscillatory population dynamics in overlapping-generation systems of a seed beetle Callosobruchus chinensis: matrix population model

Long-term experimental systems with overlapping generations using a seed beetle, Callosobruchus chinensis, were maintained by providing 5 g of azuki beans (Vigna angularis) in two different renewal intervals: either 7 days or 10 days. The 7-day-renewal system (system 1) showed oscillatory dynamics with a constant periodic cycle of ca. 7 weeks. More stable population dynamics were seen in the 10-day-interval system (system 2). Short-term experiments showed that survivorship of adults increased with higher adult density, and that the survival rate of adults up to the age of 7 days was much higher than up to 10 days of age. In addition, the per capita production of hatched eggs by females which had survived for 7 days increased with increasing density experienced by the females. Females aged 10 days rarely laid eggs which hatched. We constructed a matrix population model based on either 1 week for system 1 or 10 days for system 2. The model included five stages in system 1: the hatched egg, the final instar larva, the pupa, the young adult and the old adult. Four stages were incorporated in the model for system 2: the young instar larva, the pupa, the young adult, and the old adult. Logistic-difference equations were applied to formulate both overcompensatory density dependence in the hatched-egg production by adults and undercompensatory response in the larval development up to the pupa. The survivorship of young adults to the old stage and the per capita hatched-egg productivity of the old females followed a linear regression against the young adult density. Inside-bean processes were adjusted to be equivalent in the two models, irrespective of the resource renewal intervals. The model predicted that system 1 would oscillate for a long time but that system 2 would rapidly converge to the equilibrium point. Multiplicative effects of both the delayed density dependence through interstage restraint effects and the overcompensatory density dependence in hatched-egg production generated various dynamic patterns ranging from a quickly disappearing damped oscillation to stable limit cycles in system 1. The relationship between resource renewal cycles and delayed density dependence was discussed based on these simulations.     

A population study of the japanese wood mouse,Apodemus speciosus (Mammalia: Muridae), with reference to its social behavior

The role of social behavior on the population regulation of the Japanese wood mouse, Apodemus speciosus, was studied in the Ashu Experimental Forest of Kyoto University by monthly trapping and direct observation on the social behavior at the artificial feeding site. The census was carried out from May to October in 1974 and 1975, and the direct observation in June, August and October, 1975. In the study area, the Japanese wood mouse has two breeding seasons in a year: in spring and in autumn. Minimum survival rate was high in the non-breeding season and low in the breeding season. It was negatively correlated to the number of sexually active adults in both sexes. Home ranges of females tended to be mutually exclusive, and female residents prevented the settlement of female immigrants. On the other hand, home ranges of males overlapped largely and males had a straight social hierarchy. Subordinate males tended to disappear more often than dominant males did, but male residents did not hinder the settlement of male immigrants. Males may regulate their number by driving out the subordinate males, while females by spacing behavior.     

Assessing the impact of density dependence in field populations of Aedes aegypti

Although many laboratory studies of intra-specific competition have been conducted with Ae. aegypti, there have been few studies in natural environments and none that examined density dependence in natural containers at normal field densities. Additionally, current mathematical models that predict Ae. aegypti population dynamics lack empirically-based functions for density-dependence. We performed field experiments in Tapachula, Mexico, where dengue is a significant public health concern. Twenty-one containers with natural food and water that already contained larvae were collected from local houses. Each container was divided in half and the naturally occurring larvae were apportioned in a manner that resulted in one side of the container (high density) having four times the density of the second side (low density). Larvae were counted and pupae were removed daily. Once adults emerged, wing span was measured to estimate body size. Density had a significant impact on larval survival, adult body size, and the time taken to transition from 4(th) instar to pupation. Increased density decreased larval survival by 20% and decreased wing length by an average of 0.19 mm. These results provide a starting point for a better understanding of density dependence in field populations of Ae. aegypti.     

Restricted dispersal reduces the strength of spatial density dependence in a tropical bird population

Spatial processes could play an important role in density-dependent population regulation because the disproportionate use of poor quality habitats as population size increases is widespread in animal populations-the so-called buffer effect. While the buffer effect patterns and their demographic consequences have been described in a number of wild populations, much less is known about how dispersal affects distribution patterns and ultimately density dependence. Here, we investigated the role of dispersal in spatial density dependence using an extraordinarily detailed dataset from a reintroduced Mauritius kestrel (Falco punctatus) population with a territorial (despotic) breeding system. We show that recruitment rates varied significantly between territories, and that territory occupancy was related to its recruitment rate, both of which are consistent with the buffer effect theory. However, we also show that restricted dispersal affects the patterns of territory occupancy with the territories close to release sites being occupied sooner and for longer as the population has grown than the territories further away. As a result of these dispersal patterns, the strength of spatial density dependence is significantly reduced. We conclude that restricted dispersal can modify spatial density dependence in the wild, which has implications for the way population dynamics are likely to be impacted by environmental change.     

Species abundance is jointly determined by functional traits and negative density dependence in a subtropical forest in southern China

植物物种多度受功能性状和负密度依赖共同影响——以中国南亚热带黑石顶森林样地为例 影响植物群落中植物物种多度的因素较多,确定关键影响因素及阐明其具体机制一直是群落生态学的研究重点之一。目前确定性的影响因素主要有两大类：植物功能性状和负密度依赖。功能性状通过影响植物的竞争能力、资源的获取效率、对环境的适应能力等方面进而影响植物的多度;负密度依赖表现在同种或异种植物个体在空间上聚集,特异性的寄主(病原菌、昆虫等)传播容易导致植物个体(主要为幼苗和小树)死亡,种群发生自疏,进而影响植物的多度。到目前为止,单一探究植物功能性状或负密度依赖对植物多度影响机制的研究已有大量报道,而将两者结合来探讨对植物多度的影响的工作相对较少。为了更深入地探索影响植物多度的机制,本研究中我们综合分析了功能性状与负密度依赖对植物多度的影响。研究地点为广东省黑石顶亚热带森林50 ha大样地;功能性状方面选取了叶面积(LA)、比叶面 积(SLA)、叶片干物质含量(LDMC)、叶片氮含量(LNC)和最大电子传输速率(ETR_max);植物物种所受负密度依赖强度通过构建小树在样地两次普查期间的存活状况受邻体密度影响的层次贝叶斯模型计算;通过结构方程模型构建功能性状-负密度依赖-物种多度的内在联系框架。结构方程模型结果显示,物种多度受功能性状和负密度依赖共同作用,其中功能性状对物种多度的影响包括直接作用和通过负密度依赖的间接作用。具体来说,SLA对多度的影响包括直接和间接两种;LDMC和LNC仅间接影响物种多度;LA和ETR_max对多度只有直接影响;负密度依赖与物种多度之间存在直接的负相关关系,说明多度较高的物种受到的负密度依赖效应更强。结构方程模型对物种多度差异的解释度达到20%。以上结果表明,黑石顶植物多度分布是功能性状与负密度依赖共同作用的结果;比叶面积在所研究的因素中贡献最大。该项工作有助于提高我们对亚热带森林植物常见种和稀有种分布格局的理解。     

Density dependence in a recovering osprey population: demographic and behavioural processes

1. Understanding how density-dependent and independent processes influence demographic parameters, and hence regulate population size, is fundamental within population ecology. We investigated density dependence in growth rate and fecundity in a recovering population of a semicolonial raptor, the osprey Pandion haliaetus [Linnaeus, 1758], using 31 years of count and demographic data in Corsica. 2. The study population increased from three pairs in 1974 to an average of 22 pairs in the late 1990s, with two distinct phases during the recovery (increase followed by stability) and contrasted trends in breeding parameters in each phase. 3. We show density dependence in population growth rate in the second phase, indicating that the stabilized population was regulated. We also show density dependence in productivity (fledging success between years and hatching success within years). 4. Using long-term data on behavioural interactions at nest sites, and on diet and fish provisioning rate, we evaluated two possible mechanisms of density dependence in productivity, food depletion and behavioural interference. 5. As density increased, both provisioning rate and the size of prey increased, contrary to predictions of a food-depletion mechanism. In the time series, a reduction in fledging success coincided with an increase in the number of non-breeders. Hatching success decreased with increasing local density and frequency of interactions with conspecifics, suggesting that behavioural interference was influencing hatching success. 6. Our study shows that, taking into account the role of non-breeders, in particular in species or populations where there are many floaters and where competition for nest sites is intense, can improve our understanding of density-dependent processes and help conservation actions.     

宝天曼国家级自然保护区落叶阔叶林密度制约效应对树木存活的影响

密度制约对物种共存起着重要作用。随着密度制约效应研究的深入, 亲缘关系较近的物种间表现出的密度制约效应逐渐被人们认识。本研究基于2009和2014年对宝天曼1 ha落叶阔叶林样地的2次调查数据, 利用广义线性混合模型分析了重要值排名前11位的物种不同邻域尺度的密度制约效应对不同径级(小径级(1 cm ≤ DBH < 5 cm)、中径级(5 cm ≤ DBH < 10 cm)、大径级(DBH ≥ 10 cm))目标个体存活的影响。研究表明: (1) 5年间样地中DBH ≥ 1 cm的所有个体的年均死亡率和增员率分别为5.85%和0.27%; (2)有5个物种的个体存活率与同种邻体个体数及同种邻体胸高断面积显著负相关; (3)小径级个体的存活在5 m的邻域范围内受同种密度制约和谱系密度制约的影响都很显著; 中径级个体在3个尺度上受到的密度制约和谱系密度制约的影响都不大; 大径级个体在7.5 m、10 m邻域范围内受谱系密度制约影响显著。结果表明, 同种密度制约和谱系密度制约效应对宝天曼落叶阔叶林不同生长阶段的树木个体影响不同。     

Heterogeneity and density dependence in a field study of a tephritid-parasitoid interaction

Abstract.

• 1 The spatial distributions of two tephritid flies (Urophora stylata (Fabricius) and Terellia serratulae L.) attacking thistle flower heads and the levels of parasitism from their associated parasitoid guilds were studied over a 7-year period.
• 2 Using these data it is possible to seek both temporal, density dependent relationships between average levels of parasitism and host density per generation, and also any spatial patterns of parasitism contributing to stability that may be operating within the same field system.
• 3 Parasitism by the two most important generalist parasitoids of T.serratulae is a direct function of average T.serratulae density per year. There is little evidence of any stabilizing heterogeneity arising from the spatial distribution of parasitism within generations.
• 4 Temporal density dependence of Urophora stylata cannot be confirmed from the 7 years of study but there is evidence of spatial heterogeneity which may have an important effect on the dynamics of the host population.

     

Influence of density dependence on the detection of trends in unobserved life-history stages

In many species, certain life-history stages are difficult or impossible to observe directly, hampering management. Often more easily observed stages are monitored instead, but the extent to which various forms of uncertainty cloud our ability to discern trends in one critical life-history stage by observing another is poorly studied. We develop a stochastic simulation model for threatened California coho salmon Oncorhynchus kisutch to examine how well trends in one stage can be detected from observations of another. In particular, we use the model to examine the effect density dependence has on our ability to detect trends. We present a structural form for the transition between life-history stages that encompasses the common functional forms: density independence, Beverton–Holt compensatory density dependence and Ricker-type over-compensation. In small populations, such density dependence is often ignored. However, it may in fact be extremely important, for example if population decline was caused by a decrease in carrying capacity. Our results show that density dependence in any life-history transition significantly reduces the ability to detect trends in abundance; critical but inaccessible stages cannot generally be studied by monitoring more easily observed stages, especially if density dependence is present for any life-cycle transition.     

Effect of founding events on coat colour polymorphism of Apodemus speciosus (Rodentia: Muridae) on the Izu Islands

To infer the evolutionary mechanism of phenotypic variation among isolated island populations, we investigated coat colour and genetic variation in the large Japanese field mouse (Apodemus speciosus) on the Izu Islands (Ohshima, Niijima, Kouzushima, and Miyakejima). Coat colour in the most remote population (Miyakejima) was unique and significantly darker than that in the other populations. Ohshima that is closest to the source population showed variation in coat colour within its population. Phylogeographical analyses using mitochondrial and microsatellite markers suggested that the island populations (except Kouzushima) were founded sequentially from the closest Ohshima to remote Niijima and Miyakejima during or before the penultimate interglacial period. Secondary gene flow from the source population was rare and occurred only for the closest (Ohshima) population. In addition, we found that an amino acid mutation in the Agouti signalling protein gene (Asip) was associated with coat colour variation among the island populations. The mutation was rare in the source population but completely fixed in the Miyakejima population. The phenotypic and genetic variation suggested that severe reduction of genetic variation and changes in allele frequency as a result of sequential colonization (i.e. the founder effect) had significant effects on colour polymorphism. The findings of the present study suggest that the founder effect, in addition to natural selection, facilitated the morphological changes below the species level over a relatively long time scale. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 522–535.     

Population structure of the large Japanese field mouse, Apodemus speciosus (Rodentia: Muridae), in suburban landscape, based on mitochondrial D-loop sequences

Genetic structure of the large Japanese field mouse populations in suburban landscape of West Tokyo, Japan was determined using mitochondrial DNA control region sequence. Samples were collected from six habitats linked by forests and green tract along the Tama River, and from two forests segregated by urban areas from those continuous habitats. Thirty-five haplotypes were detected in 221 animals. Four to eight haplotypes were found within each local population belonging to the continuous landscape. Some haplotypes were shared by two or three adjacent local populations. On the other hand, two isolated habitats were occupied by one or two indigenous haplotypes. Significant genetic differentiation between all pairs of local populations, except for one pair in the continuous habitats, was found by analysis of molecular variance (amova). The geographical distance between habitats did not explain the large variance of pairwise F(ST)-values among local populations. F(ST)-values between local populations segregated by urban areas were higher than those between local populations in the continuous habitat, regardless of geographical distance. The results of this study demonstrated quantitatively that urban areas inhibit the migration of Apodemus speciosus, whereas a linear green tract along a river functions as a corridor. Moreover, it preserves the metapopulation structure of A. speciosus as well as the corridors in suburban landscape.     

Long‐term persistence,density dependence and effects of climate change on rosyside dace (Cyprinidae)

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Patterns of density dependence in growth,reproduction and survival in the invasive freshwater snail Pomacea canaliculata in Japanese rice fields

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Variation in the strength of inbreeding depression across environments: Effects of stress and density dependence

In what types of environments should we expect to find strong inbreeding depression? Previous studies indicate that inbreeding depression, δ, is positively correlated with the stressfulness of the environment in which it is measured. However, it remains unclear why stress, per se, should increase δ. To our knowledge, only “competitive stress” has a logical connection to δ. Through competition for resources, better quality (outbred) individuals make the environment worse for lower quality (inbred) individuals, accentuating the differences between them. For this reason, we expect inbreeding depression to be stronger in environments where the fitness of individuals is more sensitive to the presence of conspecifics (i.e., where fitness is more density dependent). Indeed, some studies suggest a role for competition within environments, but this idea has not been tested in the context of understanding variation in δ across environments. Using Drosophila melanogaster, we estimated δ for viability in 22 different environments. These environments were simultaneously characterized for (1) stressfulness and (2) density dependence. Although stress and density dependence are moderately correlated with each other, inbreeding depression is much more strongly correlated with density dependence. These results suggest that mean selection across the genome is stronger in environments where competition is intense, rather than in environments that are stressful for other reasons.     

Effects of group size and group density on trade-offs in resource selection by a group-territorial central-place foraging woodpecker

Trade-offs in resource selection by central-place foragers are driven by the need to balance the benefits of selecting resources against the costs of travel from the central place. For group-territorial central-place foraging birds, trade-offs in resource selection are likely to be complicated by a competitive advantage for larger groups at high group density that may limit accessibility of high-quality distant resources to small groups. We used the group-territorial, central-place foraging Red-cockaded Woodpecker Leuconotopicus borealis (RCW) as a case study to test predictions that increases in group density lead to differences in foraging distances and resource selection for groups of different sizes. We used GPS tracking and LiDAR-derived habitat data to model effects of group size on foraging distances and selection for high-quality pines (≥ 35.6 cm diameter at breast height (dbh)) and lower quality pines (25.4–35.6 cm dbh) by RCW groups across low (n = 14), moderate (n = 10) and high group density (n = 10) conditions. At low and moderate group density, all RCW groups selected distant high-quality pines in addition to those near the central place because competition for resources was low. In contrast, at high group density, larger groups travelled further to select high-quality pines, whereas smaller groups selected high-quality pines only when they were close to the central place and, conversely, were more likely to select lower quality pines at greater distances from the central place. Selection for high-quality pines only when close to the cavity tree cluster at high group density is important to long-term fitness of small RCW groups because it allows them to maximize benefits from both territorial defence and selecting high-quality resources while minimizing costs of competition. These relationships suggest that intraspecific competition at high group density entails substantive costs to smaller groups of territorial central-place foragers by limiting accessibility of distant high-quality foraging resources.