Quantitative genetics of a carotenoid-based color: heritability and persistent natal environmental effects in the great tit

The information content of signals such as animal coloration depends on the extent to which variation reflects underlying biological processes. Although animal coloration has received considerable attention, little work has addressed the quantitative genetics of color variation in natural populations. We investigated the quantitative genetics of a carotenoid-based color patch, the ventral plumage of mature great tits (Parus major), in a wild population. Carotenoid-based colors are often suggested to reflect environmental variation in carotenoid availability, but numerous mechanisms could also lead to genetic variation in coloration. Analyses of individuals of known origin showed that, although plumage chromaticity (i.e., color) was moderately heritable, there was no significant heritability to achromaticity (i.e., brightness). We detected multiple long-lasting effects of natal environment, with hatching date and brood size both negatively related to plumage chromaticity at maturity. Our reflectance measures contrasted in their spatiotemporal sensitivity, with plumage chromaticity exhibiting significant spatial variation and achromatic variation exhibiting marked annual variation. Hence, color variation in this species reflects both genetic and environmental influences on different scales. Our analyses demonstrate the context dependence of components of color variation and suggest that color patches may convey multiple aspects of individual state.     

Concerted Shifts in Absorption Maxima of Yellow and Red Plumage Carotenoids Support Specialized Tuning of Chromatic Signals to Different Visual Systems in Near-Passerine Birds

Recent evidence that absorption maxima (λR_min) expressed by colorful plumage pigments align to diagnostic cone sensitivities of affiliated visual systems suggests that birds employ specialized signals in relation to their color vision. However, these studies compared different pigments and clades for the violet (porphyrins in non-passerines) and ultraviolet (carotenoids in passerines) sensitive system, which confounds chemistry and phylogeny with tuning patterns. To test whether signal alignments to violet (VS) and ultraviolet (UVS) systems transcend confounding factors, parallel analyses were conducted for a diversity of near-passerines, a group in which plumage carotenoids occur in taxa with either visual system. Conventional and phylogenetically informed analyses confirmed earlier findings: short wavelength absorbing (yellow carotenoid) pigments aligned λR_min with the violet-sensitive (V) cone of VS species but with the short wavelength-sensitive (S) cone of UVS species, whereas long wavelength-absorbing (red carotenoid) pigments aligned only with the S cone of VS species. More extensive variation among VS yellow carotenoids produced λR_min alignments to cone sensitivities that differed at shorter (peaks) versus longer (overlaps) wavelengths. Ancestral trait reconstructions indicated that signals evolved to match pre-existing VS systems, but did not resolve scenarios for UVS systems. Regardless of historical details, alignments expressed a higher-level pattern in which λR_min values were blue-shifted for yellow and red carotenoids in VS compared to UVS species, a pattern opposite that expressed by receptor sensitivities between systems. Thus, generalized functional designs attributed to avian color vision allow for specialized visual communication through the development of chromatic signals suited to each perceptual system.     

Feeding behavior, toe count, and the phylogenetic relationships among alcedinine kingfishers (Alcedininae)

The pygmy kingfishers of the Old World tropics (Alcedininae) display a range of feeding behaviors, plumage types, and morphologies that have caused much taxonomic confusion in the group. We sequenced mitochondrial and nuclear genes to reconstruct a phylogenetic hypothesis for the subfamily, which was then used to examine the utility of common taxonomic characters. The phylogenetic hypothesis reveals multiple shifts between insectivory and piscivory, as well as homoplasy in bill color and plumage color. Piscivores and insectivores are interspersed across the tree, as are blue and rufous plumage types. It is apparent that reliance on these characters to delineate genera has resulted in classifications that do not describe natural groups. The sole taxonomic character examined that defines a natural division in the subfamily, toe count, is also the one generally dismissed as non-informative in the alcedinines, yet all species with a reduction in the number of toes form a clade. It is recommended that four genera be retained to describe the variation within pygmy kingfishers.     

The ecological drivers of nuptial color evolution in darters (Percidae: Etheostomatinae)

Closely related animal lineages often vary in male coloration, and ecological selection is hypothesized to shape this variation. The role of ecological selection in inhibiting male color has been documented extensively at the population level, but relatively few studies have investigated the evolution of male coloration across a clade of closely related species. Darters are a diverse group of fishes that vary in the presence of elaborate male nuptial coloration, with some species exhibiting vivid color patterns and others mostly or entirely achromatic. We used phylogenetic logistic regression to test for correlations between the presence/absence of color traits across darter species and the ecological conditions in which these species occur. Environmental variables were correlated with the presence of nuptial color in darters with colorful species tending to inhabit environments that would support fewer predators and potentially transmit a broader spectrum of natural light compared to species lacking male coloration. We also tested the color preferences of a common darter predator, largemouth bass, and found that it exhibits a strong preference for red, providing further evidence of predation as a source of selection on color evolution in darters. Ecological selection therefore appears to be an important factor in dictating the presence or absence of male coloration in this group of fishes.     

Functional diversity in the color vision of cichlid fishes

Background  

Color vision plays a critical role in visual behavior. An animal's capacity for color vision rests on the presence of differentially sensitive cone photoreceptors. Spectral sensitivity is a measure of the visual responsiveness of these cones at different light wavelengths. Four classes of cone pigments have been identified in vertebrates, but in teleost fishes, opsin genes have undergone gene duplication events and thus can produce a larger number of spectrally distinct cone pigments. In this study, we examine the question of large-scale variation in color vision with respect to individual, sex and species that may result from differential expression of cone pigments. Cichlid fishes are an excellent model system for examining variation in spectral sensitivity because they have seven distinct cone opsin genes that are differentially expressed.     

Visual modelling suggests a weak relationship between the evolution of ultraviolet vision and plumage coloration in birds

Birds have sophisticated colour vision mediated by four cone types that cover a wide visual spectrum including ultraviolet (UV) wavelengths. Many birds have modest UV sensitivity provided by violet‐sensitive (VS) cones with sensitivity maxima between 400 and 425 nm. However, some birds have evolved higher UV sensitivity and a larger visual spectrum given by UV‐sensitive (UVS) cones maximally sensitive at 360–370 nm. The reasons for VS–UVS transitions and their relationship to visual ecology remain unclear. It has been hypothesized that the evolution of UVS‐cone vision is linked to plumage colours so that visual sensitivity and feather coloration are ‘matched’. This leads to the specific prediction that UVS‐cone vision enhances the discrimination of plumage colours of UVS birds while such an advantage is absent or less pronounced for VS‐bird coloration. We test this hypothesis using knowledge of the complex distribution of UVS cones among birds combined with mathematical modelling of colour discrimination during different viewing conditions. We find no support for the hypothesis, which, combined with previous studies, suggests only a weak relationship between UVS‐cone vision and plumage colour evolution. Instead, we suggest that UVS‐cone vision generally favours colour discrimination, which creates a nonspecific selection pressure for the evolution of UVS cones.     

Physical Alignments Between Plumage Carotenoid Spectra and Cone Sensitivities in Ultraviolet-Sensitive (UVS) Birds (Passerida: Passeriformes)

Among birds, single cone sensitivities responsible for color vision appear surprisingly conserved even though chromatic signals vary greatly. Thus it is widely held that avian visual signal and receptor characteristics are rarely aligned. Analysis of a diverse passerine clade (Passerida) with characteristically ultraviolet-sensitive (UVS) vision revealed that plumage carotenoid reflectance spectra matched cone maximal sensitivities at several levels: (1) plumage carotenoid reflectance minima and maxima in aggregate aligned with the four UVS single cones; (2) the corresponding reflectance features of yellow (hydroxy- and ε-keto) and red (3- and 4-β-keto) carotenoid classes aligned with different combinations of cones; (3) pairs of reflectance features (e.g. one minimum and one maximum) of each carotenoid class aligned with pairs of (opponent) cones that evoke chromatic perception; (4) passerid plumage carotenoids aligned more closely to their own (UVS) visual system than to the distinctive homologous cone classes of the violet-sensitive system found in other birds. The ubiquitous occurrence of plumage carotenoids ipso facto demonstrates that alignments of avian visual signals and receptors are widespread, and provides novel evidence that carotenoids are important to avian communication. Moreover, alignment of different physical spectra to different cone combinations in a fixed receptor array provides a straightforward mechanism that accommodates signal diversity within the context of a relatively conserved visual system. The distinct patterns of variation and alignment observed for yellow versus red carotenoids further suggest that these pigment classes convey different physical aspects of content, which may foster carotenoid-based plumage diversity through signal design trade-offs.     

Color categorization and color constancy in a neural network model of V4

We develop a neural network model that instantiates color constancy and color categorization in a single unified framework. Previous models achieve similar effects but ignore important biological constraints. Color constancy in this model is achieved by a new application of the double opponent cells found in the blobs of the visual cortex. Color categorization emerges naturally, as a consequence of processing chromatic stimuli as vectors in a four-dimensional color space. A computer simulation of this model is subjected to the classic psychophysical tests that first uncovered these phenomena, and its response matches psychophysical results very closely.     

The reconstruction of the perceptual spaces of brightness and color on the basis of visual evoked potentials and their comparison with the data from behavioral trials

The visual evoked potentials to a change in color stimuli were studied. The amplitude of the N85 component was correlated with color discrimination. In cases when the brightness of one color was fixed and that of the other one changed, the amplitude dynamics of N85 was V-shaped with the minimum corresponding to the point of equal brightness of both colors. The N85 amplitude in this point serves as a measure of discrimination between stimuli chromaticity. The perceptual color space in rabbit (possessing two cone pigments) was constructed in accordance with the amplitudes of N85 to color change. This space represented a hypersphere in the four-dimensional Euclidean space. The perceptual spaces for brightness and color reconstructed on the basis of conditioning probabilities and N85 amplitudes evoked by replacement of colored and achromatic stimuli were shown to coincide. This suggests the common mechanism of the vector color coding.     

Quantitative genetics of plumage color: lifetime effects of early nest environment on a colorful sexual signal

Phenotypic differences among individuals are often linked to differential survival and mating success. Quantifying the relative influence of genetic and environmental variation on phenotype allows evolutionary biologists to make predictions about the potential for a given trait to respond to selection and various aspects of environmental variation. In particular, the environment individuals experience during early development can have lasting effects on phenotype later in life. Here, we used a natural full‐sib/half‐sib design as well as within‐individual longitudinal analyses to examine genetic and various environmental influences on plumage color. We find that variation in melanin‐based plumage color – a trait known to influence mating success in adult North American barn swallows (Hirundo rustica erythrogaster) – is influenced by both genetics and aspects of the developmental environment, including variation due to the maternal phenotype and the nest environment. Within individuals, nestling color is predictive of adult color. Accordingly, these early environmental influences are relevant to the sexually selected plumage color variation in adults. Early environmental conditions appear to have important lifelong implications for individual reproductive performance through sexual signal development in barn swallows. Our results indicate that feather color variation conveys information about developmental conditions and maternal care alleles to potential mates in North American barn swallows. Melanin‐based colors are used for sexual signaling in many organisms, and our study suggests that these signals may be more sensitive to environmental variation than previously thought.     

Mosaic model for color vision

Color vision in man is based upon three different cone types, which are quite likely arranged in a semi-ordered array in the retina. The model proposes that this ordering is an inherent part of the genetic code that sets up the color vision mechanism, and that the specification for each cone type (red, green or blue) also includes a specification for its place in the larger structure of which it is a part. One possible positional mosaic for the three cone types is proposed, together with its degeneracies into anomalous (red-green) color mechanisms. Assuming only one fixed probability for a degenerate transition, the population frequencies for color anomalies predicted from the model agree closely with the observed frequencies.     

Darker where cold and wet: Australian birds follow their own version of Gloger's rule

Gloger's rule is usually interpreted as predicting darker coloured animals in warmer and more humid/vegetated regions. The relative importance of temperature and rainfall or vegetation is however unclear, and often only one variable is tested at a time, mainly through proxies. Here, I assess the predictions of Gloger's rule for interspecific achromatic plumage variation (dark to light variation) for an entire avifauna (551 species of Australian landbirds). I tested the effects of climatic variables (temperature and rainfall) and vegetation structure on plumage reflectance at species and assemblage level (100 × 100 km cells), controlling for phylogenetic relatedness and spatial autocorrelation. To assess the robustness of these results I compared observed results with those of a null distribution of effects obtained from repeatedly simulating random plumage reflectance evolution on the phylogeny. At both the species and assemblage level, darker coloured birds were found in wetter and colder regions and in more densely vegetated habitats. Simulations confirm results at the species level and the effect of temperature at the assemblage level, but rainfall and vegetation effects at the assemblage level fall within the distribution of simulated effects and should be interpreted with care. Interspecific colour variation in Australian birds supports Gloger's rule for rainfall/vegetation, but shows the opposite pattern for temperature. Darker colours in wet and vegetated environments are consistent with the role of melanin pigmentation in preventing feather degradation by bacteria, but also with background‐matching for camouflage. Darker plumage might be beneficial in colder regions or detrimental in warmer regions if it affects thermoregulation, a selective force often only assumed to be of importance for ectotherms. The data highlight the need to test the generality of biogeographic rules across levels and at broad scale. Experimental work is needed to confirm the mechanisms linking plumage achromatic variation to climate.     

RECONSTRUCTING THE EVOLUTION OF SEXUAL DICHROMATISM: CURRENT COLOR DIVERSITY DOES NOT REFLECT PAST RATES OF MALE AND FEMALE CHANGE

Males of sexually dimorphic species often appear more divergent among taxa than do females, so it is often assumed that evolutionary changes have occurred primarily in males. Yet, sexual dimorphisms can result from historical changes in either or both of the sexes, and few previous studies have investigated such patterns using phylogenetic methods. Here, we describe the evolution of male and female plumage colors in the grackles and allies (Icteridae), a songbird clade with a broad range in levels of sexual dichromatism. Using a model of avian perceptual color space, we calculated color distances within and among taxa on a molecular phylogeny. Our results show that female plumage colors have changed more dramatically than male colors in the evolutionary past, yet male colors are significantly more divergent among species today. Historical increases in dichromatism have involved changes in both sexes, whereas decreases in dichromatism have nearly always involved females evolving rapidly to look like males. Dichromatism is also associated with mating system in this group, with monogamous taxa tending to exhibit relatively low levels of sexual dichromatism. Our findings suggest that, despite appearances, female plumage evolution plays a more prominent role in sexual dichromatism than is generally assumed.     

Plumage evolution in relation to light environment in a novel clade of Neotropical tanagers

Molecular phylogenetic analyses have greatly changed Neotropical avian systematics in the past couple of decades. These new phylogenies provide the necessary framework to study the ecology and natural history of species in the region in an evolutionary context. This study addresses the systematics of Poospiza, Compsospiza, Hemispingus, Thlypopsis, and eight monotypic genera, which form a strongly supported and novel clade within the tanagers. We find Poospiza, Hemispingus, and Thlypopsis to be polyphyletic, confirm or reject relationships proposed based on morphology and life history, and describe novel relationships among these and the monotypic genera. The diversity of plumage, habitat, and geography throughout the clade allows us to test hypotheses of plumage evolution in relation to light environment. We find that overall plumage brightness best fits a model that includes selective regimes based on open versus closed habitats and foraging strata, while plumage measures describing color diversity and chroma best fit a model that only includes selective regimes based on open and closed habitats.     

Complex distribution of avian color vision systems revealed by sequencing the SWS1 opsin from total DNA

To gain insights into the evolution and ecology of visually acute animals such as birds, biologists often need to understand how these animals perceive colors. This poses a problem, since the human eye is of a different design than that of most other animals. The standard solution is to examine the spectral sensitivity properties of animal retinas through microspectophotometry-a procedure that is rather complicated and therefore only has allowed examinations of a limited number of species to date. We have developed a faster and simpler molecular method, which can be used to estimate the color sensitivities of a bird by sequencing a part of the gene coding for the ultraviolet or violet absorbing opsin in the avian retina. With our method, there is no need to sacrifice the animal, and it thereby facilitates large screenings, including rare and endangered species beyond the reach of microspectrophotometry. Color vision in birds may be categorized into two classes: one with a short-wavelength sensitivity biased toward violet (VS) and the other biased toward ultraviolet (UVS). Using our method on 45 species from 35 families, we demonstrate that the distribution of avian color vision is more complex than has previously been shown. Our data support VS as the ancestral state in birds and show that UVS has evolved independently at least four times. We found species with the UVS type of color vision in the orders Psittaciformes and Passeriformes, in agreement with previous findings. However, species within the families Corvidae and Tyrannidae did not share this character with other passeriforms. We also found UVS type species within the Laridae and Struthionidae families. Raptors (Accipitridae and Falconidae) are of the violet type, giving them a vision system different from their passeriform prey. Intriguing effects on the evolution of color signals can be expected from interactions between predators and prey. Such interactions may explain the presence of UVS in Laridae and Passeriformes.     

Floral color change: a widespread functional convergence

Ontogenetic color changes in fully turgid flowers are widespread throughout the angiosperms, and in many cases are known to provide signals for pollinators. A broad survey of flowering plants demonstrates that such color changes appear in at least 77 diverse families. Color-changing taxa occur commonly within what are considered derived lineages, and only rarely in early or primitive groups. The pattern of distribution of floral color change across orders, families, genera, and species demonstrates that the occurrence of the phenomenon within a group is not simply a result of phylogenetic history. Color changes can affect the whole flower or they can be localized, affecting at least nine floral parts or regions. The scale of color change (localized or whole-flower) is broadly correlated with the type of pollinator that characteristically visits the plant. Color changes can come about through seven distinct physiological mechanisms, involving anthocyanins, carotenoids, and betalains. Color changes due to appearance of anthocyanin are the most common, occurring in 68 families. Floral color change has clearly evolved independently many times, most likely in response to selection by visually oriented pollinators, and reflects a widespread functional convergence within the angiosperms.     

Multiple signaling in a variable environment: expression of song and color traits as a function of ambient sound and light

Many animals communicate using more than one signal, and several hypotheses exist to explain the evolution of multiple signals. However, these hypotheses typically assume static selection pressures, and previous work has not addressed how spatial and temporal environmental variation can shape variation in signaling systems. In particular, environmental variability, such as ambient lighting or noise, may affect efficacy (e.g., detectability/perception by receivers) of signals. To examine how signal expression varies intraspecifically as a function of habitat characteristics, we evaluated relationships between spatial environmental variation and song and plumage color expression in a tropical songbird, the Red‐throated Ant‐tanager (Habia fuscicauda) in Panama. We recorded male ant‐tanager song, plucked feathers to measure coloration, and quantified the acoustic and light environments from each male's territory. In addition, we took several morphological measurements from each male to assess the potential information content of song and plumage color. We found that males with redder and more saturated crown plumage occurred on darker territories, and males that sang shorter and lower frequency songs occurred on noisier territories. We also found that more colorful males tended to sing longer and lower frequency songs. Finally, we found that song and color correlated similarly with male morphology (e.g., tarsus length, body mass). Altogether, these results indicate that spatial variation in the environment is related to male coloration and song, and that males might be optimizing color and song expression for their particular territorial environment.     

The reliability of achromatic displays is island-dependent in nocturnal Storm Petrels

Nocturnal birds rely on achromatic visual signals to assess rivals and potential mates, but variation in the expression of these displays has been understudied. Here we use UV-visible reflectance spectrometry to study colour variation and the potential signalling function of the dark brown chest and white rump plumage – a colour pattern conspicuously exhibited during twilight courtship displays – in nocturnal Mediterranean Storm Petrels Hydrobates pelagicus melitensis from three islands with different exposures to predation and human disturbance. Human activity may increase perceived predation risk and thus affect activity budgets and the physiological stress response, with possible consequences on the relationship between individual body condition and plumage coloration. We found that chest and especially rump feathers reflected in the ultraviolet (UV) but there was no evidence of sexual dichromatism. However, we found support for a male-specific signalling role of plumage coloration. Indeed, chest yellow–red chroma and rump UV chroma were positively related to body condition in males, but only in the two islands representing the poorer environmental conditions. Therefore, environmental variability can potentially modify the reliability of achromatic displays, with possible consequences on sexual selection patterns in a nocturnal bird.     

Revisiting the condition‐dependence of melanin‐based plumage

Support against the condition‐dependence of melanin plumage signals has relied on data from species exhibiting both melanin‐ and carotenoid‐based plumage ornaments. As the mechanisms leading to variation in carotenoid‐ and melanin‐based plumage differ fundamentally, these systems may not be ideal to assess the condition‐dependence of melanin signals. Instead, we hypothesized that melanin‐plumage is more likely to signal condition in purely achromatic species. We performed a meta‐analysis reviewing evidence for condition‐dependent melanic plumage: we compared the net effect size for the relationship between melanin traits and condition in species that are achromatic versus species that also display a carotenoid‐based trait. Our results indicate that melanin plumage is condition‐dependent in species of both plumage types. Contrarily to our prediction, this finding suggests that melanin ornament condition‐dependence is not conditional on the context of other ornaments within a species. Instead, melanin ornaments should be viewed as potential condition‐dependent signals in all species.     

Computation of color and brightness differences by neurons in the rabbit visual cortex

Changes in activity of 54 neurons in the rabbit visual cortex evoked by the replacement of eight color and eight achromatic stimuli in pairs were analyzed. The diffused stimuli generated by color SVGA monitor were used in the experiments. The earliest response of phasic neurons (50-90 ms after the replacement) was strongly correlated with differences between stimuli in color or intensity. This response ("the signal of differences") was used as a basis of a matrix (8 x 8) constructed for each neuron. Such matrices included mean numbers of spikes per second in responses to changes of different stimuli pairs. All matrices were subjected to factor analysis, and the basic axes (the main factors) of sensory spaces were revealed. It was found that 16 neurons (30%) detected only achromatic differences between stimuli. Perceptual spaces of these neurons were two-dimensional with brightness and darkness orthogonal axes. The spaces of 12 neurons (22%) were four-dimensional with two chromatic and two achromatic axes. The structure of the perceptual space reconstructed from neuronal spikes was similar to the space calculated from the early VEP components recorded under similar conditions and to another space reconstructed on the basis of rabbit's instrumental learning. The fundamental coincidence of color spaces revealed by different methods may reflect the general principle of vector coding in the visual system and suggests the coexistence of two independent cortical mechanisms of the detection of chromatic and achromatic differences.