Delignification and detoxification of peanut shell bio-waste using an extremely halophilic laccase from an Aquisalibacillus elongatus isolate

Extremophiles - Lignocellulose bioconversion is a harsh process requiring the use of surfactants and organic solvents. Consequently, the incorporation of laccases in this bioconversion requires the...     

Whole-cell biocatalysis in organic media

The use of water-immiscible organic solvents in whole-cell biocatalysis has been exploited for biotransformations involving sparingly water-soluble or toxic compounds. These systems can overcome the problem of low productivity levels in conventional media due to poor substrate solubility, integrate bioconversion and product recovery in a single reactor, and shift chemical equilibria enhancing yields and selectivities; nevertheless, the selection of a solvent combining adequate physicochemical properties with biocompatibility is a difficult task. The cell membrane seems to be the primary target of solvent action and the modification of its characteristics the more relevant cellular adaptation mechanism to organic solvent-caused stress. Correlations between the cellular toxicity or the extractive capacities of different solvents and some of their physical properties have been proposed in order to minimize preliminary, solvent-selection experimental work but also to help in the understanding of the molecular mechanisms of toxicity and extraction. The use of whole cells in organic-media biocatalysis provides a way to regenerate cofactors and carry out bioconversions or fermentations requiring multi-step metabolic pathways; some processes already are commercially exploited. Immobilization can further protect cells from solvent toxicity, and has thus been effectively used in organic solvent-based systems. Several examples of extractive fermentations and other whole-cell bioconversions in organic media are presented.     

Bioconversion of crude glycerol by fungi

The production of synthetic glycerol from petrochemical feedstocks has been decreasing in recent years. This is largely due to increasing supplies of crude glycerol derived as a co-product from the oleochemical industry, especially biodiesel production. The price of glycerol is at historic lows, and the supply of crude glycerol is projected to grow faster than its industrial uses. This oversupply is driving the transition from glycerol as a product to glycerol as a precursor for new industrial applications, including its use as a substrate for bioconversion. This article reviews the use of fungi for the bioconversion of crude glycerol to the value-added products 1,2-propanediol, ethanol, single cell oil, specialty polyunsaturated fatty acids, biosurfactants, and organic acids. Information on the impurities of crude glycerol from different industrial processes is also included.     

Screening for suitable solvents as substrate carriers for the microbial side-chain cleavage of sitosterol using microtitre plates

The microwell-scale approach is widely used for screening purposes and one-pot biotransformations, but it has seldom been applied to whole cell multistep biotransformations and to organic solvent screening/non-conventional medium bioconversion processes, which is an issue of major relevance when bioconversion processes are addressed. The present study aims to fill in this gap by using 24-well microtitre plates as platforms for the screening of suitable organic solvents as substrate carriers for effective biocatalysis. The side-chain cleavage of sitosterol with resting cells of Mycobacterium sp. NRRL B-3805 was used as model system. Series of miscible and immiscible alcohols with primary, secondary and tertiary structure were tested as carriers of the hydrophobic substrate, thus ruling out the effect of functionality on biocatalytic activity.Results suggest that microtitre plates may be used for solvent selection in complex bioconversion systems. The highest bioconversion yields were observed when methanol and ethanol were used as substrate carriers. An empirical correlation could be established between overall catalytic activity and physicochemical properties of the solvents.     

Whole-cell bioconversion of β-sitosterol in aqueous–organic two-phase systems

The selective cleavage of the β-sitosterol side-chain by free Mycobacterium sp. NRRL B-3805 cells was used as a model system for the study of solvent effects in a whole-cell bioconversion in two phase aqueous–organic media. This multi-step degradation pathway leads to the production of 4-androstene-4,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD) as a minor product. In an attempt to correlate the substrate and cell partition effects and solvent hydrophobicity (log P) with biocatalytic activity, 15 carboxylic acid esters with log P values between 3 and 10 were screened. The results indicated that the toxicity of the tested solvents in this system could not be correlated to their log P, but seemed to depend on their ability to accumulate in the cells, as these showed a strong affinity towards the organic phase. Different solvent/aqueous ratios and hydrodynamic conditions were further tested in the solvent systems (phthalates) showing significant biodegradation activity. The bioconversion rate was generally not much affected by the stirring speed in the employed range (150–300 rpm) but was strongly influenced by the aqueous/organic phase ratio. Results suggest that the bioconversion takes place at the interphase, its rate being possibly limited by mass transport inside the organic phase.     

Olive mill wastewater remediation by means of Pleurotus ostreatus

Results of a research program on raw olive-mill wastewater (OMW) bioremediation are presented. Bioremediation experiments have been carried out both in an airlift bioreactor and in aerated flasks, using Pleurotus ostreatus. The process was investigated under controlled non-sterile operating conditions, representative of industrial operation. Growth of P. ostreatus as well as polyphenols conversion were assessed. OMW bioconversion was characterized in terms of total organic carbon, polyphenols concentration, phenol oxidase activity, extent of decolourization and pH as a function of time. Results demonstrate that: P. ostreatus effectively grows on raw OMW; polyphenols abatement is controlled by the availability of nutrients and can be as large as 95%; bioconversion of non-sterilized OMW does not result into appreciable decolourization of the liquid medium. The use of an internal loop airlift bioreactor as a candidate for the full-scale implementation of an OMW aerobic bioremediation process is demonstrated.     

Bioconversion of organic carbon to CH4 and CO2

The activities of populations in complex anaerobic microbial communities that perform complete bioconversion of organic matter to CH₄ and CO₂ are reviewed. Species of eubacteria produce acetate, H₂, and CO₂ from organic substrates, and methanogenic species of archaebacteria transform the acetate, H₂, and CO₂ to CH₄. The characteristics and activities of the methanogenic bacteria are described. The impact of the use of H₂ by methanogens on the fermentations that produce acetate, H₂, and CO₂ and the importance of syntrophy in complete bioconversion are discussed.     

A multiphasic hollow fiber reactor for the whole-cell bioconversion of 2-methyl-1,3-propanediol to (r)-beta-hydroxyisobutyric acid

This paper describes the bioconversion of 2-methyl-1,3-propanediol to (R)-beta-hydoxyisobutyric acid (HIBA) by Acetobacter ALEI in a hollow fiber membrane bioreaction system arrangement that allows the integration of three liquid phases: the aqueous bioconversion phase, the organic phase consisting of a solution of trioctyl phosphine oxide (TOPO) in isooctane, and the third phase consisting of a basic stripping solution that allows reextraction of HIBA from the organic phase. A comparison of HIBA mass transfer experiments was carried out in the membrane reactor with two and three phases for different pH and TOPO concentrations. The use of the three-phase arrangement allows the extraction of high quantities of HIBA from the aqueous medium (higher than 85%) independently of the pH, whereas in the two-phase system the percentage of HIBA extracted from the aqueous medium was lower, 42% in the best case, and strongly influenced by the pH. The percentage of the extractive agent TOPO in the organic phase influenced on the mass transfer rate in both bi- and triphasic arrangements. By simply integrating the re-extraction phase in the system it was possible to increase the extraction yield by 2-fold, reduce the amount of TOPO by 4-fold, and operate at the more favorable pH 4. A bioconversion experiment was done in these conditions (pH = 4, TOPO = 5%) to confirm the advantages of including the third stripping solution. Fed-batch operation of the triphasic membrane reactor was maintained for more than 20 h, reaching an HIBA concentration in the stripping solution of 29 g L(-)(1).     

Bioconversion of waste paper materials to sugars: an application illustrating the environmental benefit of enzymes

Recycling of waste materials into useful products is very topical not only to protect natural resources, but also to limit environmental pollution. The enzymatically catalyzed bioconversion of organic based waste such as used paper materials to soluble sugars like glucose can be performed in an environmental-friendly way. A basic experiment is proposed to show how different paper materials exhibit varying susceptibilities towards cellulase catalyzed saccharification, and that this approach can be applied by biochemistry or biotechnology students in the bioconversion of different cellulose related waste materials.     

Development of recombinant Streptomyces for biotechnological and environmental uses

Recombinant DNA techniques for manipulation of genes in Streptomyces are well developed, and currently there is a high level of activity among researchers interested in applying molecular cloning and protoplast fusion techniques to strain development within this commercially important group of bacteria. A number of efficient plasmid and phage vector systems are being used for the molecular cloning of genes, primarily those encoding antibiotic biosynthesis enzymes, but also for a variety of other bioactive proteins and enzymes of known or potential commercial value. In addition, cloning aimed at constructing specialized bioconversion strains for use in the production of chemicals from organic carbon substrates is underway in numerous laboratories. This review discusses the current status of research involving recombinant DNA technologies applied to biotechnological applications using Streptomyces. The topic of potential environmental uses of recombinant Streptomyces is also reviewed, as is the status of current research aimed at assessing the fate and effects of recombinant Streptomyces in the environment. Also summarized is recent research that has confirmed that genetic exchange occurs readily among Streptomyces in the soil environment and which has shown the potential for exchange between recombinant Streptomyces and native soil bacteria.     

Reversed micelle solvents as tools of enzyme purification and enzyme-catalyzed conversion

Reversed micelle solvents represent nanometer-sized aqueous droplets stabilized by surfactants inside the bulk organic solvents. The aqueous cores can host various hydrophilic solutes, including bioactive substances thus revealing a challenge to the biotechnology's needs of the safe media for bioseparations and bioconversions. This review discusses the structure and the properties of reversed micelle solvents in view of the parameters that can be easily operated in technology to achieve safe liquid-liquid extraction of proteins/enzymes or bioconversion of hydrophobic substrates. The paper highlights the importance of how the reversed micelle microenvironment should be arranged with respect to the preservation of the activity of the enzyme as target product or biocatalyst. The main aspects are demonstrated with own experimental results on alpha-amylase purification and lipase-catalyzed esterification using cationic reversed micelle solvents. The trials of performing continuous processes involving reversed micellar separation and reaction media are also reviewed and the current problems are addressed.     

Enzymology and Genetics of Halogenating Enzymes from Bacteria

This paper discusses the properties of bacterial haem-containing and non-haem haloperoxidases, their involvement in the biosynthesis of halometabolites and their use in bioconversion. The very low peroxidase activity of bacterial non-haem haloperoxidases, their stability at high temperature and over a wide pH-range makes them particularly suited for use in the bromination of organic compounds. The chloroperoxidase from Pseudomonas pyrrocinia is the only haloperoxidase showing substrate specificity and regioselectivity. The genes of one chloro- and one bromoperoxidase could be cloned. The corresponding enzymes can now be produced in large amounts and at low costs.     

Nitrogen – a guide element in the bioconversion of lignocellulosics

Several balanced experiments of protein enrichment have shown that if ammonia is the sole N source in the bioconversion of lignocellulosics, significant data on the process can either be received from the N consumption determined, or from fixed organic nitrogen. Nitrogen can be a guide element for such data as cell biomass, utilized substrate, degree of bioconversion, specific substrate consumption coefficient, crude protein and crude protein yield, which are all necessary for the classification of fungi and substrates as well as for process characterization and optimization.     

Phyto-bioconversion of hard coal in the Cynodon dactylon/coal rhizosphere

Fundamental processes involved in the microbial degradation of coal and its derivatives have been well documented. A mutualistic interaction between plant roots and certain microorganisms to aid growth of plants such as Cynodon dactylon (Bermuda grass) on hard coal dumps has recently been suggested. In the present study coal bioconversion activity of nonmycorrhizal fungi was investigated in the C. dactylon/coal rhizosphere. Fungal growth on 2% Duff-agar, gutation formation on nitric acid treated coal and submerged culture activity in nitrogen-rich and -deficient broth formed part of the screening and selection of the fungi. The selected fungal isolates were confirmed to be found in pristine C. dactylon/coal rhizosphere. To simulate bioconversion, a fungal aliquot of this rhizosphere was used as inoculum for a Perfusate fixed bed bioreactor, packed with coal. The results demonstrate an enhanced coal bioconversion facilitated by low molecular weight organics and the bioconversion of coal may be initiated by an introduction of nitrogen moieties to the coal substrate. These findings suggest a phyto-bioconversion of hard coal involving plant and microbes occurring in the rhizosphere to promote the growth of C. dactylon. An understanding of this relationship can serve as a benchmark for coal dumps rehabilitation as well as for the industrial scale bioprocessing of hard coal.     

Microbial Conversion of alpha-Ionone, alpha-Methylionone, and alpha-Isomethylionone

alpha-Ionone, alpha-methylionone, and alpha-isomethylionone were converted by Aspergillus niger JTS 191. The individual bioconversion products from alpha-ionone were isolated and identified by spectrometry and organic synthesis. The major products were cis-3-hydroxy-alpha-ionone, trans-3-hydroxy-alpha-ionone, and 3-oxo-alpha-ionone. 2,3-Dehydro-alpha-ionone, 3,4-dehydro-beta-ionone, and 1-(6,6-dimethyl-2-methylene-3-cyclohexenyl)-buten-3-one were also identified. Analogous bioconversion products from alpha-methylionone and alpha-isomethylionone were also identified. From results of gas-liquid chromatographic analysis during the fermentation, we propose a metabolic pathway for alpha-ionones and elucidation of stereochemical features of the bioconversion.     

Microbial Stereoselective Oxidation of 2-methyl-1,3-propanediol to (R)-β-hydroxyisobutyric Acid in Aqueous/organic Biphasic Systems

The aim of this work was to evaluate (R)-g-hydroxyisobutyric acid (HIBA) production by microbial stereoselective oxidation of 2-methyl-1,3 propanediol under different conditions, and to compare the performance of this bioconversion in traditional aqueous media and aqueous/organic biphasic media. The oxidation is a two-step reaction with hydroxyisobutanal as an intermediate. Among the operational factors tested, pH and aeration were those, which most significantly affected the biocatalytic activity. Enantiomeric excesses higher than 95% were consistently obtained. For substrate concentrations above 50 mg ml^-1 a slight substrate inhibition was observed. Product inhibition was much stronger, and together with the decrease of the pH during the bioconversion was the most important limiting factor in long-term bioconversions. Kinetic parameters were determined for different pH values. A compromise pH value of 4 was determined to be the optimum for HIBA production and simultaneous extraction with an organic phase of trioctyl phosphine oxide (TOPO) in isooctane.     

Protein enrichment in plant by fusaria

Five micro fungi of the type Fusaria were investigated for the bioconversion of agricultural piant wastes. One strain was favoured for protein enrichment in heat-pretreated straw, also improving digestibility in the fodder produced. The influence of the chitin content in the fodder was studied, and for calculating raw-protein from the organic nitrogen content an additional factor of 0.92 was proposed to the known factor of 6.25. For the application of Fusaria strains in bioconversion processes a prognosis a prognosis was offered.     

Transformation of steroids by actinobacteria: A review

Development of pharmaceutical industry is currently aimed at introducing biotechnological processes on a large-scale and thereby replacing multiple-stage chemical syntheses. Actinobacteria are efficient biocatalysts of many processes involving steroid bioconversion, which hold considerable importance for the synthesis of hormonal drugs. The potential to catalyze the conversion of a broad spectrum of steroid substrates makes it possible to expect efficient utilization of these microorganisms in development of new technologies of manufacturing steroid pharmaceutical substances. The review is a first attempt to systematize data on the potential of actinobacteria to catalyze diverse reactions of steroid transformation (such as hydroxylation, introduction and reduction of double bonds, oxidation of steroid alcohols, reduction of ketones, side chain de-esterification and degradation, etc.), with emphasis on processes of practical biotechnological importance and progress in steroid bioconversion over the last ten years.     

Microbial Stereoselective Oxidation of 2-methyl-1,3-propanediol to (R)-β-hydroxyisobutyric Acid in Aqueous/organic Biphasic Systems

The aim of this work was to evaluate (R)-&#103-hydroxyisobutyric acid (HIBA) production by microbial stereoselective oxidation of 2-methyl-1,3 propanediol under different conditions, and to compare the performance of this bioconversion in traditional aqueous media and aqueous/organic biphasic media. The oxidation is a two-step reaction with hydroxyisobutanal as an intermediate. Among the operational factors tested, pH and aeration were those, which most significantly affected the biocatalytic activity. Enantiomeric excesses higher than 95% were consistently obtained. For substrate concentrations above 50 mg ml^?1 a slight substrate inhibition was observed. Product inhibition was much stronger, and together with the decrease of the pH during the bioconversion was the most important limiting factor in long-term bioconversions. Kinetic parameters were determined for different pH values. A compromise pH value of 4 was determined to be the optimum for HIBA production and simultaneous extraction with an organic phase of trioctyl phosphine oxide (TOPO) in isooctane.     

Transformation of steroids by actinobacteria: a review

Development of pharmaceutical industry is currently aimed at introducing biotechnological processes on a large-scale and thereby replacing multiple-stage chemical syntheses. Actinobacteria are efficient biocatalysts of many processes involving steroid bioconversion, which hold considerable importance for the synthesis of hormonal drugs. The potential to catalyze the conversion of a broad spectrum of steroid substrates makes it possible to expect efficient utilization of these microorganisms in development of new technologies of manufacturing steroid pharmaceutical substances. The review is a first attempt to systematize data on the potential of actinobacteria to catalyze diverse reactions of steroid transformation (such as hydroxylation, introduction and reduction of double bonds, oxidation of steroid alcohols, reduction of ketones, side chain de-esterification and degradation, etc.), with emphasis on processes of practical biotechnological importance and progress in steroid bioconversion over the last ten years.