The effect of island area on body size in a primate species from the Sunda Shelf Islands

Aim  We examine the effect of island area on body dimensions in a single species of primate endemic to Southeast Asia, the long-tailed macaque ( Macaca fascicularis ). In addition, we test Allen's rule and a within-species or intraspecific equivalent of Bergmann's rule (i.e. Rensch's rule) to evaluate body size and shape evolution in this sample of insular macaques.
Location  The Sunda Shelf islands of Southeast Asia.
Methods  Body size measurements of insular macaques gathered from the literature were analysed relative to island area, latitude, maximum altitude, isolation from the mainland and other islands, and various climatic variables using linear regression.
Results  We found no statistically significant relationship between island area and body length or head length in our sample of insular long-tailed macaques. Tail length correlated negatively with island area. Head length and body length exhibited increases corresponding to increasing latitude, a finding seemingly consistent with the expression of Bergmann's rule within a single species. These variables, however, were not correlated with temperature, indicating that Bergmann's rule is not in effect. Tail length was not correlated with either temperature or increasing latitude, contrary to that predicted by Allen's rule.
Main conclusions  The island rule dictating that body size will covary with island area does not apply to this particular species of primate. Our study is consistent with results presented in the literature by demonstrating that skull and body length in insular long-tailed macaques do not, strictly speaking, conform to Rensch's rule. Unlike previous studies, however, our findings suggest that tail-length variation in insular macaques does not support Allen's rule.     

EVOLUTION OF SPRINT SPEED IN LACERTID LIZARDS: MORPHOLOGICAL,PHYSIOLOGICAL, AND BEHAVIORAL COVARIATION

Organismal performance abilities occupy a central position in phenotypic evolution; they are determined by suites of interacting lower-level traits (e.g., morphology and physiology) and they are a primary focus of natural selection. The mechanisms by which higher levels of organismal performance are achieved during evolution are therefore fundamentally important for understanding correlated evolution in general and coadaptation in particular. Here we address correlated evolution of morphological, physiological, and behavioral characteristics that influence interspecific variation in sprint speed in a clade of lacertid lizards. Phylogenetic analyses using independent contrasts indicate that the evolution of high maximum sprinting abilities (measured on a photocell-timed racetrack) has occurred via the evolution of (1) longer hind limbs relative to body size, and (2) a higher physiologically optimum temperature for sprinting. For ectotherms, which experience variable body temperatures while active, sprinting abilities in nature depend on both maximum capacities and relative performance levels (i.e., percent of maximum) that can be attained. With respect to temperature effects, relative performance levels are determined by the interaction between thermal physiology and thermoregulatory behavior. Among the 13 species or subspecies of lizards in the present study, differences in the optimal temperature for sprinting (body temperature at which lizards run fastest) closely matched interspecific variation in median preferred body temperature (measured in a laboratory photothermal gradient), indicating correlated evolution of thermal physiology and thermal preferences. Variability of the preferred body temperatures maintained by each species is, across species, negatively correlated with the thermal-performance breadth (range of body temperatures over which lizards can run relatively fast). This pattern leads to interspecific differences in the levels of relative sprint speed that lizards are predicted to attain while active at their preferred temperatures. The highest levels of predicted relative performance are achieved by species that combine a narrow, precise distribution of preferred temperatures with the ability to sprint at near-maximum speeds over a wide range of body temperatures. The observed among-species differences in predicted relative speed were positively correlated with the interspecific variation in maximum sprinting capacities. Thus, species that attain the highest maximum speeds are (1) also able to run at near-maximum levels over a wide range of temperatures and (2) also maintain body temperatures within a narrow zone near the optimal temperature for sprinting. The observed pattern of correlated evolution therefore has involved traits at distinct levels of biological organization, that is, morphology, physiology, and behavior; and trade-offs are not evident. We hypothesize that this particular trait combination has evolved in response to coadaptational selection pressures. We also discuss our results in the context of possible evolutionary responses to global climatic change.     

Genome size and karyotype length in some interstitial polychaete species of the genus Ophryotrocha (Dorvilleidae).

Interstitial polychaetes of the genus Ophryotrocha are very small, progenetic, and morphologically very similar. These worms have been widely used in evolutionary biology and sexuality studies. To have a better insight into the karyological evolution of this genus, we measured the total karyotypic length and the 2C nuclear DNA content of the nine best-known species of this genus. No interspecific differences were observed in karyotypic lengths, apart from that of O. gracilis, which was significantly greater than the karyotypic length of five of the nine species. The genome size (i.e., 1C DNA content calculated from 2C DNA content) in eight of the nine species is about 0.4 pg, irrespective of the chromosome number. A group of four gonochoric and morphologically indistinguishable species, with 2n = 6 metacentric chromosomes, appears to be heterogeneous with regard to its DNA content, because one of the species, O. macrovifera, has a genome twice the size of that of the other three species. A hermaphroditic species, O. hartmanni, has a genome three times that size. No correlation has been observed between genome size and body size, egg cell diameter, or time interval from egg fertilization to sexual maturity. The basic genome size of 0.4 pg is among the lowest recorded in invertebrates. Hypotheses about selective pressures that maintain such a low amount of nuclear DNA in this genus are discussed.     

Microsatellite evolution--a reciprocal study of repeat lengths at homologous loci in cattle and sheep

The application of microsatellites in evolutionary studies requires an understanding of the patterns governing their evolution in different species. The finding that homologous microsatellite loci are longer, i.e., containing more repeat units, in human and in other primates has been taken as evidence for directional microsatellite evolution and for a difference in the rate of evolution between species. However, it has been argued that this finding is an inevitable consequence of biased selection of longer-than-average microsatellites in human, because cloning procedures are adopted to generate polymorphic and, hence, long markers. As a test of this hypothesis, we conducted a reciprocal comparison of the lengths of microsatellite loci in cattle and sheep using markers derived from the bovine genome as well as the ovine genome. In both cases, amplification products were longer in the focal species, and loci were also more polymorphic in the species from which they were originally cloned. The crossing pattern that we found suggests that interspecific length differences detected at homologous microsatellite loci are the result of biased selection of loci associated with cloning procedures. Hence, comparisons of microsatellite evolution between species are flawed unless they are based on reciprocal analyses or on genuinely random selection of loci with respect to repeat length.      

The large genome constraint hypothesis: evolution, ecology and phenotype

BACKGROUND AND AIMS: If large genomes are truly saturated with unnecessary 'junk' DNA, it would seem natural that there would be costs associated ith accumulation and replication of this excess DNA. Here we examine the available evidence to support this hypothesis, which we term the 'large genome constraint'. We examine the large genome constraint at three scales: evolution, ecology, and the plant phenotype. SCOPE: In evolution, we tested the hypothesis that plant lineages with large genomes are diversifying more slowly. We found that genera with large genomes are less likely to be highly specious -- suggesting a large genome constraint on speciation. In ecology, we found that species with large genomes are under-represented in extreme environments -- again suggesting a large genome constraint for the distribution and abundance of species. Ultimately, if these ecological and evolutionary constraints are real, the genome size effect must be expressed in the phenotype and confer selective disadvantages. Therefore, in phenotype, we review data on the physiological correlates of genome size, and present new analyses involving maximum photosynthetic rate and specific leaf area. Most notably, we found that species with large genomes have reduced maximum photosynthetic rates - again suggesting a large genome constraint on plant performance. Finally, we discuss whether these phenotypic correlations may help explain why species with large genomes are trimmed from the evolutionary tree and have restricted ecological distributions. CONCLUSION: Our review tentatively supports the large genome constraint hypothesis.     

Genome size of 14 species of fireflies (Insecta,Coleoptera, Lampyridae)

Eukaryotic genome size data are important both as the basis for comparative research into genome evolution and as estimators of the cost and difficulty of genome sequencing programs for non-model organisms.In this study,the genome size of 14 species of fireflies (Lampyridae) (two genera in Lampyrinae,three genera in Luciolinae,and one genus in subfamily incertae sedis) were estimated by propidium iodide (PI)-based flow cytometry.The haploid genome sizes of Lampyridae ranged from 0.42 to 1.31 pg,a 3.1-fold span.Genome sizes of the fireflies varied within the tested subfamilies and genera.Lamprigera and Pyrocoelia species had large and small genome sizes,respectively.No correlation was found between genome size and morphological traits such as body length,body width,eye width,and antennal length.Our data provide additional information on genome size estimation of the firefly family Lampyridae.Furthermore,this study will help clarify the cost and difficulty of genome sequencing programs for non-model organisms and will help promote studies on firefly genome evolution.     

Evolutionary history of elongation and maximum body length in moray eels (Anguilliformes: Muraenidae)

Body shape and size are important axes of organismal diversification. The elongate body form has evolved repeatedly in disparate vertebrate clades, and is associated with a variety of maximum body lengths. We used a time‐calibrated phylogeny for 40 species of moray eels to analyse the evolution of elongation and the morphological mechanisms underlying variation in body shape and maximum body length. We find that body elongation in morays evolves independently of elongation of the vertebral column. In contrast, maximum body length evolves by a different mechanism: through region‐specific increases in vertebral number, elongation of individual vertebral centra, and postembryonic somatic growth. We reconstruct an ancestral moray eel and provide evidence for accelerated morphological evolution in three highly elongate species that are associated with a burrowing lifestyle. We compare these patterns with those described for other vertebrates, and show that body shape and body length may evolve independently of each other and (in the case of shape) of the vertebral column. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2013, 109 , 861–875.     

REEXAMINING THE RELATIONSHIP BETWEEN BODY SIZE AND TONAL SIGNALS FREQUENCY IN WHALES: A COMPARATIVE APPROACH USING A NOVEL PHYLOGENY

A negative relationship between cetacean body size and tonal sound minimum and maximum frequencies has been demonstrated in several studies using standard statistical approaches where species are considered independent data points. Such studies, however, fail to account for known dependencies among related species—shared similarity due to common ancestry. Here we test these hypotheses by generating the most complete species level cetacean phylogeny to date, which we then use to reconstruct the evolutionary history of body size and standard tonal sounds parameters (minimum, maximum, and center frequency). Our results show that when phylogenetic relationships are considered the correlation between body size (length or mass) and minimum frequency is corroborated with approximately 27% of the variation in tonal sound frequency being explained by body size compared to 86% to 93% explained when phylogenetic relationships are not considered. Central frequency also correlates with body size in toothed whales, but for other tonal sound frequency parameters, including maximum frequency, this hypothesized correlation disappears. Therefore, constraints imposed by body size seem to have played a role in the evolution of minimum frequency but alternative hypotheses are required to explain variation in maximum frequency.     

Palaeogenomics of pterosaurs and the evolution of small genome size in flying vertebrates

The two living groups of flying vertebrates, birds and bats, both have constricted genome sizes compared with their close relatives. But nothing is known about the genomic characteristics of pterosaurs, which took to the air over 70 Myr before birds and were the first group of vertebrates to evolve powered flight. Here, we estimate genome size for four species of pterosaurs and seven species of basal archosauromorphs using a Bayesian comparative approach. Our results suggest that small genomes commonly associated with flight in bats and birds also evolved in pterosaurs, and that the rate of genome-size evolution is proportional to genome size within amniotes, with the fastest rates occurring in lineages with the largest genomes. We examine the role that drift may have played in the evolution of genome size within tetrapods by testing for correlated evolution between genome size and body size, but find no support for this hypothesis. By contrast, we find evidence suggesting that a combination of adaptation and phylogenetic inertia best explains the correlated evolution of flight and genome-size contraction. These results suggest that small genome/cell size evolved prior to or concurrently with flight in pterosaurs. We predict that, similar to the pattern seen in theropod dinosaurs, genome-size contraction preceded flight in pterosaurs and bats.     

Fish swimming stride by stride: speed limits and endurance

Summary Steadily swimming fish show a species-specific stride length and tail tip amplitude. These are constant over the entire speed range if expressed as a fraction of the body length. The speed of a fish equals the stride length times the tail beat frequency. We describe how maximum tail beat frequencies, and hence maximum swimming speeds, are related to temperature and body length.Maximum sustained swimming speeds, endurance during swimming at higher speeds, and maximum burst velocities of 27 species are compared. The rate of decline of endurance with increasing speed is either gradual or steep, with only a few cases in between Steady swimmers show the steepest decline.The published effects of temperature on endurance are not consistent.The effect of body size on the endurance curve could be investigated for two species. The maximum sustained speed decreases with increasing length, and the slope of the endurance curves steepens with increasing length with the same factor in both species. The maximum burst speed is 10 Ls^-1 on average.     

Body size estimation and evolution in metriorhynchid crocodylomorphs: implications for species diversification and niche partitioning

Metriorhynchids were a peculiar group of fully marine Mesozoic crocodylomorphs, some of which reached large body size and were probably apex predators. The estimation of their total body length in the past has proven problematic. Rigorous size estimation was provided using five complete metriorhynchid specimens, by means of regression equations derived from basicranial and femoral length against total body length. The use of the Alligator femoral regression equation as a proxy to estimate metriorhynchid total body length led to a slight underestimation, whereas cranial regression equations of extant genera resulted in an overestimation of body length. Therefore, the scaling of crania and femora to total body length of metriorhynchids is noticeably different from that of extant crocodylians, indicating that extant crocodylians are not ideal proxies for size reconstruction of extinct taxa that deviate from their semi‐aquatic morphotype. The lack of a correlation between maximum, minimum, or the range of generic body lengths with species richness demonstrates that species diversification is driven by factors other than just variation in body size. Maximum likelihood modelling also found no evidence for directionality in body size evolution. However, niche partitioning in Metriorhynchidae is mediated not only by craniodental differentiation, as shown by previous studies, but also by body size variation. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 163 , 1199–1216.     

Effects of Life Histories on Genome Size Variation in Squamata

Genome size changes significantly among taxonomic levels, and this variation is often related to the patterns shaped by the phylogeny, life histories and ecological factors. However, there are mixed evidences on the main factors affecting molecular evolution in animals.In this study, we used phylogenetic comparative analysis to investigate the evolutionary rate of genome size and the relationships between genome size and life histories(i.e.,hatchling mass, clutch size, clutches per year, age at sexual maturity, lifespan and body mass) among 199 squamata species. Our results showed that the evolutionary rate of genome size in Lacertilia was significantly faster than Serpentes. Moreover, we also found that larger species showed larger hatchling mass, more clutches per year and clutch size and longer lifespan. However, genome size was negatively associated with clutch size and clutches per year, but not associated with body mass we looked at.The findings suggest that larger species do not possess the evolution of large genomes in squamata.     

Finding Nemo’s Genes: A chromosome‐scale reference assembly of the genome of the orange clownfish Amphiprion percula

The iconic orange clownfish, Amphiprion percula, is a model organism for studying the ecology and evolution of reef fishes, including patterns of population connectivity, sex change, social organization, habitat selection and adaptation to climate change. Notably, the orange clownfish is the only reef fish for which a complete larval dispersal kernel has been established and was the first fish species for which it was demonstrated that antipredator responses of reef fishes could be impaired by ocean acidification. Despite its importance, molecular resources for this species remain scarce and until now it lacked a reference genome assembly. Here, we present a de novo chromosome‐scale assembly of the genome of the orange clownfish Amphiprion percula. We utilized single‐molecule real‐time sequencing technology from Pacific Biosciences to produce an initial polished assembly comprised of 1,414 contigs, with a contig N50 length of 1.86 Mb. Using Hi‐C‐based chromatin contact maps, 98% of the genome assembly were placed into 24 chromosomes, resulting in a final assembly of 908.8 Mb in length with contig and scaffold N50s of 3.12 and 38.4 Mb, respectively. This makes it one of the most contiguous and complete fish genome assemblies currently available. The genome was annotated with 26,597 protein‐coding genes and contains 96% of the core set of conserved actinopterygian orthologs. The availability of this reference genome assembly as a community resource will further strengthen the role of the orange clownfish as a model species for research on the ecology and evolution of reef fishes.     

Geographic variation in body size: the effects of ambient temperature and precipitation

Latitudinal trends in body size have been explained as a response to temperature- or water-related factors, which are predictors of primary production. We used the first principal component calculated from three body parameters (weight, body length and the greatest length of the skull) of a sample of mammals from Israel and Sinai to determine those species that vary in size geographically, and whether such variation is related to annual rainfall, average minimum January temperature and average maximum August temperature. We used a conservative approach to discern the effects of precipitation and temperature by applying sequential regression. Variable priorities were assigned according to their bivariate correlation with body size, except for rainfall and its interactions that entered into the model last. Eleven species (Acomys cahirinus, Apodemus mystacinus, Canis lupus, Crocidura suaveolens, Gerbillus dasyurus, Hyaena hyaena, Lepus capensis, Meles meles, Meriones tristrami, Rousettus aegyptius and Vulpes vulpes) of the 17 species examined varied in size geographically. In five of them, rainfall was positively related to body size, while in one species it was negatively related to it. Contrary to the prediction of Bergmann’s rule, mean minimum January temperature was positively related to body size in five species and negatively related to body size in two species (C. suaveolens and G. dasyurus). As predicted by Bergmann’s rule, maximum June temperature was negatively related to body size in three species, and positively so in one (L. capensis). Primary production, particularly in desert and semi-desert areas, is determined mainly by precipitation. The above results indicate that, in our sample, primary production has an important effect on body size of several species of mammals. This is evident from the considerable proportion of the variability in body size explained by rain. However, low ambient temperatures may slow down and even inhibit photosynthesis. Hence, the observed positive relationships between average minimum January temperature and body size in four of the six species influenced by rain further support this conclusion.     

不同生活型被子植物功能性状与基因组大小的关系

基因组大小在被子植物物种之间存在着巨大的变异, 但目前对不同生活型被子植物功能性状与基因组大小的关系缺乏统一的认识。本研究基于被子植物245科2,226属11,215个物种的基因组大小数据, 探讨了不同生活型物种种子重量、最大植株高度和叶片氮、磷含量4个功能性状与基因组大小之间的关系。结果表明, 被子植物最大植株高度和种子重量与基因组大小间的关系在草本和木本植物中存在显著差异。草本植物最大植株高度与基因组大小的关系不显著, 但种子重量与其呈极显著的正相关关系。木本植物最大植株高度与基因组大小显著负相关, 但种子重量与其关系不显著。木本植物叶片氮含量与基因组大小呈显著正相关, 但其他生活型植物的叶片氮、磷含量与基因组大小均无显著相关性。本研究表明被子植物功能性状与基因组大小的相关性在不同生活型间存在差异, 这为深入研究植物多种功能性状和植物生活型与基因组大小的权衡关系在植物演化和生态适应中的作用提供了重要依据。     

Microsatellite length differences between humans and chimpanzees at autosomal Loci are not found at equivalent haploid Y chromosomal Loci

When homologous microsatellites are compared between species, significant differences in mean length are often noted. A dominant cause of these length differences is ascertainment bias due to selection for maximum repeat number and repeat purity when the markers are being developed. However, even after ascertainment bias has been allowed for through reciprocal comparisons, significant length differences remain, suggesting that the average microsatellite mutation rate differs between species. Two classes of mechanism have been proposed: rapid evolution of enzymes involved in the generation and repair of slippage products (enzyme evolution model) and heterozygote instability, whereby interchromosomal events at heterozygous sites offer extra opportunities for mutations to occur (heterozygote instability model). To examine which of these hypotheses is most likely, we compared ascertainment bias and species length differences between humans and chimpanzees in autosomal and Y chromosomal microsatellites. We find that levels of ascertainment bias are indistinguishable, but that interspecies length differences are significantly greater for autosomal loci compared with haploid Y chromosomal loci. Such a pattern is consistent with predictions from the heterozygote instability model and is not expected under models of microsatellite evolution that do not include interchromosomal events such as the enzyme evolution model.     

Does size matter? Examining the drivers of mammalian vocalizations

Previous studies of the vocalization frequencies of mammals have suggested that it is either body mass or environment that drives these frequencies. Using 193 species across the globe from the terrestrial and aquatic environments and a model selection approach, we identified that the best‐supported model for minimum and maximum frequencies for vocalization included both body mass and environment. The minimum frequencies of vocalizations of species from all environments retained the influence of body mass. For maximum frequency however, aquatic species are released from such a trend with body mass having little constraint on frequencies. Surprisingly, phylogeny did not have a strong impact on the evolution of the maximum frequency of mammal vocalizations, largely due to the pinniped species divergence of frequency from their carnivoran relatives. We demonstrate that the divergence of signal frequencies in mammals has arisen from the need to adapt to their environment.