Development of a diatom index of biotic integrity for acid mine drainage impacted streams

Acid mine drainage (AMD) resulting from extensive coal mining throughout Appalachia since the 1800s has caused a legacy of severe acid and dissolved metal loads to thousands of stream miles, which has critically impacted aquatic life and ecological attributes. Relationships of diatoms and macroinvertebrates with AMD have been established, but no index specifically designed to quantify AMD impacts using diatoms has been created, nor have the response of multiple organism groups been compared for their utility as indices assessing AMD severity.For the purpose of developing an effective assessment and management strategy for AMD impacted streams, this study created and tested a multi-metric AMD-diatom index of biotic integrity (AMD-DIBI) and compared its response to AMD severity with an already established multi-metric macroinvertebrate community index (ICI). In 2006, 41 sites in southeast Ohio were sampled that represented an AMD impact gradient and non-AMD impacted reference sites. Metrics comprising the AMD-DIBI were selected based on their responsiveness to AMD and nutrient impacts. In the following year, the AMD-DIBI and its metrics were tested on a validation dataset consisting of 18 sites in an AMD impacted watershed. Results indicated a significant correlation between AMD-DIBI and ICI scores, and both indices and all metrics were strongly correlated with water chemistry variables indicative of AMD pollution (P < 0.05). Stepwise multiple regression selected alkalinity and conductivity as most influential to AMD-DIBI (adjusted r² = 0.70) and ICI scores (adjusted r² = 0.66). Narrative classes (e.g., Poor, Fair, Good, and Excellent) defined by index scores provided effective classifications of AMD severity. When tested on the watershed scale, AMD-DIBI and its metrics very successfully quantified AMD gradients and coal mining impacts as indicated by canonical correspondence analysis. This newly developed AMD-DIBI will be very useful for assessing impairment, sensitivity, and recovery of diatom communities in streams damaged or threatened by coal mining activities. In addition, because the AMD-DIBI was very responsive to a gradient of AMD pollution, it could be used in future studies measuring the long-term status of streams and effectiveness of various remediation methods. This study highlights the responsive power of diatom-based metrics.     

Assessment of streams of the eastern United States using a periphyton index of biotic integrity

Benthic algae were collected from 272 eastern United States streams and rivers and analyzed for diatom species richness and dominance, the relative abundance of acidobiontic, eutraphentic, and motile diatoms, standing crops of chlorophyll and biomass, and alkaline phosphatase activity. These data were used to calculate a periphyton index of biotic integrity (PIBI), and values of the index were compared among reference, moderately impacted, and disturbed streams. The level of disturbance was based on stream chemistry, riparian disturbance, or a combined classification. Analyses of variance showed that PIBI was significantly higher in reference streams for all classifications. The PIBI and its metrics were correlated with many of the chemistry and habitat variables, and canonical correlation analysis revealed three significant environmental gradients which extracted 84% of the variance in the PIBI and its metrics. We used the mean 75th, 25th, and 5th percentile scores from the reference sites to set thresholds for excellent, good, fair, or poor condition. Applying these criteria to the cumulative distribution of total stream length in the region, we found that 4.3% of the stream length was in excellent condition; 20.8% in good condition; 56.4% in fair condition; and 18.5% in poor condition. The sensitivity of the PIBI and its component metrics to environmental stressors supports the use of this index for monitoring ecological conditions in streams in the eastern United States and as a tool to aid in diagnosing the causes of their impairment.     

Short-term effects of aerially-applied fire-suppressant foams on water chemistry and macroinvertebrates in streams after natural wild-fire on Kangaroo Island, South Australia

In remote areas, wild-fires often must be controlled by applying fire-retardants and suppressants dropped from small aircraft. However, impacts of these chemicals on natural stream ecosystems are poorly known. Unintentional aerial application of fire-fighting chemicals (Phos-Chek WD-881 and ForExspan S) onto two small streams during a natural wildfire on Kangaroo Island, South Australia, provided an opportunity to study the short-term effects on water chemistry and aquatic invertebrates. Within 2 weeks of application, samples of water and macroinvertebrates were collected from sites upstream of the application point, within the zone of application, and downstream where burning had been controlled on two streams. Three sites on a reference stream in the same sub-catchment that had been burned by the same fire but without application of fire-suppressants were also sampled. All sites were resampled three months later (within two weeks of the first flushing rains). There were no marked differences in water quality among the sites on the reference stream but in one of the impacted streams where flow had ceased before the fire, dissolved and total phosphorus concentrations were elevated at the site where the fire-suppressants were applied. Phosphorus concentrations were reduced 2–3-fold at this site after brief flushing by rain. Conversely, dissolved and total N and P concentrations at the other impacted stream that flowed permanently did not differ among the sites and there was no evidence for persistent changes to water quality from the applied fire-suppressant foams. Taxon richness was higher at the application and downstream sites than at upstream sites in the two impacted streams. There were also no discernible effects of the fire-suppressants on macroinvertebrate assemblage composition or taxon richness within the two streams two weeks after the chemical application or soon after flushing rains. Assemblage composition in the temporary stream was significantly different from that in the reference and the other impacted stream but also appeared unaffected by the fire-suppressants. The lack of impact on resident stream macroinvertebrates may result partly from their inherent high tolerance to the harsh physical and chemical conditions of these streams, many of which typically cease flow in summer.     

Diatom community response to an acid mine drainage gradient

Acid mine drainage (AMD) is a significant environmental issue worldwide. On the West Coast of the South Island, New Zealand, many AMD-affected streams occur within close proximity to naturally acidic streams, enabling us to compare the response of communities in naturally and anthropogenic acidified systems. We investigated epiphytic diatom communities in 39 streams along an AMD gradient that included naturally acidic and circum-neutral reference streams. There was a wide range in taxonomic richness in reference streams and those moderately impacted by AMD (8–33 taxa). Taxonomic richness was greatly reduced in severely impacted streams (1–5 taxa) at a threshold of pH 3.4 and was dominated by Pinnularia cf. acidophila (69–100% relative abundance). Community composition differed between circum-neutral reference streams and moderately and severely impacted streams. However, naturally acidic and moderately impacted streams had similar diatom communities primarily composed of Eunotia and Frustulia species. Our results indicate that diatom communities are strongly structured by pH and able to tolerate moderate conductivity and metal concentrations. This is a challenge for researchers and water managers attempting to incorporate diatoms into AMD monitoring in regions with naturally acidic streams.     

Effects of coalbed natural gas development on fish assemblages in tributary streams of the Powder and Tongue rivers

1. Extraction of coalbed natural gas (CBNG) often results in disposal of large quantities of CBNG product water, which may affect aquatic ecosystems. We evaluated the effects of CBNG development on fish assemblages in tributary streams of the Powder and Tongue rivers. We used treatment and control, impact versus reference sites comparisons, surveys of CBNG product‐water streams and in situ fish survival approaches to determine if CBNG development affected fish assemblages. 2. Several of our results suggested that CBNG development did not affect fish assemblages. Species richness and index of biotic integrity (IBI) scores were similar in streams with and streams without CBNG development, and overall biotic integrity was not related to the number or density of CBNG wells. Fish occurred in one stream that was composed largely or entirely of CBNG product water. Sentinel fish survived in cages at treatment sites where no or few fish were captured, suggesting that factors such as lack of stream connectivity rather than water quality limited fish abundance at these sites. Fish species richness did not differ significantly from 1994 to 2006 in comparisons of CBNG‐developed and undeveloped streams. Biotic integrity declined from 1994 to 2006; however, declines occurred at both impact and reference sites, possibly because of long‐term drought. 3. Some evidence suggested that CBNG development negatively affected fish assemblages, or may do so over time. Specific conductivity was on average higher in treatment streams and was negatively related to biotic integrity. Four IBI species richness metrics were negatively correlated with the number or density of CBNG wells in the catchment above sampling sites. Bicarbonate, one of the primary ions in product water, was significantly higher in developed streams and may have limited abundance of longnose dace (Rhinichthys cataractae). Total dissolved solids, alkalinity, magnesium and sulphate were significantly higher in developed streams. 4. Biological monitoring conducted before the development of CBNG, and continuing through the life of development and reclamation, together with data on the quantity, quality and fate of CBNG product water will allow robust assessment of potential effects of future CBNG development worldwide.     

Patterns of chironomid body-size distribution in an effluent-impacted river in the Eastern Cape,South Africa

Body size is an important determinant of assemblage structure in rivers and streams impacted by elevated concentrations of pollutants such as salts and metals. In the present study, because of the larger surface-area-tovolume ratio of small-bodied chironomid species compared with large-bodied species, it was hypothesised that the relative abundance of the small-bodied species would decrease at the impacted sites by elevated concentrations of total dissolved solids compared with that at the less-impacted control site. The aim of this study was to analyse and compare patterns of chironomid final instar body-size classes at impacted sites with those at the control site. Chironomid larvae were sampled seasonally from August 2009 to September 2012 from one control site and three impacted sites (Sites 2, 3 and 4) in the Swartkops River, Eastern Cape. Site 2 was impacted by diffuse pollution sources, whereas Sites 3 and 4 were impacted by wastewater effluent discharges in addition to diffuse pollution sources. Small-bodied species dominated the assemblage at the control site and declined significantly at the impacted sites, suggesting that chironomid body size responds predictably to deteriorating water quality in the Swartkops River.     

Developing and Testing Diatom Indicators for Wetlands in the Casco Bay Watershed, Maine, USA

Diatom indicators of wetland condition were developed and tested by assessing human disturbance, water chemistry, and species composition of benthic, epiphytic, and planktonic diatoms from 20 wetlands sampled for 2 years. One sample from each site was randomly selected to form a development data set, while the rest were used as the test data set. Human disturbance indicated substantial differences among wetlands in hydrologic modification, impervious surface, and potential for non-point source contamination. These landscape alterations were related to increases in pH, non-nutrient ions, and nutrients and decreases in dissolved organic carbon and water color. Pre-existing diatom indicators, calculated with autecological information from lakes and aquatic habitats, correlated highly to relevant water chemistry and human disturbance scores. Weighted average models (WAM) of Cl⁻, conductivity, pH, and alkalinity derived with the Maine development data set correlated to relevant water chemistry and human disturbance of the test wetlands. Diatom assemblage attributes that correlated with human disturbance were selected to combine into a multimetric index of biotic condition (IBC). IBCs and WAMs from benthic and epiphytic diatoms were usually more precisely related to relevant environmental factors than planktonic diatoms. These results showed that human disturbance alkalized wetlands, enriched them with nutrients, and diatom assemblages responded to these changes. Indicator development protocols for streams can be readily adapted for use in wetlands.     

Benthic diatoms as indicators of long-term changes in a watershed receiving passive treatment for acid mine drainage

Between 1995 and 2003, 15 reclamation projects using passive treatment systems were installed in a 70-km² watershed to reduce acid mine drainage (AMD) impacts from coal mining. Six stream sites were sampled for water chemistry and benthic diatoms on 15 dates from 1996 to 2005; 1 unimpacted reference stream, 4 downstream of treatment systems, and 1 AMD-impacted site with no treatment. Our objective was to determine if diatom communities have responded to restoration by comparing temporal trends at sites downstream of treatment to concurrent trends at untreated and reference sites. Water chemistry at the sites corresponded spatially to AMD sources within the watershed. All sites below treatment had a significant increase in pH. Diatom communities provided several lines of evidence that treatment had lessen AMD impacts over the 10 year study: (1) the percentage of circumneutral taxa significantly increased at 3 of the 4 sites below treatment; (2) the percentage of circumnuetral taxa averaged for all sites below treatment increased significantly; and (3) temporal changes in community composition were significantly directional for 3 of 4 treated sites, becoming progressively more similar to reference communities. This study emphasizes the importance of long-term data sets for assessing recovery of streams following large-scale restoration.     

Impact of the longitudinal and seasonal changes of the water quality on the benthic macroinvertebrate assemblages of the Andorran streams

The ecological quality of the Andorran streams was assessed in 1998-1999, based on the survey of the water chemistry and the benthic macroinvertebrate assemblages. Two types of modification of the water quality were observed in the Andorran rivers: (i) a progressive degradation along the longitudinal gradient with a chronic degradation in the lower water courses; (ii) a seasonal modification in the mid-elevation sites. Two responses of the benthic macroinvertebrate assemblages to these disturbances were observed: an extreme simplification of the composition and a change of the trophic structure of the assemblages in the more impacted sites.     

Ecogeographical tolerance range variation in aquatic macrophytes

A portion of central Canada (area B) and a smaller, soft-water area within it on the Precambrian Shield (area A) were surveyed for aquatic macrophytes in relation to eight water chemistry parameters. pH, total dissolved solids and total alkalinity appeared to be the three most important factors correlated with macrophyte distribution. T-tests indicated that species for which water chemistry affinities were not discrepant in areas A and B could be identified as specialized or unspecialized plants with respect to area A. Other species behaved quite differently in the two areas. In most cases for pH and dissolved inorganics macrophytes showed lower mean values and lower upper tolerance range limits in area A than in area B, reflecting the prevailing water chemistry values in the two areas. These results suggested that adaptation had occurred in one or both sets of populations. A number of interspecific associations were demonstrated in area A, many of which coincided with similarities in water chemistry affinities.     

The influence of sawmill wood wastes on the distribution and population of macroinvertebrates at Benin River, Niger Delta area, Nigeria

The impact of sawmill wood wastes on the distribution of benthic macroinvertebrates at the Sapele section of Benin River, Niger Delta, Nigeria, was investigated from March 2005 to August 2005. A total of 434 individuals were collected by kick-sampling method, representing 21 taxa of benthic macroinvertebrates. Three stations, 1, 2, and 3, were selected from upstream of the site, receiving wood wastes discharge, the impacted site and its down stream, respectively. Among the water quality variables, conductivity, dissolved oxygen, biochemical oxigen demand (BOD(5)), nitrate-nitrogen, phosphate-phosphorus, transparency, and alkalinity were significantly different (P<0.05) among the stations. Orthogonal comparison by Duncan's multiple range test showed that station 2 (the impacted site) was the cause of the difference. More sensitive species such as Ephemeroptera or Plecoptera were completely absent from station 2, the impacted site. Species abundance was similar in station 1 and 3, indicating that the wood wastes must have adversely affected the distribution of these macroinvertebrates, especially the intolerant species. The wood waste discharge not only altered the water chemistry, but also stimulated the abundance of less-sensitive macroinvertebrate species.     

Wetlands serve as natural sources for improvement of stream ecosystem health in regions affected by acid deposition

For over 40 years, acid deposition has been recognized as a serious international environmental problem, but efforts to restore acidified streams and biota have had limited success. The need to better understand the effects of different sources of acidity on streams has become more pressing with the recent increases in surface water organic acids, or ‘brownification,’ associated with climate change and decreased inorganic acid deposition. Here, we carried out a large scale multi‐seasonal investigation in the Adirondacks, one of the most acid‐impacted regions in the United States, to assess how acid stream producers respond to local and watershed influences and whether these influences can be used in acidification remediation. We explored the pathways of wetland control on aluminum chemistry and diatom taxonomic and functional composition. We demonstrate that streams with larger watershed wetlands have higher organic content, lower concentrations of acidic anions, and lower ratios of inorganic to organic monomeric aluminum, all beneficial for diatom biodiversity and guilds producing high biomass. Although brownification has been viewed as a form of pollution, our results indicate that it may be a stimulating force for biofilm producers with potentially positive consequences for higher trophic levels. Our research also reveals that the mechanism of watershed control of local stream diatom biodiversity through wetland export of organic matter is universal in running waters, operating not only in hard streams, as previously reported, but also in acid streams. Our findings that the negative impacts of acid deposition on Adirondack stream chemistry and biota can be mitigated by wetlands have important implications for biodiversity conservation and stream ecosystem management. Future acidification research should focus on the potential for wetlands to improve stream ecosystem health in acid‐impacted regions and their direct use in stream restoration, for example, through stream rechanneling or wetland construction in appropriate hydrologic settings.     

Deforestation and sewage effects on aquatic macroinvertebrates in urban streams in Manaus,Amazonas, Brazil

In the last few years, awareness in developed countries has increased regarding the importance of urban watercourses as essential natural resources for human well being. Macroinvertebrates have been used as bioindicators to complement physico-chemical evaluation of water quality after environmental perturbations. The city of Manaus is closely associated with the Amazonian rain forest and with its dense hydrographic network. Any perturbation, such as deforestation and/or water pollution in the city’s streams, therefore causes changes in the local ecosystem as the population increases. In this study, 65 streams were sampled in October and November 2003. Samples were taken from stream-bed sediment in the center of the channel and litter/sediment at the edge of the stream. Deforestation, total Nitrogen (TN), total Phosphorus (TP), depth, width, electrical conductivity, temperature and dissolved Oxygen (DO) were measured. A total of 115,549 specimens were collected, distributed among 152 taxa. Oligochaeta, Chironomus, Psychodidae and Ceratopogonidae were the taxa with the greatest frequencies of occurrence and the highest total abundances. Higher deforestation, TN and TP were correlated with lower DO and greater electrical conductivity, pH and water temperature. Deforestation, TN and TP were not associated with water velocity and stream width. Depth was the only variable correlated (negatively) with deforestation and not correlated with TN and TP. Greater deforestation, TN and TP were correlated with lower richness of taxa; but these variables did not affect abundance. Canonical Correspondence Analysis ordenated the streams into two groups; the majority of the streams were in the group with high levels of deforestation and with high values of TP, TN, pH, electrical conductivity and temperature, where the macroinvertebrates were reduced to a few taxa. The other group was composed of streams that were well oxygenated and deep, where richness of taxa was higher. These results indicate changes in community composition in response to changes in environmental conditions. The highest taxa correlation was with streams that were well oxygenated and had the greatest depth and water velocity. Species Indicator Analysis identified 29 taxa as indicators of nonimpacted streams, 16 as indicators of deforested streams and three as indicators of streams impacted by deforestation and domestic sewage. Of the total sampled streams, 80% were impacted by deforestation and water pollution and had fauna tolerant of these perturbations. Water pollution, represented by TN and TP, affected the macroinvertebrate fauna in a way similar to deforestation, i.e., causing reduction in taxa richness, simplifying the insect community composition without changing abundance. Use of the taxa suggested in this study as environmental indicators could improve the evaluation of water quality in the streams in Central Amazonia. Electronic supplementary material Electronic supplementary material is available for this article at and accessible for authorised users. Handling editor: D. Dudgeon     

The relationship between surface water chemistry and geology in the North Branch of the Moose River

The chemistry of lakes and streams within the North Branch of the Moose River is strongly correlated with the nature and distrubution of geologic materials in the watershed. The dominance of thin glacial till and granitic gneiss bedrock in the region north and east of Big Moose Lake results in a geologically sensitive terrain that is characterized by surface water with low alkalinity and chemical compositions only slightly modified from ambient precipitation. In contrast, extensive deposits of thick glacial till and stratified drift in the lower part of the system (e.g. Moss-Cascade valley) allow for much infiltration of precipitation to the groundwater system where weathering reactions increase alkalinity and significantly alter water chemistry.The hypothesis that surficial geology controls the chemistry of surface waters in the Adirondacks holds true for 70 percent of the Moose River watershed. Exceptions include the Windfall Pond subcatchment which is predominantly covered by thin till, yet has a high surface water alkalinity due to the presence of carbonate-bearing bedrock. The rapid reaction rates of carbonate minerals allow for complete acid neutralization to occur despite the short residence time of water moving through the system. Another important source of alkalinity in at least one of the subcatchments is sulfate reduction. This process appears to be most important in systems containing extensive peat deposits.An analysis of only those subcatchments controlled by the thickness of surficial sediments indicates that under current atmospheric loadings watersheds containing less than 3 percent thick surficial sediments will be acidic while those with up to 12 percent will be extremely sensitive to acidification and only those with over 50 percent will have a low sensitivity.     

Sulfate Reduction Based Bioprocesses for the Treatment of Acid Mine Drainage and the Recovery of Metals

Biological sulfate reduction is increasingly replacing chemical unit processes in mining biotechnology. Sulfate reducing bacteria (SRB) can be used for treating ground‐ and surface waters contaminated with acid mine drainage (AMD), and for recovering metals from wastewater and process streams. Biologically produced H₂S precipitates metals as metal sulfides, while biogenic bicarbonate alkalinity neutralizes acidic waters. This paper reviews various passive and active SRB‐based alternatives as well as some process design aspects, such as reactor types, process configurations, and choices of substrates for sulfate reduction. The latest developments of using various low‐cost substrates together with new bioprocess designs are increasing the uses and applications of SRB‐based bioreactors in AMD control and selective metal recovery.     

Effects of land cover on chemical characteristics of streams in the Cerrado region of Brazil

The Cerrado is the second largest Brazilian biome and contains the headwaters of three major hydrological basins in Brazil. In spite of the biological and ecological relevance of this biome, there is little information about how land use changes affect the chemistry of low-order streams in the Cerrado. To evaluate these effects streams that drain areas under natural, rural, and urban land cover were sampled near Brasília, Brazil. Water samples were collected between September 2004 and December 2006. Chemical concentrations generally followed the pattern of Urban > Rural > Natural. Median conductivity of stream water of 21.6 (interquartile: 22.7) ??S/cm in urban streams was three and five-fold greater relative to rural and natural areas, respectively. In the wet season, despite of increasing discharge, concentration of many solutes were higher, particularly in rural and natural streams. Streams also presented higher total dissolved N (TDN) loads from natural to rural and urban although DIN:DON ratios did not differ significantly. In natural and urban streams TDN was 80 and 77% dissolved organic N, respectively. These results indicate that alterations in land cover from natural to rural and urban are changing stream water chemistry in the Cerrado with increasing solute concentrations, in addition to increased TDN output in areas under urban cover, with potential effects on ecosystem function.     

Species richness of aquatic macrophyte communites in Central Canada

Aquatic macrophyte species richness (SR) was examined at 430 sites in the central Canadian region in relation to water body type, bottom substrate and 8 water chemistry parameters. SR was highest in rivers and lakes, intermediate in creeks, and lowest in ponds. The highest values occurred where granitic bedrock, highly organic substrates or sand predominated. SR was significantly inversely correlated in the study area as a whole with 7 of the water chemistry parameters; of these, total alkalinity was the most important. However, the relative importance of the respective parameters differed for various water body types. The relationship between SR and phosphorus was positive in ponds, but negative for all other water body types. Stepwise sultiple regression analysis identified phosphorus, total alkalinity and dissolved organic matter as important factors in ponds; sulphate, total alkalinity and chloride in lakes, and sulphate and phosphorus in lotic habitats. Log transformations improved the correlations for some variables. However, the water chemistry parameters examined accounted for less than half of the total variability in SR. Apparently SR depends on many different factors, including surface areaand bottom type, whose relative contributions vary with situation.     

Biogeochemical response of organic-rich freshwater marshes in the Louisiana delta plain to chronic river water influx

To help evaluate effects of Mississippi River inputs to sustainability of coastal Louisiana ecosystems, we compared porewater and substrate quality of organic-rich Panicum hemitomon freshwater marshes inundated by river water annually for more than 30 years (Penchant basin, PB) or not during the same time (Barataria basin, BB). In the marshes receiving river water the soil environment was more reduced, the organic substrate was more decomposed and accumulated more sulfur. The porewater dissolved ammonium and orthophosphate concentrations were an order of magnitude higher and sulfide and alkalinity concentrations were more than twice as high in PB compared with BB marshes. The pH was higher and dissolved iron concentrations were more than an order of magnitude lower in PB marshes than in BB marshes. The influx of nutrient-rich river water did not enhance end-of-year above-ground standing biomass or vertical accretion rates of the shallow substrate. The differences in porewater chemistry and substrate quality are reasonably linked to the long-term influx of river water through biogeochemical processes and transformations involving alkalinity, nitrate and sulfate. The key factor is the continual replenishment of alkalinity, nitrate and sulfate via overland flow during high river stage each year for several weeks to more than 6 months. This leads to a reducing soil environment, pooling of the phytotoxin sulfide and inorganic nutrients in porewater, and internally generated alkalinity. Organic matter decomposition is enhanced under these conditions and root mats degraded. The more decomposed root mat makes these marshes more susceptible to erosion during infrequent high-energy events (for example hurricanes) and regular low-energy events, such as tides and the passage of weather fronts. Our findings were unexpected and, if generally applicable, suggest that river diversions may not be the beneficial mitigating agent of wetland restoration and conservation that they are anticipated to be.