玉米有丝分裂染色体上玉米BAC探针的FISH杂交体系的构建

本研究分别探讨了玉米和水稻基因组c 0t DNA对探针的封阻、杂交后洗脱的严谨度、杂交液中FAD的浓度变化对BAC-FISH杂交的影响;探讨了玉米BAC探针中重复序列含量对FISH信号的影响.初步形成了一套以玉米BAC探针在玉米有丝分裂染色体上进行FISH杂交的优化技术体系.结果表明,玉米基因组c 0t DNA对探针封阻的c 0t值应小于50;而降低杂交液中FAD浓度和适度控制杂交后洗脱的严谨度,尤其是使用水稻基因组的c 0t 100 DNA封阻探针重复序列对BAC-FISH杂交信号特异性的改善具有明显的效果;同时,验证了选择重复序列含量较少的玉米BAC作为FISH杂交的探针也是获得特异性杂交信号的重要条件.     

基因组原位杂交的新进展及其在植物中的应用

基因组原位杂交 ( Genomic in situ hybridization GISH)是 2 0世纪 80年代末发展起来的一种原位杂交技术。它最初应用于动物方面的研究[1 ] ,但很快被植物方面所借用 ,并且使用频率高于动物方面的研究。它采用来自一个物种的总基因组 DNA作为标记探针 ,用另一物种的总基因组 DNA以适当的浓度进行封阻 ,在靶染色体上进行原位杂交。在封阻DNA和标记 DNA探针之间 ,封阻 DNA优先与一般序列杂交 ,剩下的特异性序列主要被标记探针所杂交。在此基础上 ,人们先后发展了荧光基因组原位杂交、多色基因组原位杂交和比较基因组原位杂交等技术 ,…     

水稻BAC在玉米有丝分裂染色体上FISH杂交体系的构建

 以水稻细菌人工染色体(BAC)为探针在玉米有丝分裂的细胞学制片上进行荧光原位杂交(FISH),探讨玉米基因组C_ot DNA对BAC探针重复序列的封阻、杂交后洗脱的严谨度、杂交液中FAD的浓度变化、水稻BAC探针的特异性重复序列的封阻对FISH杂交信号特异性的影响.初步形成了一套以水稻BAC探针在玉米有丝分裂染色体上进行BAC-FISH杂交的优化技术体系.研究结果表明：使用玉米基因组C_ot DNA来封阻水稻BAC探针的重复序列玉米基因组C _ot DNA的C_ot值应小于50,同时还需根据不同探针调整C_ot DNA的C_ot值及与探针的比例;而降低杂交液中FAD浓度和适度控制杂交后洗脱的严谨度,尤其是使用水稻BAC探针本身特异的重复序列的封阻对BAC-FISH杂交信号特异性的改善具有较好的效果.     

基因组原位杂交鉴定栽培稻与广西药用野生稻杂交后代染色体构成

广西药用野生稻 (Oryza officinalis)具有多种优良特性 ,是水稻遗传育种的重要种质资源之一。本实验以 Biotin标记的药用野生稻总 DNA作探针 ,未标记的栽培稻 (Oryzasativa)总 DNA作封阻 ,以 HRP- DAB系统进行信号检测 ,对栽培稻与广西药用野生稻的杂种F1植株的根尖染色体制片进行基因组原位杂交。采用封阻比例 1∶ 2 0～ 30时 ,杂交效果较为理想 ,药用野生稻的 1 2条染色体显深棕色 ,而栽培稻的 1 2条染色体着色很浅。在有丝分裂间期的细胞核中 ,也检测到大量杂交信号分布于核的周边。     

地高辛标记DNA探针杂交法检测Vero细胞DNA残留量的适用性验证及应用

目的对地高辛标记DNA探针杂交法检测人用狂犬病疫苗(Vero细胞)DNA残留量进行适用性验证及应用。方法对地高辛标记DNA探针杂交法检测人用狂犬病疫苗(Vero细胞)DNA残留量进行特异性、灵敏度及稳定性验证,并应用该方法检测3批人用狂犬病疫苗(Vero细胞)的DNA残留量。结果地高辛标记探针的标记效率为0.1 pg。验证结果显示探针与非同源DNA无杂交;最低检测限度为1 pg;探针在-20℃放置7个月后,检测灵敏度仍可达到1 pg;3批人用狂犬病疫苗(Vero细胞)中残留DNA含量均符合《中国药典》规定质量控制标准。结论地高辛标记DNA探针杂交法特异性、灵敏度好,结果稳定,适用于人用狂犬病疫苗(Vero细胞)中Vero细胞DNA残留量的检测及疫苗生产过程和其成品的质量控制,对其他以Vero细胞为基质的病毒性疫苗质量控制具有借鉴意义。     

基因组原位杂交鉴定栽培稻与广西药用野生稻杂交后代染色体构成

广西药用野生稻（Ｏｒｙｚａ ｏｆｆｉｃｉｎａｌｉｓ）具有多种优良特性,是水稻遗传育种的重要种质资源之一。本实验以ｂｉｏｔｉｎ标记的的药用野生稻总ＤＮＡ作探针,未标记的载培稻（Ｏｒｙｚａｘａｔｉｖａ）总ＤＮＡ作封阻,以ＨＰ－ＤＡＢ系统进行信号检测,对栽培稻与广西药用野生稻的杂种Ｆ１植株的根尖染色体制片进行了基因组原位杂交。采用封阻比例１：２０～３０时,杂交效果较９为理想,药用野生稻的１２条染色体显深     

基因组原位杂交鉴定牛筋草AA基因组在穇子染色体上的分布及探针长度优化方法

采用基因组原位杂交(Genomic in situ hybridization,GISH)方法研究了牛筋草(Eleusine indica)AA基因组在穇子(E.coracana)染色体上的分布,并探讨了AA、BB基因组的同源关系。用超声波破碎法进行预剪切,以缺口平移法标记的牛筋草总DNA为探针,BB基因组的E.floccifolia(Forssk.)Spreng.总DNA为封阻,与AABB基因组穇子的中期染色体进行杂交。结果表明,牛筋草AA基因组分布在穇子的18条染色体上。不加封阻或加过量封阻均不能鉴别AA基因组,说明AA和BB基因组间的分化程度不大,双方共享的重复序列较多。牛筋草与E.floccifolia总DNA分别用超声波破碎2 min和3 min后,可得到峰值为300-750 bp的DNA片段,这说明不同物种的超声波破碎时间需要调整,以获得合适长度的探针。     

PCR-微孔板杂交-ELISA法检测巨细胞病毒感染

建立PCR-微孔板杂交-ELISA法检测人血清标本中巨细胞病毒DNA.将5'端标记生物素的PCR扩增产物与5'端标记地高辛的探针呈液相混合,90℃ 2min,55℃,1min杂交.杂交后产物被链霉亲和素酶标板固定,经酶标记抗地高辛标记抗体结合显色.本试剂检测灵敏度为2.5×104 copies/mL,比传统PCR和ELISA敏度性高,特异性强,与单纯疱疹病毒Ⅰ型和Ⅱ型,风疹病毒、EB病毒、腺病毒核酸无交叉反应,批内CV为8.9%,批间CV为10.5%.该法可用于定性和定量检测HCMV DNA.     

一粒小麦-葡萄牙野燕麦远缘杂交后代衍生系GISH研究

以一粒小麦-葡萄牙野燕麦杂交后代一粒葡为实验材料,以地高辛标记的葡萄牙野燕麦基因组DNA为探针、一粒小麦基因组DNA为封阻对一粒葡及其衍生系根尖染色体进行基因组原位杂交(GISH)分析,探讨了影响一粒葡GISH效果的主要因素.建立并优化了一粒葡GISH分析的实验体系,即探针DNA与封阻DNA比例为1∶50时可有效分开双方染色体组.优化GISH分析显示,在一粒葡后代衍生系中均检测到燕麦染色质的存在,且不同选系间带有燕麦染色体的数目不同,进一步证明一粒葡是一粒小麦-葡萄牙野燕麦远缘杂交的后代.     

地高辛标记的Northern blot检测鼠疫菌sRNA

[目的]随着高通量测序方法的应用,越来越多的sRNA (small non-coding RNA,sRNA)需验证.本研究建立用地高辛标记Northern blot检测鼠疫菌sRNA的技术,为细菌sRNA验证提供一种灵敏、特异的方法.[方法]在低铁条件下,提取鼠疫菌总RNA,10％ dPAGE分离后电转到尼龙膜上并用紫外线交联RNA.膜经地高辛标记RyhB1或RyhB2寡核苷酸RNA探针过夜杂交后洗脱、封闭和免疫检测,最后曝光显影.[结果]地高辛标记的Northern blot曝光时间为20 s-3 min,RyhB1或RyhB2检测灵敏度分别为0.005 μg和0.05 μg.RyhB1或RyhB2探针特异性好,相互间无交叉反应.带正电或中性的尼龙膜都适用于杂交反应.RNA探针在42℃-65℃内杂交均可,提高温度可减少非特异性反应;而DNA探针杂交温度需摸索.[结论]本研究成功构建一种地高辛标记Northern blot检测鼠疫菌sRNA技术,具有特异性好、灵敏度高、探针易保存、曝光时间短等优点,为细菌sRNA验证和功能研究提供有利工具.     

Modeling hybridization kinetics

Formation of complementary base pairs between nucleic acids over a short region (相似文献   

DNA-RNA hybridization.

Interest in nucleic acid hybridization stems mainly from its great power as a tool in biological research. It is used in several quite distinct ways. Because of the high degree of specificity that they show, hybridization techniques can be used to measure the amount of one specific sequence within a very heterogeneous mixture of sequences. Measurements of 1/10(6)-10(7) have been recorded. In extension of this, various properties of a specific sequence can often be studied. Secondly, because the kinetics of nucleic acid hybridization are quite well understood, it can be used to characterize both a pure sequence and a very complex mixture of sequences, like the genome of a vertebrate. Thirdly, again because of its specificity, it can be used to measure homologies between different populations of nucleic acids. Lastly, in conjunction with other techniques, it can be used as a basis for the fractionation of nucleic acid populations and the purification of specific sequences. Specific examples of these applications are given, with special reference to the organization of the genome in higher eukaryotes.     

Centrifugal cell hybridization

Centrifugation of cell suspensions containing two or several cell types at forces up to 2 million g results in several basic events in succession: 1. Intracellular stratification. 2. Extrusion of the most dense cell parts (nuclei or cytoplasmic components) and their penetration into an adjacent cell in the compact sediment. Such introduction of protoplasmic elements from one cell into another is considered as centrifugal hybridization and fusion of cells. It differs from other methods of cell hybridization by its selectivity for cell components. 3. Further intermingling and mixing of cells into a fused protoplasmic mass. 4. With continuing increase of centrifugal force fractions of subcellular components are formed from the protoplasmic mass. These components are presumably viable since cells are not exposed to chemical treatment. Morphological demonstration of hybridization is based on centrifuging microscopy and on labeling donor cells or recipient cells by staining or fluorescence. Genetic evidence can be provided by cultivation of hybrid cellsin vitro and their cloningin vivo.     

Plaque-based competitive hybridization

The authors have developed a simple, cost-saving experimental design, plaque-based competitive hybridization (PBCH), for genome-wide identification of genes differentially expressed in different tissues. PBCH offers advantages in comparison with other methods used in comparative genomics by combining the principles of differential hybridization with the subtractive hybridization. PBCH is particularly advantageous when libraries with few differences are to be analyzed. The authors demonstrate the use of PBCH by identifying 3 genes, up-regulated in the developing velvet antler of red deer (Cervus elaphus): ApoD, C011A2, and S100a1. The fidelity and sensitivity of PBCH is also shown: 1 specific clone among a library sample of 15,000 can be recognized. Possibilities for further utilizations are discussed.     

Interspecific hybridization inRibes

The genusRibes, 2n=16, consisting of over 150 shrubby species has been divided byRehder into 15 sections grouped into four subgenera. Data on interspecies crosses within and between these sections and subgenera made by previous workers and at East Malling are tabulated and discussed.Species within a section are morphologically similar and will usually cross, forming fertile hybrids; 33 such hybrids in 6 of the 15 sections are known. Inter-sectional and inter-subgeneric crosses between more unlike species often fail, but matur flowering plants have been obtained from crosses involving the following combinations: –Symphocalyx x Calobotrya, Symphocalyx x Eucoreosma, Calobotrya x Eucoreosma, Eucoreosma x Heritiera, Eucoreosma x Ribesia, Eugrossularia x Robsonia, Euberisia x Eugrossularia, Symphocalyx x Eugrossularia, Calobotrya x Eugrossularia, Eucoreosma x Eugrossularia, andRibesia x Eugrossularia. Of these, only the combinationsEugrossularia x Robsonia andCalobotrya x Eucoreosma show any fertility.On the basis of these results, it is suggested that a more natural classification ofRibes would be to retainRehder's subgeneraBerisia, Grossularia andGrossularioides, while creating from his sevenRibesia sections, six new subgenera, viz.Microsperma, Symphocalyx, Calobotrya (comprising the sectionsCalobotrya andEucoreosma), Cerophyllum, Heritiera, andRibesia. With this classification, in the light of present knowledge, all intra-sectional hybrids are fertile, intra-subgeneric hybrids at least partially fertile, and such inter-subgeneric hybrids as can be raised are sterile.     

Somatic hybridization in Petunia

Summary Two types of cytoplasmic hybrids were obtained by protoplast fusion. These contained either one or the other original parental nucleus and heteroplasmon, a mix of plasmons inducing cytoplasmic male sterility and fertility. In subsequent generations, following selfing, stable male sterile and male fertile lines segregated from single fertile cytoplasmic hybrid plants. These data demonstrated the existence of a heteroplasmic state in the somatic hybrids and the occurrence of cytoplasmic segregation of the heteroplasmon into homoplasmons following the first and the second meiotic cycles.Contribution from the Agricultural Research Organization, The Volcani Center, Division of Plant Genetics & Breeding, Bet Dagan, Israel. No. 275-E, 1979 series