The mass—Energy balance of anaerobic methane production

A theory was developed for the mass and energy balance of microbial processes, with special reference to the anaerobic production of methane. Interrelations of the bioengineering parameters of the process were delineated substrate quality, biodegrability and biological effciency of anaerobic processing of complex organic waste substrates. Application of the method is demonstrated on practical examples.     

Transgenesis and yield: what are our targets?

Plant metabolic engineering has been used to generate a wide range of transgenic lines in which specific metabolic steps have been targeted. Attempts to increase yield of some agronomically important crops using this approach have highlighted the inherent complexities of modulating plant metabolism. In light of the recent findings by Regierer et al. this article addresses the major challenges faced with respect to enhancing yield through transgenesis.     

Ammonia–methane two-stage anaerobic digestion of dehydrated waste-activated sludge

The study investigated methane production from dehydrated waste-activated sludge (DWAS) with approximately 80% water content under thermophilic conditions. The repeated batch-wise treatment of DWAS using methanogenic sludge unacclimated to high concentrations of ammonia, increased the ammonia production up to 7,600 mg N per kilogram total wet sludge of total ammonia concentration, and stopped the methane production. Investigation revealed that the loading ratio of DWAS for methanogenic sludge influences anaerobic digestion. Methane production significantly decreased and ammonia concentration increased with the increase in loading ratio of DWAS. Since the semicontinuous culture revealed that approximately 50% of organic nitrogen in DWAS converted to ammonia at sludge retention time (SRT) after 4 days at 37 degrees C and 1.33 days at 55 degrees C, the previous stripping of the ammonia produced from DWAS was carried out. The stripping of ammonia increased methane production significantly. This ammonia-methane two-stage anaerobic digestion demonstrated a successful methane production at SRT 20 days in the semicontinuous operation using a laboratory-scale reactor system.     

Spatial–temporal patterns of methane dynamics in Lake Taihu

Many European lakes are monitored according to the EU Water Framework Directive (WFD), with focus on phytoplankton biomass and species composition. However, the low-frequency WFD monitoring may miss short-term phytoplankton changes. This is an important issue because short-term extreme meteorological events (heat waves and heavy rain) are predicted to increase in frequency and intensity with climate change. We used records from Lake Mondsee (Austria) from 2009 to 2015 to test if a reduction from monthly to seasonal sampling affected the average annual phytoplankton biovolume. Furthermore, we combined inverted light microscopy, FlowCAM and flow cytometry to estimate the effect of sampling during extreme events on average phytoplankton biovolume. Relative to monthly sampling, seasonal sampling significantly overestimated phytoplankton biomass. A heat wave in 2015 and two episodes of heavy rain in 2015 and 2016 caused species-specific changes; biovolumes of chlorophytes and the filamentous cyanobacterium Planktothrix rubescens (De Candolle ex Gomont) Anagnostidis & Komárek increased significantly during the heat wave. Using live material with FlowCAM and flow cytometry, we detected small and fragile cells and colonies that were either ignored or underrepresented by analysing fixed samples with light microscopy. We suggest a modified sampling and analysis strategy to capture short-term changes within the phytoplankton community.     

Do increases in agricultural yield spare land for nature?

Feeding a rapidly expanding human population will require a large increase in the supply of agricultural products during the coming decades. This may lead to the transformation of many landscapes from natural vegetation cover to agricultural land use, unless increases in crop yields reduce the need for new farmland. Here, we assess the evidence that past increases in agricultural yield have spared land for wild nature. We investigated the relationship between the change in the combined energy yield of the 23 most energetically important food crops over the period 1979–1999 and the change in per capita cropland area for 124 countries over the same period. Per capita area of the 23 staple crops tended to decrease in developing countries where large yield increases occurred. However, this was counteracted by a tendency for the area used to grow crops other than staples to increase in the countries where staple crop yields increased. There remained a weak tendency in developing countries for the per capita area of all cropland to decline as staple crop yield increased, a pattern that was most evident in developing countries with the highest per capita food supplies. In developed countries, there was no evidence that higher staple crop yields were associated with decreases in per capita cropland area. This may be because high agricultural subsidies in developed countries override any land-sparing pattern that might otherwise occur. Declines in the area of natural forest were smaller in countries where the yield of staple crops increased most, when the negative effects of human population increases on forest area were controlled for. Our results show that land-sparing is a weak process that occurs under a limited set of circumstances, but that it can have positive outcomes for the conservation of wild nature.     

The role of vegetation in methane flux to the atmosphere: should vegetation be included as a distinct category in the global methane budget?

Currently, the global annual flux of methane (CH₄) to the atmosphere is fairly well constrained at ca. 645 Tg CH₄ year^?1. However, the relative magnitudes of the fluxes generated from different natural (e.g. wetlands, deep seepage, hydrates, ocean sediments) and anthropogenic sources remain poorly resolved. Of the identified natural sources, the contribution of vegetation to the global methane budget is arguably the least well understood. Historically, reviews of the contribution of vegetation to the global methane flux have focused on the role of plants as conduits for soil-borne methane emissions from wetlands, or the aerobic production of methane within plant tissues. Many recent global budgets only include the latter pathway (aerobic methane production) in estimating the importance of terrestrial vegetation to atmospheric CH₄ flux. However, recent experimental evidence suggests several novel pathways through which vegetation can contribute to the flux of this globally important, trace greenhouse gas (GHG), such as plant cisterns that act as cryptic wetlands, heartwood rot in trees, the degradation of coarse woody debris and litter, or methane transport through herbaceous and woody plants. Herein, we synthesize the existing literature to provide a comprehensive estimate of the role of modern vegetation in the global methane budget. This first, albeit uncertain, estimate indicates that vegetation may represent up to 22 % of the annual flux of methane to the atmosphere, contributing ca. 32–143 Tg CH₄ year^?1 to the global flux of this important trace GHG. Overall, our findings emphasize the need to better resolve the role of vegetation in the biogeochemical cycling of methane as an important component of closing the gap in the global methane budget.     

Comparative mapping in F2∶3 and F6∶7 generations of quantitative trait loci for grain yield and yield components in maize

This study was conducted to compare maize quantitative trait loci (QTL) detection for grain yield and yield components in F₂₃ and F₆₇ recombinant inbred (RI) lines from the same population. One hundred and eighty-six F₆₇ RIs from a Mo17×H99 population were grown in a replicated field experiment and analyzed at 101 loci detected by restriction fragment length polymorphisms (RFLPs). Single-factor analysis of variance was conducted for each locus-trait combination to identify QTL. For grain yield, 6 QTL were detected accounting for 22% of the phenotypic variation. A total of 63 QTL were identified for the seven grain yield components with alleles from both parents contributing to increased trait values. Several genetic regions were associated with more than one trait, indicating possible linked and/or pleiotropic effects. In a comparison with 150 F₂₃ lines from the same population, the same genetic regions and parental effects were detected across generations despite being evaluated under diverse environmental conditions. Some of the QTL detected in the F₂₃ seem to be dissected into multiple, linked QTL in the F₆₇ generation, indicating better genetic resolution for QTL detection with RIs. Also, genetic effects at QTL are smaller in the F₆₇ generation for all traits.Abbreviations RFLPs Restriction fragment length polymorphisms - QTL quantitative trait loci - RIs recombinant inbreds Journal Paper no. J-16261 of the Iowa Agric and Home Economics Exp Stn Project no. 3134     

Quantitative trait loci for yield and yield components in an Oryza sativa×Oryza rufipogon BC2F2 population evaluated in an upland environment

An advanced backcross breeding strategy was used to identify quantitative trait loci (QTLs) associated with eight agronomic traits in a BC₂F₂ population derived from an interspecific cross between Caiapo, an upland Oryza sativa subsp. japonica rice variety from Brazil, and an accession of Oryza rufipogon from Malaysia. Caiapo is one of the most-widely grown dryland cultivars in Latin America and may be planted as a monoculture or in a multicropping system with pastures. The objectives of this study were: (1) to determine whether trait-enhancing QTLs from O. rufipogon would be detected in 274 BC₂F₂ families grown under the drought-prone, acid soil conditions to which Caiapo was adapted, (2) to compare the performance with and without pasture competition, and (3) to compare putative QTL-containing regions identified in this study with those previously reported for populations adapted to irrigated, low-land conditions. Based on analyses of 125 SSLP and RFLP markers distributed throughout the genome and using single-point, interval, and composite interval mapping, two putative O. rufipogon derived QTLs were detected for yield, 13 for yield components, four for maturity and six for plant height.We conclude that advanced backcross QTL analysis offers a useful germplasm enhancement strategy for the genetic improvement of cultivars adapted to stress-prone environments. Although the phenotypic performance of the wild germplasm would not suggest its value as a breeding parent, it is noteworthy that 56% of the trait-enhancing QTLs identified in this study were derived from O. rufipogon. This figure is similar to the 51% of favorable QTLs derived from the same parent in crosses with a high-yielding hybrid rice cultivar evaluated under irrigated conditions in a previous study. In conclusion, parallel studies in rice using AB-QTL analysis provide increasing evidence that certain regions of the rice genome are likely to harbor genes of interest for plant improvement in multiple environments. Received: 3 September 1999 / Accepted: 16 May 2000     

Does succinate oxidation yield FADH(2) or ubiquinol?

Most textbooks still show the oxidation of succinate in the tricarboxylic acid (TCA) cycle resulting in the reduction of FADH(2). Such a presentation does not reflect the reaction catalysed by the enzyme in vivo or in vitro, does not simplify the treatment of the reaction, and is unnecessarily misleading and confusing.     

Does dissolved organic carbon regulate biological methane oxidation in semiarid soils?

In humid ecosystems, the rate of methane (CH₄) oxidation by soil‐dwelling methane‐oxidizing bacteria (MOB) is controlled by soil texture and soil water holding capacity, both of which limit the diffusion of atmospheric CH₄ into the soil. However, it remains unclear whether these same mechanisms control CH₄ oxidation in more arid soils. This study was designed to measure the proximate controls of potential CH₄ oxidation in semiarid soils during different seasons. Using a unique and well‐constrained 3‐million‐year‐old semiarid substrate age gradient, we were able to hold state factors constant while exploring the relationship between seasonal potential CH₄ oxidation rates and soil texture, soil water holding capacity, and dissolved organic carbon (DOC). We measured unexpectedly higher rates of potential CH₄ oxidation in the wet season than the dry season. Although other studies have attributed low CH₄ oxidation rates in dry soils to desiccation of MOB, we present several lines of evidence that this may be inaccurate. We found that soil DOC concentration explained CH₄ oxidation rates better than soil physical factors that regulate the diffusion of CH₄ from the atmosphere into the soil. We show evidence that MOB facultatively incorporated isotopically labeled glucose into their cells, and MOB utilized glucose in a pattern among our study sites that was similar to wet‐season CH₄ oxidation rates. This evidence suggests that DOC, which is utilized by MOB in other environments with varying effects on CH₄ oxidation rates, may be an important regulator of CH₄ oxidation rates in semiarid soils. Our collective understanding of the facultative use of DOC by MOB is still in its infancy, but our results suggest it may be an important factor controlling CH₄ oxidation in soils from dry ecosystems.     

Do nitrogen fertilizers stimulate or inhibit methane emissions from rice fields?

In rice cultivation, there are controversial reports on net impacts of nitrogen (N) fertilizers on methane (CH ₄) emissions. Nitrogen fertilizers increase crop growth as well as alter CH ₄ producing (Methanogens) and consuming (Methanotrophs) microbes, and thereby produce complex effects on CH ₄ emissions. Objectives of this study were to determine net impact of N fertilizers on CH ₄ emissions and to identify their underlying mechanisms in the rice soils. Database was obtained from 33 published papers that contained CH ₄ emissions observations from N fertilizer (28–406 kg N ha^?1) treatment and its control. Results have indicated that N fertilizers increased CH ₄ emissions in 98 of 155 data pairs in rice soils. Response of CH ₄ emissions per kg N fertilizer was significantly (P < 0.05) greater at < 140 kg N ha^?1 than > 140 kg N ha^?1 indicating that substrate switch from CH ₄ to ammonia by Methanotrophs may not be a dominant mechanism for increased CH ₄ emissions. On the contrary, decreased CH ₄ emission in intermittent drainage by N fertilizers has suggested the stimulation of Methanotrophs in rice soils. Effects of N fertilizer stimulated Methanotrophs in reducing CH ₄ emissions were modified by the continuous flood irrigation due to limitation of oxygen to Methanotrophs. Greater response of CH ₄ emissions per kg N fertilizer in urea than ammonia sulfate probably indicated the interference of sulfate in the CH ₄ production process. Overall, response of CH ₄ emissions to N fertilizers was correlated with N‐induced crop yield (r = +0.39; P < 0.01), probably due to increased carbon substrates for Methanogens. Using CH ₄ emission observations, this meta‐analysis has identified dominant microbial processes that control net effects of N fertilizers on CH ₄ emissions in rice soils. Finally, we have provided a conceptual model that included microbial processes and controlling factors to predict effects of N fertilizers on CH ₄ emissions in rice soils.     

Heterokaryosis inPolyporus ostreiformis for improved yield of exo-1,4-α-d-glucosidase

An amylolytic strain ofPolyporus ostreiformis was subjected to multistep mutagenic treatment and a heterokaryotic mutant was finally selected which produced exo-1,4-α-d-glucosidase in a yield of 2.54 U/mL against the parental yield of 0.42 U/mL. The crude enzyme extract of the mutant was used to hydrolyze soluble starch, maltose and amylopectin and chromatography of the hydrolyzates revealed exo-1,4-α-D-glucosidase activity predominant in the enzyme system.     

Is maximization of molar yield in metabolic networks favoured by evolution?

Stoichiometric analysis of metabolic networks allows the calculation of possible metabolic flux distributions in the absence of kinetic data. In order to predict which of the possible fluxes are present under certain conditions, additional constraints and optimization principles can be applied. One approach of calculating unknown fluxes (frequently called flux balance analysis) is based on the optimality principle of maximizing the molar yield of biotransformations. Here, the relevance and applicability of that approach are examined, and it is compared with the principle of maximizing pathway flux. We discuss diverse experimental evidence showing that, often, those biochemical pathways are operative that allow fast but low-yield synthesis of important products, such as fermentation in Saccharomyces cerevisiae and several other yeast species. Together with arguments based on evolutionary game theory, this leads us to the conclusion that maximization of molar yield is by no means a universal principle.     

Assessment of ICCV 2?×?JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTL for seed yield and yield components

Salinity is a complex abiotic stress and understanding the physiological and genetic basis of salinity tolerance is a prerequisite for improving existing crop cultivars. Experiments were undertaken using 126 recombinant inbred lines from a cross between JG 62 (tolerant) and ICCV 2 (sensitive) to characterize traits related to seed yield differences under saline conditions and to map quantitative trait loci (QTL). The population segregated for flowering time and entries were separated into ??early?? and ??late?? phenology groups to undertake the analysis. In both groups seed yield varied under salinity, with seed number being the most closely related trait to yield. In contrast, seed yield was not related to 100-seed weight or flowering time. Shoot dry weight was positively correlated with seed yield in the early entries only, but had no significant relationship with seed number. The higher sensitivity to salinity of the early entries was related both to a smaller biomass and lesser seed number under saline conditions. A QTL for seed yield under saline conditions was found in linkage group 3 in the late group, and a cluster of QTL for seed yield components in linkage group 6, including a QTL for seed number which explained 37% of the variation. In contrast, no QTL for seed yield was found in the early group, but a QTL for seed number under saline conditions was found. These data indicate that salinity tolerance traits are linked to the degree of earliness in chickpea. Tolerance is determined by the success of reproductive sites in both early and late entries, which relates in part to constitutive traits, and by the capacity of maintaining growth in early-flowering lines only. This is the first report of QTL for seed yield and seed number in chickpea exposed to salinity.     

Soybean yield response to residual NO3−N and applied N

Summary During 1976 through 1978, 10N treatments (combinations of N application times and rates) were used in a corn study. Those treatments created different levels of soil NO ₃ ^– –N content that were well-suited to a study of the influence of residual NO ₃ ^– –N and applied N on soybean yield. In April 1979 we applied ammonium nitrate at rates of 0, 75, or 150 kg N/ha to three subplots formed from each of the whole plots (previous N treatment plots). With N fertilization in 1979, seed yield increased where the residual NO ₃ ^– –N amount was less than 190 kg/ha but decreased where the residual amount was greater than 190 kg/ha. As the NO ₃ ^– –N content in the soil increased by 1 kg/ha, the soybean yield increase due to N fertilization in 1979 decreased by approximately 4 kg/ha.Contribution no. 82-368-J, Dep. of Agronomy, Kansas Agric. Exp. Stn., Manhattan, KS 66506, USA     

Are elusive anaerobic pathways key methane sinks in eutrophic lakes and reservoirs?

Collectively, freshwaters constitute a significant source of methane to the atmosphere, and both methane production and methane oxidation can strongly influence net emissions. Anaerobic methane oxidation (AOM) is recognized as a strong regulator of marine methane emissions and appreciation of AOM’s importance in freshwater is growing. In spite of this renewed interest, recent work and reactive-transport modeling results we present in this paper point to unresolved pathways for AOM. Comparison of recent observations from a eutrophic reservoir, Lacamas Lake, with predictions of a 1D steady-state model of water column methane dynamics indicates that high rates of methane oxidation measured via bottle assays cannot be explained with conventional electron acceptors (O₂, NO₂ ^?, NO₃ ^?, SO₄ ^2?, Mn⁴⁺, and Fe³⁺). Reactive-transport modeling suggests that solute oxidant concentrations at the thermocline would have to be around 10 times higher than observed to explain the measured methane consumption. Organic acids—a major constituent of organic matter—may account for part of this unexplained AOM given their abundance in eutrophic systems, although the details of these pathways remain elusive (e.g., which species are involved, seasonal renewal of reduced species, contribution of particulate versus dissolved phases). We point to several observations consistent with organic acid-mediated AOM, both in Lacamas Lake and in other systems. Nevertheless, direct evidence of this pathway is still lacking and testing for this remains an important direction for future work. To this end, we identify several new avenues of research that would help quantify the role of organic acid-mediated AOM relative to other electron acceptors.