Virio- and bacterioplankton of a small river: Influence that viruses have on the mortality of heterotrophic bacteria

The spatial distribution of virio- and bacterioplankton and the role that viruses play in heterotrophic bacteria elimination was studied in the small Il’d’ River (Rybinskoe Reservoir tributary, Upper Volga). The bacterioplankton abundance and biomass constituted 3.3–19.6 (8.5 on average) million cells/ml and 501–2353 mg/m³ (1054 mg/m³ on average), respectively. The highest abundance was registered for the shallow areas under anthropogenic and zoogenic load. The virus abundance varied from 7.4 to 66.9 million particles/ml, being 30.9 million particles/ml on average. The bacteria: virus ratio was in the range of 1.2–11.0 (4.0 on average); the maximal values were registered for the deepest parts of the river. One infected bacterial cell carried up to 45 virile phages. The virus-induced mortality (VIM) was in the range of 1.1–7.8% (3.7% on average) from daily bacterial production. These data evidenced a high abundance of bacterioplankton in the studied river and an insignificant impact of virus-mediated regulation on bacterial abundance and production.     

Distribution of viruses in the water column of the ice-covered Rybinsk Reservoir and their contribution to heterotrophic bacteria mortality

Virioplankton and bacterioplankton abundance has been determined in the pelagic and littoral zones of the Rybinsk Reservoir during the ice-covered period. The role of viruses in heterotrophic bacterioplankton infection and mortality is assessed. At water temperatures between 0.3 and 0.9°C, the number of planktonic virus particles and planktonic bacteria varies from 37.1 × 10⁶ to 84.1 × 10⁶ particles/mL, (57.3 ± 2.1) × 10⁶ particles/mL on average and from 2.50 × 10⁶ to 6.11 × 10⁶ cells/mL, (3.66 ± 0.16) × 10⁶ cells/mL on average, respectively. The ratio of the virus number to the bacteria number varies from 8.8 to 27.9, being 16.5 ± 0.7 on average. Visually infected cells comprise 0.3–0.5% (1.5 ± 0.2% on average) of the total number of bacterioplankton. Infected bacterial cells contain from 5 to 107 (17 ± 4 on average) mature virus particles. The average virus-induced mortality of bacteria accounts for 13.0 ± 1.9% (variations range from 2 to 55%) of the daily bacterial production, indicating that viruses play an important role in the regulation of bacterioplankton production and abundance in the Rybinsk Reservoir during the ice-covered period.     

Structural and functional characteristics of the bacterioplankton of rivers flowing through a large city (Cherepovets,Upper Volga Region)

The structural and functional properties of the bacterioplankton in two small rivers and the Sheksna River that run through the large industrial city of Cherepovets were studied from April to October 2009–2011. The three-year average numbers and biomass of planktonic bacteria in small rivers were 18.7–18.8 million cells/mL and 3.5–4.9 g/m³, respectively; these values in the Sheksna River’s littoral zone were 15.8 million cells/mL and 2.2 g/m³. The bacterioplankton production in the small water courses exceeded that in the Sheksna River by a factor of 1.8–2.2. The contribution of bacterial filaments to the total biomass and the total bacterioplankton production increases in small polluted rivers.     

Viruses in the plankton of the Rybinsk Reservoir

The role of autochthonous viruses in the regulation of bacterioplankton abundance and production was studied in the Rybinsk Reservoir. During the ice-free period, the number of virus-like particles varied within the range of (11.0-57.4) x 10(6) particles/ml. The virus to bacterioplankton abundance ratio ranged within 3.0-9.4. From 4 to 25% of bacterioplankton was infected by phages. A single infected cell contained up to 80 mature virus particles. The phage-induced bacterioplankton mortality in different parts of the reservoir constituted 3.7-41.8% (22.5% on average) of bacterioplankton daily production. Heterotrophic flagellates grazed from 7.6 to 68.8% (27.5% on average) of the daily bacterial production. Thus, along with flagellates, viruses are an important factor controlling bacterioplankton development in the reservoir.     

Heterotrophic bacteria,zooflagellates, and ciliates in coastal waters of northeastern Black Sea

According to the parameters of density and biomass of heterotrophic bacterioplankton, waters in the ports of Novorossiysk and Tuapse were eutrophic-hypereutrophic and in the resort cities of Gelendzhik and Anapa they were hypereutrophic. The abundance of heterotrophic bacteria reached maximum values of 12.7–14.2 million cells/mL during the period of abnormally high water temperatures (August 2010) in recreational zones. Chainlike and filamentous forms (57–65%) of bacteria, which were typical for the strong coastal pollution of waters, prevailed. The abundance of zooflagellates (kinetoplastids) in semi-isolated water areas (port of Novorossiysk and Gelendzhik Bay) reached the level of highly eutrophic waters, 6.2–9.7 million ind/m³. However, the biomass of naked ciliates was 1.5 times lower than their maximum values earlier registered in coastal waters of the northeastern shelf. The peak of abundance of alien tintinnids of the genera Eutintinnus, Tintinnopsis, and Amphorellopsis, which were introduced via ballast waters of ships, was recorded in Novorossiysk Bay. The ratio of titinnids to the total abundance of ciliates increased 5 times and reached 25–40%. Protozoans developed poorly in the oil-polluted port of Tuapse and the open Anapa Bay.     

Viruses in the plankton of the Rybinsk Reservoir

The role of autochthonous viruses in the regulation of bacterioplantkon abundance and production was studied in the Rybinsk Reservoir. During the ice-free period, the number of virus-like particles varied within the range of (11.0–57.4) × 10⁶ particles/ml. The virus to bacterioplankton abundance ratio ranged within 3.0–9.4. From 4 to 25% of bacterioplankton was infected by phages. A single infected cell contained up to 80 mature virus particles. The phage-induced bacterioplankton mortality in different parts of the reservoir constituted 3.7–41.8% (22.5% on average) of bacterioplankton daily production. Heterotrophic flagellates grazed from 7.6 to 68.8% (27.5% on average) of the daily bacterial production. Thus, along with flagellates, viruses are an important factor controlling bacterioplankton development in the reservoir.     

Heterotrophic organisms and viruses in the Oka River and Cheboksary Reservoir during the abnormally hot summer of 2010

In July 2010, abnormally high water temperature (25–29°C), as well as increased biomass and phytoplankton production caused intensive development of heterotrophic bacteria and heterotrophic nanoflagellates. It was found that the abundance, biomass, and production of heterotrophic bacterioplankton, as well as the abundance and biomass of heterotrophic nanoflagellates, and the number of planktonic viruses, which were calculated on average for the reservoir under study, turned out to be higher in the years with lower water temperature (20–23°C). The virus-induced mortality of bacterioplankton in the Oka River and the Cheboksary Reservoir averaged 25.4 ± 3.4 and 22.4 ± 2.7% of the daily bacterioplankton production.     

Virus impact on heterotrophic bacterioplankton of water reservoirs

The quantitative distribution of viruses and their impact on heterotrophic bacterioplankton were studied in mesotrophic and eutrophic reservoirs of the Volga and Volga-Baltic waterway. The abundance of planktonic virus particles ranged from 9.4 × 10⁶ to 120 × 10⁶ ml⁻¹ and was from 2.5 to 9 times greater than the bacterial numbers. Production of virioplankton varied from 2.1 × 10⁶ to 132 × 10⁶ particles (ml day)⁻¹ and the population turnover time values were between 0.3 and 11.6 days. The maximum values of numbers and production of virio- and bacterioplankton were observed in the eutrophic Ivan’kovo reservoir. Distribution of the viruses in the Volga reservoirs depended to a significant degree on the number and activity of heterotrophic bacterioplankton. The infected bacteria accounted for 5.5–33.5% of the total bacterial abundance. Phages were an important factor of bacterial mortality. During July to September virus-induced bacterial mortality varied between 6.1 and 40.6% (20.2% on average) of daily bacterioplankton production.     

Planktonic viruses,heterotrophic bacteria,and nanoflagellates in fresh and coastal marine waters of the Kara Sea Basin (the Arctic)

In August–September 2009, the concentration of dissolved organic matter and quantitative distribution of virioplankton, bacterioplankton, and heterotrophic nanoflagellates were studied in the coastal waters of the Kara Sea, the fresh waters of the islands and the coasts of the sea, and the estuaries of the Ob’ and Yenisei rivers. A high positive correlation was observed between the abundances of viruses and bacteria. The frequency of visibly infected bacteria in marine waters ranged from 0.6 to 4.3% (an average of 1.6%); in the fresh waters of islands and coastline and in estuaries, it ranged from 0.3 to 3.9% (an average of 1.5%) and from 0.5 to 1.6% (an average of 1.1%) respectively. In most surveyed water bodies, the role of viruses in bacterioplankton mortality was considerably higher than that of heterotrophic flagellates.     

江苏沿岸海域浮游病毒的时空分布

在2006.7—2007.12期间,采用SYBR Green I染色-荧光显微直接计数法,对江苏沿海海域浮游病毒丰度进行了四个季度的调查,同时调查还包括细菌丰度、叶绿素a浓度。浮游病毒水平分布呈现中间高,两侧低。苏北浅滩海域病毒含量最高,最高值为47.90×106个/mL;吕泗海域最低,最低值为0.03×106个/mL。季节变化表现为冬季最高,夏季次之,春秋季相当。垂直分布也变现为明显的季节变化,除秋季外,表层浮游病毒丰度高于底层水体。浮游病毒与细菌丰度比(VBR)为0.30—180.08,平均为18.35。春季浮游病毒与叶绿素a、细菌之间均存在较强的相关性,相关系数分别为0.79和0.74(P<0.01);而在秋季,浮游病毒只与细菌有较强的相关性(r=0.79,P<0.01),这说明不同季节,浮游病毒的主要宿主会发生变化。     

深圳近海表层浮游细菌分布特征及其环境影响因素

于2015年3月、5月、8月和10月在深圳市近岸海域(珠江口、深圳湾和大亚湾)采集表层水样,利用流式细胞仪测定总浮游细菌、高DNA含量亚群细菌(HNA)、低DNA含量亚群细菌(LNA)的丰度,分析它们的时空分布特点,阐释环境因子对浮游细菌时空分布格局的影响。结果表明,珠江口、深圳湾和大亚湾海域表层浮游细菌的平均丰度依次降低,分别为3.82×10~6个/mL、7.67×10~6个/mL和3.38×10~6个/mL。珠江口海域浮游细菌丰度由远岸到近岸递增,深圳湾海域湾内各站位浮游细菌丰度差异较小,大亚湾海域浮游细菌丰度空间差异不显著(P0.05)。浮游细菌丰度时间差异主要受温度影响,空间差异主要受营养盐和叶绿素a影响。HNA亚群丰度时空差异性比LNA亚群的大,HNA亚群受温度影响显著(P0.01),而LNA亚群与温度相关性不显著(P0.05)。环境对HNA和LNA亚群丰度的影响有许多相似之处,但两者对某些环境因子有着不同的响应,说明它们在近海表层生态系统中可能扮演着部分重叠但略有不同的角色。     

The influence of viruses on bacterioplankton of the offshore and coastal parts of the Barents Sea

The viral and bacterioplankton communities of the Barents Sea were investigated using a combination of methods of electron and epifluorescence microscopy for the first time. The quantitative composition of the communities and the nature of their interactions were also determined. Our study showed that during the summer the abundance and biomass of bacterioplankton reached 0.4–4.0 × 10⁶ cells/mL and 25.09–84.21 mg/m³ in offshore waters and 0.4–1.8 × 10⁶ cells/mL and 19.63–100.19 mg/m³ in coastal waters, respectively. In both regions, the number of viruses (1.7–35.8 × 10⁶ and 14.5–32.4 × 10⁶ particles/mL) exceeded the number of bacteria by 2–31 and 13–60 times, respectively; the average viral production was 0.7510⁶ and 1.74 × 10⁶ particles/mL/day, respectively. The proportion of infected cells in the total bacterioplankton (7% on average) and virus-induced mortality of bacteria (8%) were much lower in offshore than in coastal waters (14 and 20%, respectively).     

Impact of hydrology on free-living and particle-associated microorganisms in a river floodplain system (Danube, Austria)

1. A floodplain segment of the Danube River downstream of Vienna was studied during the hydrologically most dynamic phase (spring–summer) to evaluate the significance of connection between the main channel and the floodplain segment for particle abundance and quality as well as for bacterial and viral parameters, both free‐living and attached to particles. 2. Hydrological connectivity between the main channel and its floodplain segment (expressed as water age) influenced particle abundance and quality. Polysaccharide‐containing particles [Alcian positive‐stained particles (ASP)] and protein‐containing particles [Coomassie positive‐stained particles (CSP)] each contributed a substantial fraction to total suspended solids and were both positively related to water age. ASP were about twice as abundant as CSP. 3. Water age influenced bacterial and viral abundance and the bacterioplankton productivity in the surrounding water. Free‐living bacterial abundance and their bacterial secondary production (BSP) increased continuously with water age, best described by a linear regression. Water age also significantly impacted BSP and per cell BSP of bacteria attached to particles. The abundance of attached bacteria and viruses was not influenced by water age. 4. Bacteria and viruses on particles were influenced by particle quality. Their abundance on particles was closely related to particle size. Particle‐attached bacteria accounted on average for 30.34% (± 3.09) of the total bacterial abundance. A variable and occasionally significant proportion of viruses, between 0.43% and 35.06%, were associated with particulate material. 5. Bacteria attached to particles were significantly more productive than their free‐living counterparts. Their per‐cell activity was on average 8.6 times higher than that of the free‐living fraction. 6. Hydrological connectivity between the Danube River and its floodplain is crucial not only for the exchange of water, sediment and nutrients, but also for microbiota, thus influencing microbial life, distribution and activity.     

Viruses and flagellates sustain apparent richness and reduce biomass accumulation of bacterioplankton in coastal marine waters

To gain a better understanding of the interactions among bacteria, viruses and flagellates in coastal marine ecosystems, we investigated the effect of viral lysis and protistan bacterivory on bacterial abundance, production and diversity [determined by 16S rRNA gene polymerase chain reaction (PCR) and denaturing gradient gel electrophoresis (DGGE)] in three coastal marine sites with different nutrient supplies in Hong Kong. Six experiments were set up using filtration and dilution methods to develop virus, flagellate and virus+flagellate treatments for natural bacterial populations. All three predation treatments had significant repressing effects on bacterial abundance. Bacterial production was significantly repressed by flagellates and both predators (flagellates and viruses). Bacterial apparent species richness (indicated as the number of DGGE bands) was always significantly higher in the presence of viruses, flagellates and both predators than in the predator-free control. Cluster analysis of the DGGE patterns showed that the effects of viruses and flagellates on bacterial community structure were relatively stochastic while the co-effects of predators caused consistent trends (DGGE always showed the most similar patterns when compared with those of in situ environments) and substantially increased the apparent richness. Overall, we found strong evidence that viral lysis and protist bacterivory act additively to reduce bacterial production and to sustain diversity. This first systematic attempt to study the interactive effects of viruses and flagellates on the diversity and production of bacterial communities in coastal waters suggests that a tight control of bacterioplankton dominants results in relatively stable bacterioplankton communities.     

流式细胞仪检测纳帕海高原湿地浮游病毒和浮游细菌丰度

【背景】浮游病毒是水体微生物群落中重要的组成成分,深入研究浮游病毒的时空分布有助于更好地保护和开发当地的微生物资源。【目的】对采集到的纳帕海高原湿地水样中的浮游病毒和浮游细菌进行计数,揭示纳帕海高原湿地浮游病毒的分布规律。【方法】采用流式细胞仪检测2013年12月和2014年9月纳帕海高原湿地7个水样的浮游病毒与浮游细菌丰度,并对影响浮游病毒丰度的因素,如细菌丰度、叶绿素a含量以及其他环境因子进行了相关性分析。【结果】季节分布上,雨季浮游病毒和浮游细菌丰度高于旱季;水平分布上,原水样品的浮游病毒高于湿地水和淤泥水。旱季水样的浮游病毒丰度受到细菌丰度及叶绿素a浓度的影响较大;雨季水样的浮游病毒丰度受到水体的p H值和温度的影响较大。【结论】纳帕海高原湿地的浮游病毒和浮游细菌是比较活跃的。浮游病毒丰度在不同季节、不同采样点受到细菌丰度和叶绿素a浓度等因素的不同影响。在旱季噬菌体而非噬藻体或浮游植物病毒是纳帕海高原湿地中浮游病毒的优势种群。     

Loss of Estuarine Bacteria by Viral Infection and Predation in Microcosm Conditions

The bacterioplankton density in Ria de Aveiro, a shallow estuarine ecosystem, varied in the broad range of 1.9-10.6 109 cells L-1. The range of values was about 2 times higher in brackish water than in marine water. At high tide bacterial abundance was 2-3 times lower than at low tide. The overall variation in virioplankton was in the range of 2.4-25.0 1010 particles L-1. Brackish water was about 2 times richer in viral particles than the marine water. Near low tide the virioplankton was 2-3 times higher that at high tide. Viral density followed the pattern of bacterial abundance (it explained 40% of virioplankton variation). The viruses to bacterium ratio varied, throughout tidal cycles, by a factor of about 10 establishing the range 4.7-55.6 (average 17.6). This ratio was rather similar in the two estuarine zones. We compared the effects of infection and predation on the control of bacterioplankton size in the two zones of the estuary. The approach to this question was conducted in experimental microcosms, set up in six combinations of plankton variables affecting the presence/absence of predators, virus-to-bacterium ratio (10-fold increase), virus-to-bacterium distance (2.2-fold increase), and bacterial growth rate. The results showed that predation was similar, in a percent basis, in marine (69%) and brackish water (73%). Viral infection was, however, higher in brackish water (59%) than in the marine water (36%). We conclude that the bacterioplankton along the salinity gradient evolves under biological pressures that are in different balance in the marine and brackish water zones. The effect of viral lysis on bacterial communities with enhanced growth (after yeast extract addition) was masked even when the initial ratio was 10-fold greater than in the natural samples. The high density of the virioplankton did not preclude the large and rapid increase in bacterial density. We suggest that the dynamics of the equilibrium between bacteria and viruses in the environment is driven to higher numerical levels during periods of intensive bacterial growth. On the contrary, at low bacterial growth rates the temporarily increased virus-to-bacterium ratio may drive the equilibrium to its lowest levels.     

Functional Characteristics of Bacterioplankton with Reference to Its Aggregation in Water Bodies of Different Types

The functional characteristics of bacterioplankton have been studied with reference to its aggregation in water bodies of different types. Several methods were used for calculation of the total numbers of bacteria and proportion of aggregated cells. Analysis of the experimental data has shown a relationship between the functional characteristics of bacterioplankton, such as bacterial production, destruction of organic matter, and energy coefficient, and the proportion of aggregated bacteria. It has been shown that as this proportion increases, the production per cell and energy coefficients also increase.     

Influence of salt marsh on bacterial activity in two estuaries with different hydrodynamic characteristics (Ria de Aveiro and Tagus Estuary)

The influence of salt marsh on estuarine bacterioplankton was investigated in two estuaries with different hydrodynamic characteristics (Ria de Aveiro and Tagus Estuary). In the Ria de Aveiro, bacteria in the flood water overlying the marsh were two times more abundant and five to six times more active than in the main channel. In the Tagus Estuary, bacterial abundance was similar in flooding and channel water, but bacterial activity was up to two times higher in the main channel. The two salt marshes have distinct influences on estuarine bacterioplankton abundance and activity. In the Ria de Aveiro, salt marsh enhanced estuarine bacterial communities, increasing their size and stimulating their activity. By contrast, the salt marsh in the Tagus Estuary does not seem to increase the bacterial abundance and production in the channel water. These distinct influences may be explained by the hydrodynamic characteristics of the salt marshes, which were confirmed by the hydrodynamic model implemented for both systems.     

Phage Bacteriolysis, Protistan Bacterivory Potential, and Bacterial Production in a Freshwater Reservoir: Coupling with Temperature

Phage abundance and infection of bacterioplankton were studied from March to November 2003 in the Sep Reservoir (Massif Central, France), together with temperature, chlorophyll, bacteria (abundance and production), and heterotrophic nanoflagellates (abundance and potential bacterivory). Virus abundance (VA) ranged from 0.6 to 13 × 10¹⁰ viruses l⁻¹, exceeding bacterial abundance (BA) approximately sixfold on average. In terms of carbon, viruses corresponded to up to 25% of bacterial biomass. A multiple regression model indicated that BA was the best predictor for VA (R² = 0.75). The frequency of infected bacteria (estimated from the percentage of visibly infected cells) varied from 1% to 32% and was best explained by a combination of temperature (R² = 0.20) and bacterial production (R² = 0.25). Viruses and flagellates contributed about equally to bacterial mortality. Both factors destroyed 55% of bacterial production, with a shift from phage bacteriolysis in early spring to protistan bacterivory in late summer. The vertical differences in most of the biological variables were not significant, contrasting with the seasonal differences (i.e., spring vs. summer-autumn). All biological variables under study were indeed significantly coupled to temperature. We regarded this to be the consequence of the enhanced discharge of the reservoir in 2003 (compared to previous years). This substantially weakened the stability and the thermal inertia of the water column, thereby establishing temperature as a stronger forcing factor in setting the conditions for optimal metabolic activity of microbial communities.     

Does virus-induced lysis contribute significantly to bacterial mortality in the oxygenated sediment layer of shallow oxbow lakes?

Despite the recognition that viruses are ubiquitous components of aquatic ecosystems, the number of studies on viral abundance and the ecological role of viruses in sediments is scarce. In this investigation, the interactions between viruses and bacteria were studied in the oxygenated silty sediment layer of a mesotrophic oxbow lake. A long-term study (13 months) and a diel study revealed that viruses are a numerically important and dynamic component of the microbial community. The abundance and decay rates ranged from 4.3 x 10(9) to 7.2 x 10(9) particles ml of wet sediment(-1) and from undetectable to 22.2 x 10(7) particles ml(-1) h(-1), respectively, and on average the values were 2 orders of magnitude higher than the values for the overlying water. In contrast to our expectations, viruses did not contribute significantly to the bacterial mortality in the sediment, since on average only 6% (range, 0 to 25%) of the bacterial secondary production was controlled by viruses. The low impact of viruses on the bacterial community may be associated with the quantitatively low viral burden that benthic bacteria have to cope with compared to the viral burden with which bacterial assemblages in the water column are confronted. The virus-to-bacterium ratio of the sediment varied between 0.9 and 3.2, compared to a range of 5.0 to 12.4 obtained for the water column. We speculate that despite high numbers of potential hosts, the possibility of encountering a host cell is limited by the physical conditions in the sediment, which is therefore not a favorable environment for viral proliferation. Our data suggest that viruses do not play an important role in the processing and transfer of bacterial carbon in the oxygenated sediment layer of the environment investigated.