Perpetuation of the hereditary sigma virus in populations of its host,Drosophila melanogaster. Geographical analysis of correlated polymorphisms

In natural populations of Drosophila melanogaster, about 10% of the individuals are infected by a virus, sigma, which is not contagious but is transmitted through gametes. These populations are also regularly polymorphic for two alleles, O and P, of a locus ref(2)P; the P allele interferes with the multiplication of the virus. Two viral Types are found in populations, differing in their sensitivity to the P allele. Many samples of flies have been collected in different parts of the world and for each of them, the P frequency has been measured and the viral Type determined. A clear geographical differentiation appears for both these traits; they present a mutual adaptation leading to relatively low frequencies of infected flies in natural populations. Most viruses are only known from highly selected laboratory strains. The observations reported in this paper give evidence of the self restraint exercised by the sigma virus at the population level; they indicate that the characteristics of wild viral clones are likely to differ from those of laboratory strains and also from one population to another.The sigma virus is comparable to other genetical elements, that can be more efficiently transmitted than a mendelian allele, such as transposable elements. The discussion illustrates some of the factors involved in the perpetuation of such elements in a population and points out the difficulty of taking them all into consideration in theoretical models dealing with their perpetuation.     

Evolution of the Drosophila melanogaster-sigma virus system in a natural population from Tübingen

Summary In natural populations of D. melanogaster, usually, a minority of individuals are infected by a Rhabdovirus called sigma. This virus is not contagious but is vertically transmitted through the gametes. In D. melanogaster, a polymorphism for two alleles (O, permissive and P, restrictive) of a gene responsible for resistance to the virus is regularly observed in the wild. On the virus side two types are found, which differ in their sensitivity to the P allele: Type I is very sensitive, and Type II more resistant. Previous findings had led to the hypothesis that an invasion of Type II clones, starting from central France, might be spreading over European populations. This replacement of viral Type I by viral Type II in natural populations could be observed in Languedoc (southern France), where it led to a dramatic increase in the frequency of infected flies. The invasion hypothesis is confirmed by the data from samples collected at Tübingen, where the frequency of Type II clones increased from 0.27 to 0.93 over a 6-year period (1985–1991). However, over the same period, no increase in the frequency of infected flies was observed. The evolution of other viral characteristics is discussed.     

Evolution of natural populations in the Drosophila melanogaster sigma virus system I. Languedoc (Southern France)

In natural populations of Drosophila melanogaster, sigma virus is usually present in a minority of individuals. The virus is transmitted transovarially but is not contagious from fly to fly. Two viral Types (I and II) are found in populations. One of them (Type II) is better adapted to an allele for resistance to the virus, present as a polymorphism in fly populations. Previous observations have led to the hypothesis that a viral Type II originating in central France might be invading populations. The study of Languedoc populations was undertaken to examine this hypothesis. Two striking phenomena were observed. The strong increase in Type II clones frequency (from 0.53 to 0.91) confirmed that there was invasion in this region. The frequency of infected flies also increased dramatically, at levels never observed elsewhere yet, which indicates that Languedoc should present some unusual characteristics. The epidemiological consequences of such a burst, in the case of a pathogenic virus would have to be taken into consideration. Significant changes in other viral characteristics, from 1983 to 1987, in Languedoc populations have also been documented.     

Polymorphism of the Drosophila melanogaster — sigma virus system

In natural populations of D. melanogaster, a minority of flies are usually infected by the sigma Rhabdovirus, which is not contagious but vertically transmitted. A few parameters have been identified that affect the evolution of the Drosophila — sigma system. Various sets of values of these parameters in males mutually adapted to one another have been established in different populations. This study analyses female characteristics that were previously reputed not to vary much between populations. The newly collected data show that these characteristics (mainly transovarial transmission here) may also be polymorphic in the wild, and may contribute to the diversity of equilibria established between the virus and its host. The observations presented here, obtained from various populations, confirm the complexity of this system of two coevolving organisms: as already noted there seem to be as many different sets of values of parameters as there are populations.     

Evolution of natural populations in the Drosophila melanogaster sigma system II. Northern and Central France

A survey of French natural populations of Drosophila melanogaster has been systematically performed, concerning their status of infection by the sigma virus and the characteristics of viral clones. These investigations, which were not as extensive as those performed in the Languedoc region (Fleuriet et al., 1990) nevertheless give a good representation of the evolution of this system because of the long period involved (almost 20 years). Some trends were observed in all French populations such as (1) a decrease in the high efficiency of transmission by males (which is an important parameter for the viral invading ability); (2) high frequency of a best adapted viral Type. These high frequencies might be due to a recent invasion which is expected to spread to other European populations. However, the frequency of infected flies remained low in northern and central France, unlike in Languedoc. The complexity of this, apparently simple, system of two well-known coevolving organisms should once again be stressed. It is impossible with the known parameters to arrive at a general interpretation of observations made in Languedoc and the rest of France. These data may also throw some light on the structure of French wild populations of D. melanogaster which appear to be subdivided into local populations between which gene flow might be low.     

Disease association mapping in Drosophila can be replicated in the wild

Association and linkage mapping have become important tools in understanding the genetics of complex traits, including diseases in humans. As the success of association mapping is reduced by small effect sizes and limited power, linkage studies in laboratory-based model systems are still heavily used. But whether the results of these studies can be replicated in natural populations has been questioned. Here, we show that a polymorphism in the gene ref(2)P, which had previously been linked to sigma virus resistance in Drosophila melanogaster under laboratory conditions, also provides resistance against the virus in female flies in a wild population in the field. This genetic association is thus upheld in spite of a known genotype-by-genotype interaction and environmental variation.     

Comparative evolution of P-M system and infection by the sigma virus in French and Spanish populations of Drosophila melanogaster.

In 1983, an extensive survey of populations of D. melanogaster was started in a southern French region (Languedoc) in two non-Mendelian systems: the P-M system of transposable elements and the hereditary Rhabdovirus sigma. Unexpectedly fast-evolving phenomena were observed and interesting correlations were noted, giving similar geographical pattern to the region in both systems. For these reasons, the analysis was continued and extended towards the north (Rh?ne Valley) and the south (Spain). In the P-M system, all the Languedoc populations evolved from 1983 to 1991 towards the Q type which is characteristic of the Rh?ne Valley populations. In contrast, M' strains are currently observed in the southernmost French populations and in all Spanish ones, so that there is a clear pattern in their geographical distribution. The frequency of flies infected by the sigma virus dramatically increased from 1983 to 1988 in Languedoc; this increase was clearly correlated with some viral characteristics. But, in northern France, similar characteristics did not trigger any increase in the frequency of infected flies. The data presented here show that the distinctive features of Languedoc extend northwards through the Rh?ne Valley up to Lyon and disappears southwards before the Spanish border.     

Interaction between a picornavirus and a wild population ofDrosophila melanogaster

Summary Drosophila C virus (DCV) has a considerable impact on ovarian morphogenesis inDrosophila melanogaster host populations. This virus also affects the developmental time and the fresh weight of infected females. In order to investigate the hypothesis that DCV may play a role in the dynamics ofDrosophila populations, the fertility and embryonic and larvo-pupal death rates of a host population and that of five DCV-free populations were determined. A comparison of two populations, one of them DCV-free, the other infected, suggested that the fertility of the DCV-infected flies was higher than that of uninfected flies, despite a greater larvo-pupal death rate. Fertility of the infected flies was greater among the infected population than for the DCV-free populations. The DCV-free populations originated from five different localities. The virus clearly does have an impact on the biotic potential of its host population. This paper reports for the first time a positive interaction between a viral population and a host population as it increases certain parameters of host population dynamics.     

Clinal and seasonal variations in initial retention capacity of virginDrosophila melanogaster females as a strategy for fitness

Summary The study of the first laboratory generation of isofemale lines ofDrosophila melanogaster, founded by wild flies collected in populations of various geographical origins, has shown that virgin females differ in their capacity to control egg deposition. This capacity to delay the ovulation process when no sexual partner is available is genetically determined. The present study shows that the frequency distribution of the various phenotypes varies progressively along a latitudinal cline from Afrotropical to European regions, or from neotropical to nearctic areas, while a few oriental populations appear off the cline. This variation in initial retention capacity, added to a similar variation in number of ovarioles conditioning a potential increase in fecundity for mated flies, induces variation in reactivity to insemination which may be an adaptation to a variable environment. Moreover, similar study of F1 virgin females from isofemale lines founded by wild flies collected in Spring, Summer and Autumn in two French populations over ten successive years revealed that seasonal genetic variations occur in this capacity to postpone egg-laying in case of non-insemination. The frequency of the different phenotypes follows cyclical seasonal variations. Long retention phenotypes are more frequent in Spring and Autumn samples, whereas short retention phenotypes, closer to the ancestral African type, are more common in Summer generations. This balancing selection temporarily modifies the genetic equilibrium of the population, enhancing its competitive ability. Temperature appears to be the primordial selective factor both in geographical and in seasonal variations.     

Polymorphism of the Hereditary Sigma Virus in Natural Populations of DROSOPHILA MELANOGASTER

Previous studies have shown that, in natural French populations of Drosophila melanogaster, 10 to 20% of the flies are infected by the noncontagious, hereditary rhabdovirus sigma responsible for CO₂ sensitivity. These populations are also polymorphic for two alleles [ref(2)P^o and ref(2)P^p] of a gene for resistance to the sigma virus. Evidence is given here that two viral genetic types, differing in their response to the ref(2)P^p allele, are present in these populations of flies; the most common type is only slightly sensitive to the ref(2)P^p allele.     

Disease dynamics and persistence of Musca domestica salivary gland hypertrophy virus infections in laboratory house fly (Musca domestica) populations

Past surveys of feral house fly populations have shown that Musca domestica salivary gland hypertrophy virus (MdSGHV) has a worldwide distribution, with an average prevalence varying between 0.5% and 10%. How this adult-specific virus persists in nature is unknown. In the present study, experiments were conducted to examine short-term transmission efficiency and long-term persistence of symptomatic MdSGHV infections in confined house fly populations. Average rates of disease transmission from virus-infected to healthy flies in small populations of 50 or 100 flies ranged from 3% to 24% and did not vary between three tested geographical strains that originated from different continents. Introduction of an initial proportion of 40% infected flies into fly populations did not result in epizootics. Instead, long-term observations demonstrated that MdSGHV infection levels declined over time, resulting in a 10% infection rate after passing through 10 filial generations. In all experiments, induced disease rates were significantly higher in male flies than in female flies and might be explained by male-specific behaviors that increased contact with viremic flies and/or virus-contaminated surfaces.     

The recent spread of a vertically transmitted virus through populations of Drosophila melanogaster

The sigma virus is a vertically transmitted pathogen that commonly infects natural populations of Drosophila melanogaster. This virus is the only known host-specific pathogen of D. melanogaster, and so offers a unique opportunity to study the genetics of Drosophila-viral interactions in a natural system. To elucidate the population genetic processes that operate in sigma virus populations, we collected D. melanogaster from 10 populations across three continents. We found that the sigma virus had a prevalence of 0-15% in these populations. Compared to other RNA viruses, we found that levels of viral genetic diversity are very low across Europe and North America. Based on laboratory measurements of the viral substitution rate, we estimate that most European and North American viral isolates shared a common ancestor approximately 200 years ago. We suggest two explanations for this: the first is that D. melanogaster has recently acquired the sigma virus; the second is that a single viral type has recently swept through D. melanogaster populations. Furthermore, in contrast to Drosophila populations, we find that the sigma viral populations are highly structured. This is surprising for a vertically transmitted pathogen that has a similar migration rate to its host. We suggest that the low structure in the viral populations can be explained by the smaller effective population size of the virus.     

Factors Affecting the Distribution of Cytoplasmic Incompatibility in Drosophila Simulans

In Drosophila simulans a Wolbachia-like microorganism is responsible for reduced egg-hatch when infected males mate with uninfected females. Both incompatibility types have previously been found in North America, Europe and Africa. Some California populations have remained polymorphic for over two years, and the infection is apparently spreading in central California. Egg hatch proportions for wild-caught females from polymorphic populations show that the incompatibility system acts in nature, but egg mortality rates are apparently lower than observed in laboratory populations. Although infected females maintained under various laboratory conditions never produce uninfected offspring, some wild-caught infected females produce both infected and uninfected progeny. This helps explain the persistence of a low frequency of uninfected flies in predominantly infected populations and may also explain the other polymorphisms observed. Fitness comparisons of infected and uninfected stocks, including both larval and adult fitness components, indicate that fecundity may be the component most affected. Infected females suffer a fecundity reduction of 10-20% in the laboratory, but the reduction seems to be smaller in nature. A theoretical analysis provides some insight into the population biology of the infection.     

Rhabdoviruses in two species of Drosophila: vertical transmission and a recent sweep

Insects are host to a diverse range of vertically transmitted micro-organisms, but while their bacterial symbionts are well-studied, little is known about their vertically transmitted viruses. We have found that two sigma viruses (Rhabdoviridae) recently discovered in Drosophila affinis and Drosophila obscura are both vertically transmitted. As is the case for the sigma virus of Drosophila melanogaster, we find that both males and females can transmit these viruses to their offspring. Males transmit lower viral titers through sperm than females transmit through eggs, and a lower proportion of their offspring become infected. In natural populations of D. obscura in the United Kingdom, we found that 39% of flies were infected and that the viral population shows clear evidence of a recent expansion, with extremely low genetic diversity and a large excess of rare polymorphisms. Using sequence data we estimate that the virus has swept across the United Kingdom within the past ～11 years, during which time the viral population size doubled approximately every 9 months. Using simulations based on our lab estimates of transmission rates, we show that the biparental mode of transmission allows the virus to invade and rapidly spread through populations at rates consistent with those measured in the field. Therefore, as predicted by our simulations, the virus has undergone an extremely rapid and recent increase in population size. In light of this and earlier studies of a related virus in D. melanogaster, we conclude that vertically transmitted rhabdoviruses may be common in insects and that these host-parasite interactions can be highly dynamic.     

Fecundity as one of possible factors contributing to the dominance of the wMel genotype of Wolbachia in natural populations of Drosophila melanogaster

Alphaproteobacteria of the genus Wolbachia are common intracellular endosymbionts of a variety of insects. Their successful spread over a vast range of host taxa is often attributed to selective advantages conferred by the bacteria to infected individuals. Among the known diversity of Wolbachia pipientis infecting Drosophila melanogaster, a single genotype, wMel, within the wMel strain has been found to dominate over other genotypes world-wide. Genotyping of D. melanogaster wild populations from Ukraine reveals a relatively high frequency of the wMel genotype, although 31 % flies from an Uman’ population are infected with the rare genotype wMelCS. We demonstrate that wMelCS-infected females have lower fecundity compared to wMel-infected flies, which might be the cause of wMel prevalence in D. melanogaster populations. We report no difference in the bacterial transmission rate between these two bacterial genotypes. However, we observed an association between transmission fidelity of Wolbachia and genotype of D. melanogaster indicating that Wolbachia-host relationships in this case are more complex. Furthermore our study reveals fluctuations in Wolbachia infection rates in wMel-infected populations.     

On the maintenance of the polymorphism at the ref(2)P locus in populations of Drosophila melanogaster

Polymorphism for two alleles of the ref(2)P locus is a very constant feature of French natural populations of Drosophila melanogaster. One of these alleles interferes with the multiplication of the hereditary sigma virus in the fly. An equilibrium, quite similar to the natural one, has been observed previously in experimental populations, whether the sigma virus is present or not. Evidence is given that one of the selection components involved in the maintenance of this equilibrium affects adult stages when flies have not suffered severe larval competition. In conditions of severe larval competition, a maternal effect seems to be involved in the differential egg-to-adult viability of heterozygotes.     

Mass rearing history negatively affects mating success of male Anastrepha ludens (Diptera: Tephritidae) reared for sterile insect technique programs

Mating competitiveness and sterility induction into cohorts of wild Anastrepha ludens (Loew) (Diptera: Tephritidae) was compared among wild and laboratory flies reared for use in the sterile insect technique Mexican program. Laboratory flies stemming from an 11-yr-old bisexual strain were either not irradiated, irradiated at 3 krad (low dose), or irradiated at 8 krad. In 30 by 30 by 30-cm Plexiglas cages, where a cohort of laboratory flies (male and female) irradiated at different doses (0, 3, and 8 krad) was introduced with a cohort of wild flies, males and females of each type mated randomly among themselves. Compared with nonirradiated laboratory and wild males, irradiated males, irrespective of dose (3 or 8 krad), induced shorter refractory periods and greater mating frequency in wild females. Nevertheless, laboratory flies irradiated at a low dose induced greater sterility into cohorts of wild flies than laboratory flies irradiated at a high dose. In a 3 by 3 by 3-m walk-in cage, wild males gained significantly more matings with wild females than nonirradiated and irradiated laboratory males a finding that revealed a strong effect of strain on mating performance. Mating incompatibility of the laboratory strain might have obscured the effect of reduced irradiation doses on male mating performance in the walk-in cage. Our results highlight an urgent need to replace the A. ludens strain currently used by the Mexican fruit fly eradication campaign and at least suggest that reducing irradiation doses result in an increase in sterility induction in wild populations.     

A new virus disease in the housefly, Musca domestica (Diptera)

Reovirus particles were isolated from adults in laboratory colonies of the housefly, Musca domestica. These particles were spherical in outline, 57–76 nm in diameter, and were found only in hemocyte cytoplasm, where virions have been disclosed by a new technique. Virions were present in large numbers, and viral inclusion bodies were identified. The virus particles had pentagonal and hexagonal shapes resembling a simple icosahedral structure. The virus was shown to be infectious and pathogenic to adult flies through injection or by feeding them suspensions from flies that had died of the virus. Electron micrographs of midgut sections from infected flies showed that the midgut cells were packed with dark undulating threads which were not present in uninfected flies. However, no virus particles or inclusion bodies could be seen in these cells. On the basis of their association with infected flies, and the similarity to results from other studies on reoviruses and insect viruses, it is suggested that these threads are an alternative replicative form of the reovirus. When the virus suspensions from heavily infected flies were dialyzed against weak alkaline solutions, the threads showed an inner component of coiled material, 12 nm in diameter, inside an envelope with a diameter of 50–83 nm, mean 60.3 ± 7.5, composed of subunits 7–8 nm long and 7–8 nm across.     

Variation of body size within and between wild populations of Drosophila buzzatii

Four populations of the cactophilous species D. buzzatii have been compared with respect to the phenotypic variation of thorax and wing length of wild versus laboratory reared flies. Three of the strains were intercrossed to provide parent, F₁ and F₂ comparisons as a test of co-adaptation. The genetic contribution to phenotypic variation of laboratory reared flies was estimated from the correlation between sibs derived from random pair mating and reared individually in separate cultures. The average natural temperature during development was estimated from the relations between the wing/thorax ratio and temperature in laboratory tests.The variance of thorax and wing length of wild flies was several times greater than that of laboratory reared flies and the increase was attributed primarily to variation in larval food supply although temperature fluctuation is also important. There was no evidence of heterosis or F₂ break-down in the crosses. For two of the populations the heritability of thorax length was high, 60–70%, and substantially lower for the third. The average temperature estimated from the wing/thorax/temperature relationship differed between sites. The reduction of body size below the potential maximum averaged 30% for two and 20% for the other population, with a wide spread about these values. The evidence is discussed in relation to assessing the nature of ecological variation by comparing the variation of morphological traits in wild and laboratory reared flies.     

The Transcriptional Response of Drosophila melanogaster to Infection with the Sigma Virus (Rhabdoviridae)

Background

Bacterial and fungal infections induce a potent immune response in Drosophila melanogaster, but it is unclear whether viral infections induce an antiviral immune response. Using microarrays, we examined the changes in gene expression in Drosophila that occur in response to infection with the sigma virus, a negative-stranded RNA virus (Rhabdoviridae) that occurs in wild populations of D. melanogaster.

Principal Findings

We detected many changes in gene expression in infected flies, but found no evidence for the activation of the Toll, IMD or Jak-STAT pathways, which control immune responses against bacteria and fungi. We identified a number of functional categories of genes, including serine proteases, ribosomal proteins and chorion proteins that were overrepresented among the differentially expressed genes. We also found that the sigma virus alters the expression of many more genes in males than in females.

Conclusions

These data suggest that either Drosophila do not mount an immune response against the sigma virus, or that the immune response is not controlled by known immune pathways. If the latter is true, the genes that we identified as differentially expressed after infection are promising candidates for controlling the host''s response to the sigma virus.