Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds

Zoonotic pathogens often infect several animal species, and gene flow among populations infecting different host species may affect the biological traits of the pathogen including host specificity, transmissibility and virulence. The bacterium Campylobacter jejuni is a widespread zoonotic multihost pathogen, which frequently causes gastroenteritis in humans. Poultry products are important transmission vehicles to humans, but the bacterium is common in other domestic and wild animals, particularly birds, which are a potential infection source. Population genetic studies of C. jejuni have mainly investigated isolates from humans and domestic animals, so to assess C. jejuni population structure more broadly and investigate host adaptation, 928 wild bird isolates from Europe and Australia were genotyped by multilocus sequencing and compared to the genotypes recovered from 1366 domestic animal and human isolates. Campylobacter jejuni populations from different wild bird species were distinct from each other and from those from domestic animals and humans, and the host species of wild bird was the major determinant of C. jejuni genotype, while geographic origin was of little importance. By comparison, C. jejuni differentiation was restricted between more phylogenetically diverse farm animals, indicating that domesticated animals may represent a novel niche for C. jejuni and thereby driving the evolution of those bacteria as they exploit this niche. Human disease is dominated by isolates from this novel domesticated animal niche.     

Distribution and identification of red yeasts in deep-sea environments around the northwest Pacific Ocean

We isolated 99 yeast strains, including 40 red yeasts, from benthic animals and sediments collected from the deep-sea floor in various areas in the northwest Pacific Ocean. Comparing the yeast isolates from animals and sediments collected from shallow locations, the proportion of red yeasts differed considerably, comprising 81.5% and 10.6% of the isolates from animals and sediments, respectively. All of the red yeast isolates belonged to the genera Rhodotorula and Sporobolomyces. On the basis of morphological and physiological characteristics, the isolates were identified as R. aurantiaca, R. glutinis, R. minuta and R. mucilaginosa of the genus Rhodotorula, and S. salmonicolor and S. shibatanus of the genus Sporobolomyces. Only R. glutinis and R. mucilaginosa were isolated from sediments. All of the others were isolated from animal sources. Phylogenetic analyses based on internal transcribed spacer (ITS) regions and 5.8S rRNA gene sequences allowed us to establish the precise taxonomic placement of each of the isolates and thereby investigate the intraspecific relationships among the isolates. Twenty-two strains identified as members of R. glutinis, which showed a wide distribution in the deep-sea, and five isolates identified as R. minuta, which were isolated only from benthic animals, showed substantial heterogeneity within the species. The isolates phenotypically identified as Sporobolomyces species and R. mucilaginosa phylogenetically occupied the placements corresponding to these species. Some strains assigned to known species on the basis of phenotypic features should be regarded as new species as suggested by the results of molecular analysis.     

Prevalence of Eimeria spp. (Apicomplexa: Eimeriidae) in Oregon Llamas1

Eimeria alpacae, E. punoensis, E. lamae, and E. macusaniensis were identified in fecal samples from 189 llama (Lama glama (L.)) adults and 50 llama crias (animals less than one year of age of any species in the genus Lama) from central and western Oregon. In both adults and crias, E. alpacae was the most common species found. The least common was E. macusaniensis, which was found in only two adults. Overall prevalence and numbers of animals with mixed infections was approximately twice as high in crias as in adults.     

Emergence and dynamics of cyclopoid copepods in an unpredictable environment

SUMMARY. 1. We studied species composition, abundance and population dynamics of cyclopoid copepods emerging from dormancy from the sediments of a temporary pond in South Carolina in 1985, 1988 and 1989. During a drought in 1988–89, the maximum hydroperiod was 19 days; in 1985 and late 1989-early 1990, the hydroperiods were 57 and 118 days. We also report on species present in 1984 and 1987, two years that had longer hydroperiods, and on abundance of cyclopoids in 1984. 2. Within a day after standing water appeared, fourth-instar copepodids of Diacydops haueri and D. crassicaudis brachycercus became active. These two species appeared every time the pond filled in winter, spring, or autumn. Other species, including Acanthocyclops vernalis, were usually not collected until weeks or months after the pond filled. Because the times and durations of fillings were extremely variable, species composition differed among years, with the most species (eleven) appearing in 1984, the year with the longest hydroperiod. 3. The abundances of emerging Diacydops were much lower in 1988 and 1989 (range of means from seven fillings in spring and autumn: 675–7382 animals m^?2) than 1985 (range of means from three fillings in winter: 26,037–107,418 animals m^?2). Low abundances of emerging animals could have been caused by poor survival of dormant animals, poor production during preceding seasons, or incomplete emergence of the dormant populations. 4. Substrate samples from the dry pond were collected in spring, summer, and autumn 1988 and winter 1989 to measure emergence of the cyclopoids in laboratory incubations. Population densities of emerging animals were much lower in 1988 and 1989 (range of means from seven experiments: 0–120 animals m^?2 over the first 3 days) than in similar experiments in 1984 (Taylor & Mahoney, 1990, means from two experiments: 3630 and 6890 animals m^?2). 5. Despite the low abundance of animals emerging from dormancy in late 1989, the cyclopoid populations in 1990 reached similar densities of copepodids (10^4?-10⁵ animals m^?2) to those reached in 1984 and 1985. These results suggest that short generation time and high reproductive capacity permit rapid recovery from population reductions.     

Evidence for speciation underground in diving beetles (Dytiscidae) from a subterranean archipelago

Most subterranean animals are assumed to have evolved from surface ancestors following colonization of a cave system; however, very few studies have raised the possibility of “subterranean speciation” in underground habitats (i.e., obligate cave‐dwelling organisms [troglobionts] descended from troglobiotic ancestors). Numerous endemic subterranean diving beetle species from spatially discrete calcrete aquifers in Western Australia (stygobionts) have evolved independently from surface ancestors; however, several cases of sympatric sister species raise the possibility of subterranean speciation. We tested this hypothesis using vision (phototransduction) genes that are evolving under neutral processes in subterranean species and purifying selection in surface species. Using sequence data from 32 subterranean and five surface species in the genus Paroster (Dytiscidae), we identified deleterious mutations in long wavelength opsin (lwop), arrestin 1 (arr1), and arrestin 2 (arr2) shared by a sympatric sister‐species triplet, arr1 shared by a sympatric sister‐species pair, and lwop and arr2 shared among closely related species in adjacent calcrete aquifers. In all cases, a common ancestor possessed the function‐altering mutations, implying they were already adapted to aphotic environments. Our study represents one of the first confirmed cases of subterranean speciation in cave insects. The assessment of genes undergoing pseudogenization provides a novel way of testing modes of speciation and the history of diversification in blind cave animals.     

Impact of predation by domestic cats Felis catus in an urban area

• 1 As companion animals, domestic cats Felis catus can attain very high densities, and have the potential to exert detrimental effects on prey species. Yet, there is a paucity of information on the impact of cat predation in urban areas, where most cats are likely to be present.
• 2 We quantified the minimum number of animals killed annually by cats in a 4.2-km² area of Bristol, UK, by asking owners to record prey animals returned home by their pets. The potential impact of cat predation on prey species was estimated by comparing the number of animals killed with published estimates of prey density and annual productivity.
• 3 Predator density was 229 cats/km².
• 4 Five mammal, 10 bird and one amphibian prey species were recorded. Mean predation rate was 21 prey/cat/annum. The most commonly recorded prey species was the wood mouse Apodemus sylvaticus.
• 5 Predation on birds was greatest in spring and summer, and probably reflected the killing of juvenile individuals. For three prey species (house sparrow Passer domesticus, dunnock Prunella modularis, robin Erithacus rubecula), estimated predation rates were high relative to annual productivity, such that predation by cats may have created a dispersal sink for juveniles from more productive neighbouring areas. The impact of cats on these species therefore warrants further investigation.

     

付疃河流域中下游大型底栖动物群落结构与水质生物学评价

2018年12月-2019年10月对山东省日照市付疃河流域中下游大型底栖动物及相应水环境因子进行分季节的监测,并对底栖动物群落组成、多样性特征及与水质因子的相关性进行分析。结果表明,调查共采集底栖动物42种（环节动物14种、节肢动物20种、软体动物8种）,广泛分布物种为霍甫水丝蚓（Limnodrilus hoffmeisteri）、水丝蚓属（Limnodrilus sp.）及摇蚊属（Chironomus sp.）;底栖动物总密度呈春季 > 冬季 > 秋季 > 夏季;CCA （Canonical Correspondence Analysis）分析表明环节动物与COD、TP有显著正相关性,各门类与NH₃-N相关性差异较大;底栖动物多样性分布特征与河流水源结构有关。采用生物多样性指标、指示物种水质生物学指标进行水质评价,Shannon-Wiener指数、Margalef指数评级偏差,Pielou指数评级偏优,而指示物种水质生物学评价（Goodnight-Whitley指数、相对重要性指数及Wright指数）基本一致,整体平均处于中污染,评价过程仍须考虑河流及物种客观属性特征,得到更具适用性的评价管理方法。     

A comparative study of the dispersal of 10 species of stream invertebrates

1. Apart from downstream dispersal through invertebrate drift, few quantitative data are available to model the dispersal of stream invertebrates, i.e. the outward spreading of animals from their point of origin or release. The present study provides comparative data for 10 species, using two independent methods: unmarked animals in six stream channels built over a stony stream and marked animals in the natural stream. Experiments were performed in April and June 1973 and 1974, with initial numbers of each species varying from 20 to 80 in the stream channels and 20 to 60 for marked animals. 2. Results were the same for marked invertebrates and those in the channels. Dispersal was not density‐dependent; the number of dispersing animals was a constant proportion of the initial number for each species. The relationship between upstream or downstream dispersal distance and the number of animals travelling that distance was well described by an inverse power function for all species (exponential and log models were poorer fits). Results varied between species but were similar within species for the 4 months, and therefore were unaffected by variations in mean water velocity (range 0.04–0.35 m s^?1) or water temperature (range 6.7–8.9 °C in April, 12.1–14.8 °C in June). 3. Species were arranged in order, according to their dispersal abilities. Three carnivores (Perlodes, Rhyacophila, Isoperla) dispersed most rapidly (70–91% in 24 h, maximum distances 9.5–13.5 m per day), followed by two species (Protonemura, Rhithrogena) in which about half their initial numbers dispersed (50–51% in 24 h, 7.5–8 m per day), and four species (Ecdyonurus, Hydropsyche, Gammarus, Baetis) in which less than half dispersed (33–40% in 24 h, 5.5–7 m per day). Dispersal was predominantly upstream for all nine species. Few larvae (20%) of Potamophylax dispersed, with similar maximum upstream and downstream distances of 3.5 m per day. The mean time spent drifting downstream was known for seven species from previous studies, and correlated positively with their dispersal distances. Therefore, the species formed a continuum from rapid to very slow dispersers. These interspecific differences should be considered when evaluating the role of dispersal in the maintenance of genetic diversity in stream invertebrates, and in their ability to colonise or re‐colonise habitats.     

Diversity,ecology, and seasonality of hard ticks (Acari: Ixodidae) in eastern Croatia

The diversity of hard tick fauna was studied in different forest communities in 48 localities of eastern Croatia using the dragging‐flagging method and by hand from ten different vertebrate hosts. A total of 2,225 specimens comprising seven species in three genera were identified. Ixodes ricinus, the most abundant species (72.8% of all collected specimens) was recorded in 44 localities, followed by Dermacentor reticulatus in 19 localities, while the other five species (D. marginatus, H. concinna, H. inermis, I. canisuga, and I. hexagonus) were recorded in fewer localities. The highest ratio (67% of collected ticks) was in the adult stage with the predominance of females. The numbers of collected females, males, and nymphs of I. ricinus and H. concinna differed significantly. Ten new tick‐host associations in Croatia were recorded. Fifty‐three animals were infested with one tick species. Single species infestation with I. ricinus was found in 45.8% of animals, followed by D. reticulatus with 25.4%, D. marginatus with 10.2%, H. inermis and I. hexagonus with 3.4%, and I. canisuga with 1.7%. Coinfestation with two species of ticks were recorded in six animals. Ixodes ricinus, H. inermis, and D. reticulatus showed bimodal seasonal activity; for other species unimodal activity patterns were recorded.     

Atkinsiella dubia and its related species

Atkinsiella dubia, isolated from the mantle of abalone (Haliotis sieboldii), is described and illustrated as a new record from Japan. The fungus was also obtained from the gills of swimming crab (Portunus trituberculatus). Six other species of the genusAtkinsiella have hitherto been reported from various aquatic animals. The fungus is distinguished from the other six species by the morphology of its mycelia and the process of zoospore production. The most distinctive feature is that zoospores in the first motile stage ofA. dubia encyst in zoosporangia, unlike the other species. We therefore proposeHalocrusticida gen. nov. (Lagenidiales, Haliphthoraceae) for the other six species ofAtkinsiella. A key to species of the genusHalocrusticida is provided.     

Ty1-copia group retrotransposon sequences in amphibia and reptilia

We have isolated sequences belonging to Tyl-copia group retrotransposons from the genomes of an amphibian (Pyxicephalus adspersa) and three reptiles (Conolophus subscristatus, Amblyrynchus cristatus and Pytas mucosus). Two different seqences were found in the amphibian (Tpa1 and Tpa2). Each is present in several copies per genome and absent from the genomes of two other amphibian species. The C. subcristatus sequence Tcs1 is present in multiple copies in both its host genome (Galapagos land iguana) and the genome of the related Galapagos marine iguana (A. cristatus). There is little or no polymorphism in Tcs1 insertions between different individual animals, suggesting that this sequence is not transposing rapidly in either iguana genome. The P. mucosus sequence Tpm1 shows a discontinuous distribution in snake species, suggesting that it has either been lost from many lineages during vertical germline transmission or has been transferred horizontally in some snake species. Phylogenetic comparisons of all these sequences with each other and with other members of this retrotransposon group from other animals and plants show that sequences within a particular vertebrate species are most closely related to each other, consistent with a vertical transmission model for their evolution.     

<Emphasis Type="Italic">Anaplasma phagocytophilum</Emphasis> infection in a multi-species deer community in the New Forest,England

The tick-transmitted Anaplasma phagocytophilum has been recorded in a range of mammal species and causes granulocytic ehrlichiosis in humans, horses, and companion animals as well as tick-borne fever in ruminants. Although deer and other ruminant species are known to be natural hosts, the distribution among sympatric deer populations is unexplored. Blood from 80 deer of four species were screened using an A. phagocytophilum-specific real-time polymerase chain reaction. Overall, 29% (19–40) of deer tested positive. Fallow deer (Dama dama), the most numerous species, had significantly lower prevalence (21%) than roe (Capreolus capreolus), red (Cervus elaphus), or sika (Cervus nippon) deer (average 50%). It is suggested that patterns of habitat use influence infection levels in different deer species. The role of deer as reservoirs of anaplasmosis remains unknown; however, prevalence in deer could be a useful index of local infection pressure and the risk of disease in domestic animals and humans.     

STOMACH CONTENTS OF FALSE KILLER WHALES (PSEUDORCA CRASSIDENS) STRANDED ON THE COASTS OF THE STRAIT OF MAGELLAN,TIERRA DEL FUEGO

We examined the stomachs of 25 false killer whales collected from a mass stranding of 181 animals along both coasts of the Strait of Magellan, Chile, in March 1989. The 21 stomachs (nine males and 12 females), with food remains contained 11 prey species (nine cephalopods and two fishes) with a total of 442 individuals. Except for one case, food remains were meager, indicating that the animals had not eaten for some time or through stress had vomited on the beach. Eleven of the 21 animals had mud (often with squid beaks) in the esophagus and first stomach. The prey were identified employing squid beaks, fish otoliths and bones, and their wet weights were estimated using regressions between hard parts and known weights of species. The most important prey were the oceanic and neritic-oceanic squids, Martialia byadesi and Illex argentinus, followed by the neritic fish, Macruronus magellanicus. Of less importance were the oceanic squid, Todaroes fillipovae, the oceanic and epipelagic octopus, Ocytboe sp., and the oceanic squid, Moroteuthis ingens. The rest of the prey were poorly represented and included four oceanic squids and one neritic fish. The prey species of these animals were subantarctic, with two antarctic species, abundant over the Patagonian shelf and adjacent oceanic waters around Tierra del Fuego.     

Comparative ecology of Gammarus pulex (L.) and Asellus aquaticus (L.) II: fungal preferences

This paper continues to explore niche differentiation in Gammarus pulex and Asellus aquaticus by analysis of their food preferences. Individuals from both species discriminated between leaf discs colonized by different fungal species and exhibited strong preferences for Anguillospora longissima and Heliscus lugdunensis. Fungal preferences were not correlated with the relative abundance of fungi in the field and there was considerable intra-population variability in food preferences — both between individuals and for the same individual through time. Niche overlap between animals from all four study populations was high and there was no evidence of differences in the potential trophic niches of animals from sympatric and allopatric populations.     

Ticks species (Ixodida) in the Summit Municipal Park and adjacent areas,Panama City,Panama

From September 2007 to September 2009, we studied the species of ticks present in the Summit Municipal Park. Ticks were extracted from zoo animals, free-living wild mammals and reptiles trapped, dead mammals on the roads and environment (ground and zoo burrows). A total of 2,649 ticks were collected: 2,167 immature stages (1,345 larvae and 822 nymphs) and 482 adults. Seventeen species were identified: Ornithodoros puertorricensis (Argasidae), Amblyomma auricularium, A. cajennense, A. calcaratum, A. dissimile, A. geayi, A. naponense, A. nodosum, A. oblongoguttatum, A. ovale, A. pecarium, A. sabanerae, A. tapirellum, A. varium, Ixodes luciae, Haemaphysalis juxtakochi and Rhipicephalus sanguineus (Ixodidae), representing 36% of the species reported in Panama. Amblyomma ovale was the species most commonly infesting animals from the zoo.     

Variation of the Locomotor Activity Rhythms in Three Species of Talitrid Amphipods,Talitrus saltator,Orchestia montagui,and O. gammarellus,from Various Habitats

The expression of biological rhythms was investigated in five populations of three different species of talitrid amphipods from various habitats in the Maremma Regional Park, Grosseto, Italy: Talitrus saltator (from a sandy beach and a canal), Orchestia montagui (form a Posidonia banquette), and O. gammarellus (from a cave entrance and a river bank). Locomotor activity rhythms were recorded in individual animals over 21 days in constant dark at a temperature of 18°±1°C. A high variability in rhythm expression was evident, not only among species and populations but also within populations and the activity pattern of individuals. Activity rhythms of T. saltator and O. montagui were similar, with a good definition and precise circadian periodicity, whereas O. gammarellus showed a high variability and low definition of the circadian rhythm. Significant differences were also observed between two populations of O. gammarellus and T. saltator from different habitats. Within the O. gammarellus species, a significantly higher percentage of active animals (p<0.001) was observed in the cave than the river‐bank population; within T. saltator, a significantly lower percentage of active animals (p<0.01) and higher percentage of periodic animals (p<0.05) was found in the canal than the sandy beach population. With reference to environmental stability and variability, the differences observed are explained as a need for plasticity to adapt to environmental changes.     

Occurrence and Population Size of <Emphasis Type="Italic">Malassezia</Emphasis> spp. in the External Ear Canal of Dogs and Cats Both Healthy and with Otitis

Malassezia yeasts are commensal organisms of human and animal skin that occasionally act as pathogens; lipid-dependent species are associated with human skin disorders. The aim of this work was to evaluate the occurrence, risk factors and population size of different species of Malassezia in the external ear canal of dogs and cats with and without otitis externa. Between 2001 and 2003, 107 healthy animals (25 cats and 82 dogs) and 123 animals with chronic otitis exteirna (48 cats and 75 dogs) were clinically examined. Sterile cotton swabs were used to collect specimens from the external ear canal and culture tests and cytological examinations were performed to detect the presence and population size of Malassezia yeasts. Malassezia yeasts were isolated from 72.9% and 40% of the cats and from 57.3% and 28.0% of the dogs, with and without otitis externa, respectively. Malassezia was frequently isolated from animals under 5 years of age. The highest prevalence of positive samples was reported in winter for cats and in autumn for dogs. Dogs with pendulous ears showed a higher incidence of infection than dogs with erect ears. More Malassezia yeasts were recovered from animals with otitis (i.e. 59.6 colony forming units – CFUs – for cats and 66.0 CFUs for dogs) than healthy animals. Out of the 413 isolates obtained from animals with and without otitis, 403 (97.6%) were identified as M. pachydermatis and 10 (2.4%) as M. globosa. A statistical evaluation of the occurrence of Malassezia yeasts in dogs and cats revealed that predisposing factors for Malassezia infections are sampling period for cats, and type of ear for dogs. The largest population of Malassezia yeasts was detected in animals with otitis, suggesting a role in the occurrence of lesions.     

Association of anurans with pathogenic fungi

In a study of 450 Amazonian anurans, we isolated yeasts and yeast-like fungi from 54 animals (Bufo granulosus, B. marinus, Dendrophrynyscus sp., Hyla geographica, H. lanciformes, Ololygon rubra, Adenomera hylaedactyla, Eleutherodactylus fenestratus, Leptodactylus fuscus, L. ocellatus, L. pentadactylus). The internal organs of these animals did not show any macroscopic anomaly nor histopathology. We recovered 105 fungal isolates from the anuran liver, lung, kidney, spleen, heart and gonad. The isolates were made up of 30 fungal species, 9 of which (48 isolates, 46%) were fungi with known pathogenic potentials, namely: Candida guilliermondii, C. parapsilosis, C. tropicalis, C. glabrata, Geotrichum candidum, Aureobasidium pullulans, Wangiella dermatitidis, Trichosporon cutaneum and Exophiala werneckii. Eleven animals harbored identical fungi in more than one of their internal organs; seven animals had more than one fungal species colonizing a single organ. Our findings indicated probable natural subclinical infections of candidiasis, geotrichosis or phaeohyphomycosis, and also symbiotic presence of non-pathogenic fungi among neotropical anurans.     

Dietary composition of wildebeest (Connochaetes taurinus) kongoni (Alcephalus buselaphus) and cattle (Bos indicus), grazing on a common ranch in south-central Kenya

This paper gives the results of a study conducted at Game Ranching Ltd, situated at the Athi Kapiti Plains, Kenya, to determine the dietary composition of cattle (Bos indicus L), kongoni (Alcephalus buselaphus Pallas) and wildebeest (Connochaetes taurinus Burchell), through two forage growing seasons (wet and dry). The dietary preferences and overlaps between the species were also determined. The diet preference of the three herbivores was determined using a microhistological analysis technique. The three dominant grasses in the ranch: Themeda triandra Fork, Digitaria macroblephara (Hack.) Stapf and Penisetum mezianum Leeke, formed the major diets of the animals. The browse component of the diets increased during the dry season by about 100% for all the animal species, with cattle always having twice as much browse as the wild herbivores. However, the animals selected similar diets in terms of plant species during both seasons but were more selective during the wet season. Dietary overlaps were always above 75%, but more than this during the dry season. The dietary overlaps were lower between cattle and wild herbivores than between the wild herbivores. The diet preference index for the animals differed from season to season, and from plant to plant.     

<Emphasis Type="Italic">Campylobacter</Emphasis> spp., <Emphasis Type="Italic">Salmonella</Emphasis> spp., Verocytotoxic <Emphasis Type="Italic">Escherichia coli</Emphasis>, and Antibiotic Resistance in Indicator Organisms in Wild Cervids

Faecal samples were collected, as part of the National Health Surveillance Program for Cervids (HOP) in Norway, from wild red deer, roe deer, moose and reindeer during ordinary hunting seasons from 2001 to 2003. Samples from a total of 618 animals were examined for verocytotoxic E. coli (VTEC); 611 animals for Salmonella and 324 animals for Campylobacter. A total of 50 samples were cultivated from each cervid species in order to isolate the indicator bacterial species E. coli and Enterococcus faecalis/E. faecium for antibiotic resistance pattern studies. Salmonella and the potentially human pathogenic verocytotoxic E. coli were not isolated, while Campylobacter jejuni jejuni was found in one roe deer sample only. Antibiotic resistance was found in 13 (7.3%) of the 179 E. coli isolates tested, eight of these being resistant against one type of antibiotic only. The proportion of resistant E. coli isolates was higher in wild reindeer (24%) than in the other cervids (2.2%). E. faecalis or E. faecium were isolated from 19 of the samples, none of these being reindeer. All the strains isolated were resistant against one (84%) or more (16%) antibiotics. A total of 14 E. faecalis -strains were resistant to virginiamycin only. The results indicate that the cervid species studied do not constitute an important infectious reservoir for either the human pathogens or the antibiotic resistant microorganisms included in the study.