基于环境DNA宏条形码技术的秦淮河生物多样性研究

秦淮河是南京的母亲河,其生物多样性受城市化进程影响面临严重威胁,而物种资源调研是生物多样性保护的基础。环境DNA宏条形码技术较形态学监测是一种简单高效、灵敏度高的新型监测技术。为探究秦淮河浮游生物、底栖动物及鱼类的生物多样性,于2019年7月,采用环境DNA宏条形码技术对其进行了探究,并分析了秦淮河上下游间的差异及环境因子对其群落结构的影响。结果表明:秦淮河共监测到浮游动物13属22种407个操作分类单元(Operational Taxonomic Units, OTUs),浮游植物85属60种4445个OTUs,底栖动物16属17种212个OTUs,鱼类53属44种1663个OTUs。其中浮游动物以游泳轮虫目(Ploima)和双甲目(Diplostraca)为主,共占浮游动物63.37%,浮游植物以隐藻门(Cryptomonas)和褐藻门(Ochrophyta)为主,共占浮游植物88.11%,底栖动物中节肢动物门(Arthropoda)占比最高,达91.67%,鱼类中鲤形目(Cypriniformes)占比最高,达69.99%。与秦淮河历史形态学监测数据相比,环境DNA宏条形码技术在...     

Relationships between stream macroinvertebrates and environmental variables at multiple spatial scales

1. Aquatic communities are structured by multiple forces, and identifying the driving factors over multispatial scales is an important research issue. The East Asian monsoon region is globally one of the richest environments in terms of biodiversity, and is undergoing rapid human development, yet the river ecosystems in this region have not been well studied. We applied a hierarchical framework to incorporate regional and local environmental effects on stream macroinvertebrate communities in this region. The knowledge gained is expected to improve the understanding of the importance of spatial scale on regional and local diversity in the East Asian monsoon region. 2. A national data set of benthic macroinvertebrates and environmental variables (geographical, land‐use, hydrological, substratum and physicochemical elements) in Korean rivers was used to determine the habitat preferences of macroinvertebrates. 3. Latitude, proportion of forest coverage, riffle habitat, silt substratum and temperature were the most important determinants for the ordinations of macroinvertebrate communities in each category evaluated by canonical correspondence analysis (CCA). The optimal habitats for stream macroinvertebrates are not the same for all species, and overall community metrics and abundance of sensitive species tended to be lower in open agricultural and urban streams than in forested streams. The sensitivity of mayflies and stoneflies to anthropogenic disturbances implicated them as good indicators to assess the effects of urban and agricultural activities. 4. A partial CCA was used to evaluate the relative importance of macrohabitat and microhabitat variables on community composition at three spatial scales (whole country, the large Han River basin and two small sub‐basins in the lowlands and highlands). The majority of community variation (17–22% for each environmental element) was explained by macrohabitat variables at the regional spatial scale. In contrast, large proportions (15–18%) were explained by microhabitat variables at the local spatial scale. 5. Our findings indicate that the relative importance of habitat scales should be determined by geographical size and that comprehensive understanding of multispatial scale patterns can be important for implementing sound biodiversity conservation programmes.     

Assessing and conserving groundwater biodiversity: synthesis and perspectives

1. This paper is a synthesis of a special issue on groundwater biodiversity with a focus on obligate subterranean species, the stygobionts. The series of papers constitutes a great leap forward in assessing and understanding biodiversity patterns because of the use of large quantitative data sets obtained over a broad geographic scale. They also represent a conceptual shift, away from a purely taxonomic and phylogenetic focus to the analysis of whole groundwater assemblages.
2. The general patterns emerging for groundwater fauna are: very high levels of endemism, low local diversity relative to regional diversity, a limited number of lineages, occurrence of many relicts, and truncated food webs with very few predators.
3. β-Diversity is at least as important as α-diversity in determining total richness at different scales (aquifer, basin and region) and overall taxa richness increases across spatial scales.
4. Advances in understanding groundwater biodiversity patterns further include identification of several important factors related to geology and hydrology that determine the composition of European stygobiotic assemblages.
5. Important challenges for future research include improving sampling strategies, filling gaps in sampling coverage, intensifying research on theoretical and statistical models, and including functional and genetic diversity components in biodiversity assessments.
6. Strategies are proposed for protecting groundwater biodiversity and an argument is made to integrate biodiversity in groundwater management. Applying principles such as complementarity and flexibility for groundwater biodiversity conservation is a major step toward delineating a reserve network that maximise species representation at the European scale.     

呼兰河湿地夏、秋两季浮游植物功能分组演替及其驱动因子

于2012年夏、秋两季把呼兰河湿地划分为湿地保护区、湿地农业区、湿地工业区三部分,根据不同生境设置采样点并进行浮游植物标本采集。研究期间共鉴定浮游植物191个分类单位,隶属于7门9纲19目28科69属。浮游植物种类组成主要以硅藻门种类数最多(43%),绿藻门其次(28%),另外裸藻门(17.2%)和蓝藻门(8.3%)也占较大的比例。浮游植物丰度从夏季的1.23×10~7个/L上升为秋季的1.98×10~7个/L,两季平均1.6×10~7个/L。夏、秋两季共划分浮游植物功能分组19个,X1/W2/MP/Lo/J组藻种在夏、秋两季中均有稳定的出现,并占较大丰度比例,H1/Y/W1组的藻种只在特定的季节或地点出现,D/P/TB组藻种虽出现的频率较高但相对丰度较低。代表性功能分组从夏季的H1/MP/Lo/TB/J/G演替为秋季的MP/W2/X1/J/W1/Y。在采集浮游标本的同时,对电导率(SpCond)、总磷(TP)、水温(WT)等环境因子进行监测。利用典范对应分析探讨环境因子与浮游植物功能分组间的相互关系。研究结果显示,电导率,总磷和水温是驱动呼兰河湿地浮游植物功能组演替的主要环境因素。     

Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale

Much biodiversity data is collected worldwide, but it remains challenging to assemble the scattered knowledge for assessing biodiversity status and trends. The concept of Essential Biodiversity Variables (EBVs) was introduced to structure biodiversity monitoring globally, and to harmonize and standardize biodiversity data from disparate sources to capture a minimum set of critical variables required to study, report and manage biodiversity change. Here, we assess the challenges of a ‘Big Data’ approach to building global EBV data products across taxa and spatiotemporal scales, focusing on species distribution and abundance. The majority of currently available data on species distributions derives from incidentally reported observations or from surveys where presence‐only or presence–absence data are sampled repeatedly with standardized protocols. Most abundance data come from opportunistic population counts or from population time series using standardized protocols (e.g. repeated surveys of the same population from single or multiple sites). Enormous complexity exists in integrating these heterogeneous, multi‐source data sets across space, time, taxa and different sampling methods. Integration of such data into global EBV data products requires correcting biases introduced by imperfect detection and varying sampling effort, dealing with different spatial resolution and extents, harmonizing measurement units from different data sources or sampling methods, applying statistical tools and models for spatial inter‐ or extrapolation, and quantifying sources of uncertainty and errors in data and models. To support the development of EBVs by the Group on Earth Observations Biodiversity Observation Network (GEO BON), we identify 11 key workflow steps that will operationalize the process of building EBV data products within and across research infrastructures worldwide. These workflow steps take multiple sequential activities into account, including identification and aggregation of various raw data sources, data quality control, taxonomic name matching and statistical modelling of integrated data. We illustrate these steps with concrete examples from existing citizen science and professional monitoring projects, including eBird, the Tropical Ecology Assessment and Monitoring network, the Living Planet Index and the Baltic Sea zooplankton monitoring. The identified workflow steps are applicable to both terrestrial and aquatic systems and a broad range of spatial, temporal and taxonomic scales. They depend on clear, findable and accessible metadata, and we provide an overview of current data and metadata standards. Several challenges remain to be solved for building global EBV data products: (i) developing tools and models for combining heterogeneous, multi‐source data sets and filling data gaps in geographic, temporal and taxonomic coverage, (ii) integrating emerging methods and technologies for data collection such as citizen science, sensor networks, DNA‐based techniques and satellite remote sensing, (iii) solving major technical issues related to data product structure, data storage, execution of workflows and the production process/cycle as well as approaching technical interoperability among research infrastructures, (iv) allowing semantic interoperability by developing and adopting standards and tools for capturing consistent data and metadata, and (v) ensuring legal interoperability by endorsing open data or data that are free from restrictions on use, modification and sharing. Addressing these challenges is critical for biodiversity research and for assessing progress towards conservation policy targets and sustainable development goals.     

渭河底栖动物性状和功能对空间尺度环境变量响应的生态区差异性

以我国中部渭河南部流域山区和平原生态区的底栖动物为研究对象,通过计算29个生物性状类别和7个功能多样性指数,比较了不同生态区的生物性状组成和功能与性状多样性指数差异性;应用综合RLQ和fourth-corner方法探索底栖动物生物性状组成与土地利用和理化变量的关系;通过广义线性模型(GLM)比较不同空间尺度环境变量对底栖动物功能与性状多样性指数影响的生态区差异性。研究发现,共18个底栖动物性状组成在山区和平原间存在显著差异性,其中具有无庇护所和以叶片为庇护所材料、外骨骼轻微骨化和骨化良好、草食性、捕食性等生物性状的底栖动物栖息于栖境状况较好的山区,体壁呼吸、虫体柔软、集食者等生物性状更多的集中在人类活动较严重的平原区。除了功能均匀度指数外,山区的性状和功能多样性指数均显著高于平原,说明平原环境干扰显著降低了底栖动物性状和功能多样性。综合RLQ和fourth-corner方法表明底栖动物生物性状对环境胁迫的响应存在可预测性。GLM模型结果表明,山区和平原生物性状和功能多样性指数受到不同空间尺度土地利用和理化环境变量的影响:流域尺度城镇用地、水温和TN含量是影响山区功能和性状多样性指数模型的重要环境变量,但平原区河段尺度农业用地面积百分比和平均水深是影响功能和性状多样性的主要因子。     

东太湖鱼类群落结构特征及其与环境因子的关系

基于2019年4月、7月和10月的调查数据,用多元分析方法研究了围网拆除后东太湖鱼类群落结构的变化,及其与主要环境因子的关系。共调查到鱼类4目10科31属39种,其中鲤形目鱼类占69.23%。按不同生态类型东太湖鱼类主要为定居性鱼类、中上层鱼类以及肉食性和杂食性鱼类。优势种为鲫（Carassius auratus）、大鳍鱊（Acheilognathus macropterus）和（Hemiculter leucisculus）等。鱼类的种类数、渔获量、丰富度指数和多样性指数在监测月份间均差异显著（P＜0.05）,均为4月 > 7月 > 10月。鱼类个体呈现小型化,鱼类物种多样性处在一般水平。等级聚类分析（Cluster）结果表明,除10月份的1号点和3号点外,各样方间的相似度在46.75%以上。单因子相似性分析（ANOSIM）和相似性百分比分析（SIMPER）也表明,4月和10月的鱼类群落物种组成差异显著,平均相异性为59.41%。丰度/生物量曲线（ABC）分析表明,东太湖鱼类群落结构处于中度干扰状态。冗余分析（RDA）表明,总磷对主要鱼类变化的解释量为21.0%,是重要的解释因子（蒙特卡罗检验P＝0.036）。而总磷、pH、溶解氧等是目前影响东太湖鱼类群落的主要环境因子。     

Macroecological scale effects of biodiversity on ecosystem functions under environmental change

Conserving different spatial and temporal dimensions of biological diversity is considered necessary for maintaining ecosystem functions under predicted global change scenarios. Recent work has shifted the focus from spatially local (α‐diversity) to macroecological scales (β‐ and γ‐diversity), emphasizing links between macroecological biodiversity and ecosystem functions (MB–EF relationships). However, before the outcomes of MB–EF analyses can be useful to real‐world decisions, empirical modeling needs to be developed for natural ecosystems, incorporating a broader range of data inputs, environmental change scenarios, underlying mechanisms, and predictions. We outline the key conceptual and technical challenges currently faced in developing such models and in testing and calibrating the relationships assumed in these models using data from real ecosystems. These challenges are explored in relation to two potential MB–EF mechanisms: “macroecological complementarity” and “spatiotemporal compensation.” Several regions have been sufficiently well studied over space and time to robustly test these mechanisms by combining cutting‐edge spatiotemporal methods with remotely sensed data, including plant community data sets in Australia, Europe, and North America. Assessing empirical MB–EF relationships at broad spatiotemporal scales will be crucial in ensuring these macroecological processes can be adequately considered in the management of biodiversity and ecosystem functions under global change.     

荣成俚岛人工鱼礁区游泳动物群落特征及其与主要环境因子的关系

根据2009年5月份至2010年2月份于山东荣成俚岛人工鱼礁区和对照区4个季度月的游泳动物及同步的环境调查数据,采用Margalef种类丰富度指数,Shannon-Wiener多样性指数,Pielou均匀度指数分析了鱼礁区游泳动物群落组成和物种多样性的时空分布特征,运用梯度分析法对调查区域游泳动物群落格局与环境因子进行排序分析,结合蒙特卡罗检验确定影响鱼礁区游泳动物群落结构的控制因子。调查期间共捕获游泳动物18种,隶属于8目15科,优势种为许氏平鲉(Sebastes schlegeli)、大泷六线鱼(Hexagrammos otakii)和斑头六线鱼(Hexagrammos agrammus),其中许氏平鲉在渔获量组成中占绝对优势(41%)。鱼礁区游泳动物的渔获种类数和渔获量高于各自对照区,但差异不显著(P>0.05), 季度月平均CPUE最高值出现在近岸礁区,达到830.24 g ·网^-1·d^-1。群落组成特征值上,春秋季的参数值最大,鱼礁区与对照区间并无显著差异(P>0.05)。聚类分析表明,春季、夏季和冬季均是季度月内不同区域的样方相似性较高,而秋季的远岸礁区及其对照区样方与春季各区域样方的相似性高于秋季近岸礁区及其对照区。RDA分析表明,水温对游泳动物群落组成变化的解释量为37.1%,是主要的解释因子(P=0.002)。水温和水深等环境因子主导了俚岛人工鱼礁区游泳动物群落结构的时空变化。     

Metacommunity‐scale biodiversity regulation and the self‐organised emergence of macroecological patterns

There exist a number of key macroecological patterns whose ubiquity suggests that the spatio‐temporal structure of ecological communities is governed by some universal mechanisms. The nature of these mechanisms, however, remains poorly understood. Here, we probe spatio‐temporal patterns in species richness and community composition using a simple metacommunity assembly model. Despite making no a priori assumptions regarding biotic spatial structure or the distribution of biomass across species, model metacommunities self‐organise to reproduce well‐documented patterns including characteristic species abundance distributions, range size distributions and species area relations. Also in agreement with observations, species richness in our model attains an equilibrium despite continuous species turnover. Crucially, it is in the neighbourhood of the equilibrium that we observe the emergence of these key macroecological patterns. Biodiversity equilibria in models occur due to the onset of ecological structural instability, a population‐dynamical mechanism. This strongly suggests a causal link between local community processes and macroecological phenomena.     

The taste system in fishes and the effects of environmental variables

The adaptability of the taste system in fish has led to a large variety in taste bud morphology, abundance and distribution, as well as in taste physiology characteristics in closely related species with different modes of life and feeding ecology. However, the modifications evoked in the sense of taste, or gustation, particularly during ontogeny when fishes are subject to different environmental variables, remain poorly studied. This review paper focusses on current knowledge to show how plastic and resistant the taste system in fishes is to various external factors, linked to other sensory inputs and shifts in physiological state of individuals. Ambient water temperature is fundamental to many aspects of fish biology and taste preferences are stable to many substances, however, the taste-cell turnover rate strongly depends on water temperature. Taste preferences are stable within water salinity, which gives rise to the possibility that the taste system in anadromous and catadromous fishes will only change minimally after their migration to a new environment. Food-taste selectivity is linked to fish diet and to individual feeding experience as well as the motivation to feed evoked by attractive (water extracts of food) and repellent (alarm pheromone) odours. In contrast, starvation leads to loss of aversion to many deterrent substances, which explains the consumption by starving fishes of new objects, previously refused or just occasionally consumed. Food hardness can significantly modify the final feeding decision to swallow or to reject a grasped and highly palatable food item. Heavy metals, detergents, aromatic hydrocarbons and other water contaminants have the strongest and quickest negative effects on structure and function of taste system in fish and depress taste perception and ability of fishes to respond adequately to taste stimuli after short exposures. Owing to phenotypic plasticity, the taste system can proliferate and partially restore the ability of fishes to respond to food odour after a complete loss of olfaction. In general, the taste system, especially its functionality, is regarded as stable over the life of a fish despite any alteration in their environment and such resistance is vital for maintaining physiological homeostasis.     

生物多样性与生态系统服务——关系、权衡与管理

生物多样性和生态系统服务是人类生存和社会经济可持续发展的物质基础,应对生物多样性丧失和生态系统服务退化问题已经成为继气候变化之后的又一个全球性环境热点问题。生物多样性是生态系统生产力、稳定性、抵抗生物入侵以及养分动态的主要决定因素,生物多样性越高,生态系统功能性状的范围越广,生态系统服务质量就越高越稳定。目的是探讨生物多样性和生态系统服务之间的关系:(1)明确了生物多样性与生态系统过程、功能、服务之间的关系;(2)生物多样性在生态系统服务中的角色:生物多样性在不同的空间尺度通过各种形式的运行机制与生态系统服务产生联系,生物多样性是生态系统过程的调节者,是巩固生态系统服务的一个重要因素,生物多样性也是一种终极的生态系统服务,并在遗传和物种水平上直接贡献了其利益和价值;(3)生物多样性与生态系统服务权衡和协同关系的研究可以更好的帮助管理人员做出有利的决策和保护工作,也是制定规划和适应策略以减少生物多样性危机带来的不利影响的基础;(4)生物多样性与生态系统服务的关系在不同的时间和空间尺度上是不恒定的,有必要共同确定生态系统服务和生物多样性的空间格局,以有效和可持续的进行生态系统管理;(5)虽然生物多样性保护和生态系统管理还存在许多不确定性,但相关理论应该在管理、保护和恢复生态系统中发挥重要作用。研究提出了进一步研究的领域,以促进生物多样性保护和生态系统服务提供之间的协同作用。希望对相关领域的研究有所帮助。     

不同类群水生昆虫群落间的一致性以及空间和环境因子的相对作用

生物多样性监测和保护过程中通常用到指示类群,然而对于这些指示类群有效性的测度仍然十分欠缺.为探讨不同类群水生昆虫群落的一致性及空间因子、环境变量的相对影响,作者于2010年4月对东苕溪流域源头溪流21个采样点进行了调查.共记录水生昆虫7目44科92属130种.我们将水生昆虫群落划分成鞘翅目(C)、蜉蝣目+襀翅目+毛翅目(EPT)和双翅目+广翅目+蜻蜒目(DMO)3个类群.一致性分析结果表明:3个类群的群落一致性(r)较高,分别为C对EPTr=0.65 (P＜0.001)、C对DMO r=0.67 (P＜0.001)、EPT对DMO r=0.82 (P＜0.001).方差分解表明环境变量是影响不同类群水生昆虫群落结构的主要因素,空间因子的影响相对较小.环境因子中影响不同类群水生昆虫群落的关键变量大体相似,其中海拔、pH、平均流速和化学需氧量是最主要的驱动因子.我们的结果表明该研究区域不同类群的水生昆虫群落一致性很高,且对环境变量的响应也相似;因此,在水生昆虫生物多样性保护中可考虑利用其中的某一类群,如蜉蝣目+襀翅目+毛翅目(EPT)类群,作为有效的指示类群.     

Assessing latitudinal gradients in speciation rates and biodiversity at the global scale

The mechanisms responsible for latitudinal biodiversity gradients have fascinated and perplexed biologists since the time of Darwin. Ecological theory has yielded two general classes of mechanisms to account for variation in biodiversity: dispersal–assembly mechanisms that invoke differences in stochastic rates of speciation, extinction and dispersal; and niche–assembly mechanisms that invoke species differences, species interactions and environmental heterogeneity. Distinguishing between these two classes of mechanisms requires explicit consideration of macroevolutionary dynamics. Here, we assess the importance of dispersal–assembly mechanisms in the origin and maintenance of biodiversity using fossil data that encompass 30 million years of macroevolution for three distinct groups of ocean plankton: foraminifera, nannoplankton and radiolaria. Applying new methods of analysis to these fossil data, we show here for the first time that latitudinal biodiversity gradients exhibit strong positive correlations with speciation rates even after explicitly controlling for variation in sampling effort and for increases in habitat area towards the equator. These findings provide compelling evidence that geographical variation in macroevolutionary dynamics is a primary determinant of contemporary biodiversity gradients, as predicted by dispersal–assembly theory.     

浙江定海次生林内物种丰富度与生物量和生产力关系的环境依赖性

迄今生物多样性与生态系统功能关系的研究主要在物种组成随机配置的人工生态系统中进行, 在自然生态系统中研究较少, 且未考虑环境因子如何影响生态系统功能及其与生物多样性的关系。本研究选取亚热带广泛分布的次生林为研究对象, 利用模型拟合的方法, 探讨亚热带次生林中物种丰富度与生物量和生产力之间的关系, 以及环境因子(海拔、坡度、坡向、土层厚度)和次生林恢复时间(林龄)对生物量、生产力、物种丰富度与生物量和生产力间关系的影响。结果表明, 当不考虑环境因子时, 物种丰富度与生物量之间存在显著的线性正相关关系, 而与生产力之间存在显著的二次关系(先增加后减少的驼峰型)。当考虑环境因子时, 个体密度和土层厚度对生物量具有显著影响, 而环境因子对生产力并无显著效应。在坡度较陡、坡向朝南及土层较厚的环境条件下, 物种丰富度与生物量具有显著的线性正相关关系; 而在坡度较缓、坡向朝北及土层较薄的环境条件下, 物种丰富度不影响生物量。在较高海拔环境条件下, 生产力随物种丰富度先增加后减少(驼峰形状), 而在其他环境条件下, 生产力均不响应物种丰富度。以上结果说明自然森林生态系统中物种丰富度与生物量和生产力的关系存在差异, 且其相互间的关系依赖于环境因子。