Non-biting midges in biodiversity conservation and environmental assessment: Findings from boreal freshwater ecosystems

Non-biting midges (Diptera: Chironomidae) are frequently overlooked in freshwater biodiversity surveys and environmental assessment, yet they are commonly the most abundant and the most diverse taxon in freshwater ecosystems. We reviewed the diversity patterns and assemblage–environment relationships of non-dipterans and chironomids mainly in boreal freshwater ecosystems building on previously reported findings. Although generally the same environmental gradients are correlated with assemblage structure, their relative importance varies between chironomids and non-dipterans. Chironomid assemblage response to and recovery from human impacts are also likely to differ from that of other common benthic taxa. Thus, environmental assessments may be biased if chironomids are not included. Different surrogacy approaches have thus far shown little success in accounting for chironomid species richness and assemblage structure, and there appears to be no easy short-cut for the examination of chironomids as part of freshwater surveys. However, we show that genus-level identification of pupal exuviae provides a reliable and rapid way of estimating chironomid species richness at least in boreal freshwater ecosystems. In addition, we demonstrate that the inclusion of chironomids may increase the signal-to-noise ratio in bioassessment data sets, and that this information can be obtained with modest increases in costs.     

Bryozoans are returning home: recolonization of freshwater ecosystems inferred from phylogenetic relationships

Bryozoans are aquatic invertebrates that inhabit all types of aquatic ecosystems. They are small animals that form large colonies by asexual budding. Colonies can reach the size of several tens of centimeters, while individual units within a colony are the size of a few millimeters. Each individual within a colony works as a separate zooid and is genetically identical to each other individual within the same colony. Most freshwater species of bryozoans belong to the Phylactolaemata class, while several species that tolerate brackish water belong to the Gymnolaemata class. Tissue samples for this study were collected in the rivers of Adriatic and Danube basin and in the wetland areas in the continental part of Croatia (Europe). Freshwater and brackish taxons of bryozoans were genetically analyzed for the purpose of creating phylogenetic relationships between freshwater and brackish taxons of the Phylactolaemata and Gymnolaemata classes and determining the role of brackish species in colonizing freshwater and marine ecosystems. Phylogenetic relationships inferred on the genes for 18S rRNA, 28S rRNA, COI, and ITS2 region confirmed Phylactolaemata bryozoans as radix bryozoan group. Phylogenetic analysis proved Phylactolaemata bryozoan's close relations with taxons from Phoronida phylum as well as the separation of the Lophopodidae family from other families within the Plumatellida genus. Comparative analysis of existing knowledge about the phylogeny of bryozoans and the expansion of known evolutionary hypotheses is proposed with the model of settlement of marine and freshwater ecosystems by the bryozoans group during their evolutionary past. In this case study, brackish bryozoan taxons represent a link for this ecological phylogenetic hypothesis. Comparison of brackish bryozoan species Lophopus crystallinus and Conopeum seurati confirmed a dual colonization of freshwater ecosystems throughout evolution of this group of animals.     

The resilience and functional role of moss in boreal and arctic ecosystems

CONTENTS: Summary 49 I. Mosses in the northern, high-latitude region 50 II. The role of moss in ecological resilience 51 III. Response of moss to disturbance 54 IV. Future research needs 60 V. Conclusions 62 Acknowledgements 62 References 62 SUMMARY: Mosses in northern ecosystems are ubiquitous components of plant communities, and strongly influence nutrient, carbon and water cycling. We use literature review, synthesis and model simulations to explore the role of mosses in ecological stability and resilience. Moss community responses to disturbance showed all possible responses (increases, decreases, no change) within most disturbance categories. Simulations from two process-based models suggest that northern ecosystems would need to experience extreme perturbation before mosses were eliminated. But simulations with two other models suggest that loss of moss will reduce soil carbon accumulation primarily by influencing decomposition rates and soil nitrogen availability. It seems clear that mosses need to be incorporated into models as one or more plant functional types, but more empirical work is needed to determine how to best aggregate species. We highlight several issues that have not been adequately explored in moss communities, such as functional redundancy and singularity, relationships between response and effect traits, and parameter vs conceptual uncertainty in models. Mosses play an important role in several ecosystem processes that play out over centuries - permafrost formation and thaw, peat accumulation, development of microtopography - and there is a need for studies that increase our understanding of slow, long-term dynamical processes.     

The functional role of burrowing bivalves in freshwater ecosystems

1. Freshwater systems are losing biodiversity at a rapid rate, yet we know little about the functional role of most of this biodiversity. The ecosystem roles of freshwater burrowing bivalves have been particularly understudied. Here we summarize what is known about the functional role of burrowing bivalves in the orders Unionoida and Veneroida in lakes and streams globally. 2. Bivalves filter phytoplankton, bacteria and particulate organic matter from the water column. Corbicula and sphaeriids also remove organic matter from the sediment by deposit feeding, as may some unionids. Filtration rate varies with bivalve species and size, temperature, particle size and concentration, and flow regime. 3. Bivalves affect nutrient dynamics in freshwater systems, through excretion as well as biodeposition of faeces and pseudofaeces. Excretion rates are both size and species dependent, are influenced by reproductive stage, and vary greatly with temperature and food availability. 4. Bioturbation of sediments through bivalve movements increases sediment water and oxygen content and releases nutrients from the sediment to the water column. The physical presence of bivalve shells creates habitat for epiphytic and epizoic organisms, and stabilizes sediment and provides refugia for benthic fauna. Biodeposition of faeces and pseudofaeces can alter the composition of benthic communities. 5. There is conflicting evidence concerning the role of resource limitation in structuring bivalve communities. Control by bivalves of primary production is most likely when their biomass is large relative to the water volume and where hydrologic residence time is long. Future studies should consider exactly what bivalves feed upon, whether feeding varies seasonally and with habitat, and whether significant overlap in diet occurs. In particular, we need a clearer picture of the importance of suspension versus deposit feeding and the potential advantages and tradeoffs between these two feeding modes. 6. In North America, native burrowing bivalves (Unionidae) are declining at a catastrophic rate. This significant loss of benthic biomass, coupled with the invasion of an exotic burrowing bivalve (Corbicula), may result in large alterations of ecosystem processes and functions.     

Assessing acid stress in Swedish boreal and alpine streams using benthic macroinvertebrates

Sixty streams in northern Sweden were sampled for benthic macroinvertebrates in spring and autumn of 2000 as part of the European Union project AQEM (the Development and Testing of an Integrated Assessment System for the Ecological Quality of Streams and Rivers throughout Europe using Benthic Macroinvertebrates). Samples were taken using a harmonised multi-habitat sampling procedure and a large number of parameters describing the streams and their catchments were recorded for all sampling sites. From the stream water chemistry characteristics unbiased measures of acid stress were derived, based on the Swedish Ecological Quality Criteria (EQC) for acidity status. These criteria do not, however, assess the degree of human influence to a stream. Therefore, in the following analysis of classification, the Swedish EQC status criteria are applied as if they were a measure of human influence. Three new multimetric acid indices using benthic macroinvertebrates were developed for the AQEM project. These, together with a large number of other benthic macroinvertebrate indices including a number of indices aimed at detecting acid stress, were evaluated for their ability to detect acid stress, using both spring/early summer and autumn sampling. Surprisingly, the acid index that is in general use in northern Sweden worked well in spring/early summer, but because of a (probable) re-colonisation of more acid sensitive taxa, the index values changed from classifying streams as affected in spring/early summer to classify streams as non-affected by acid stress in autumn. Another Swedish acid index (included in the Swedish Environmental Quality Criteria developed by the Swedish EPA) and developed for southern Sweden was strongly correlated between spring/early summer and autumn and could thus be sampled in the autumn and indicate acid stress from spring flood declines in pH. This is of great importance since the local County boards of northern Sweden generally argue that sampling has to be done in the spring to see the effects of acid stress, when sampling is difficult for logistic reasons. Whether or not the three indices developed for the AQEM project (and extensively based on the south Swedish acid index) were truly better than the south-Swedish acid index to assess acid stress in northern Sweden could not be clearly determined in the present study.     

Consumer‐driven nutrient dynamics in freshwater ecosystems: from individuals to ecosystems

The role of animals in modulating nutrient cycling [hereafter, consumer‐driven nutrient dynamics (CND)] has been accepted as an important influence on both community structure and ecosystem function in aquatic systems. Yet there is great variability in the influence of CND across species and ecosystems, and the causes of this variation are not well understood. Here, we review and synthesize the mechanisms behind CND in fresh waters. We reviewed 131 articles on CND published between 1973 and 1 June 2015. The rate of new publications in CND has increased from 1.4 papers per year during 1973–2002 to 7.3 per year during 2003–2015. The majority of investigations are in North America with many concentrating on fish. More recent studies have focused on animal‐mediated nutrient excretion rates relative to nutrient demand and indirect impacts (e.g. decomposition). We identified several mechanisms that influence CND across levels of biological organization. Factors affecting the stoichiometric plasticity of consumers, including body size, feeding history and ontogeny, play an important role in determining the impact of individual consumers on nutrient dynamics and underlie the stoichiometry of CND across time and space. The abiotic characteristics of an ecosystem affect the net impact of consumers on ecosystem processes by influencing consumer metabolic processes (e.g. consumption and excretion/egestion rates), non‐CND supply of nutrients and ecosystem nutrient demand. Furthermore, the transformation and transport of elements by populations and communities of consumers also influences the flow of energy and nutrients across ecosystem boundaries. This review highlights that shifts in community composition or biomass of consumers and eco‐evolutionary underpinnings can have strong effects on the functional role of consumers in ecosystem processes, yet these are relatively unexplored aspects of CND. Future research should evaluate the value of using species traits and abiotic conditions to predict and understand the effects of consumers on ecosystem‐level nutrient dynamics across temporal and spatial scales. Moreover, new work in CND should strive to integrate knowledge from disparate fields of ecology and environmental science, such as physiology and ecosystem ecology, to develop a comprehensive and mechanistic understanding of the functional role of consumers. Comparative and experimental studies that develop testable hypotheses to challenge the current assumptions of CND, including consumer stoichiometric homeostasis, are needed to assess the significance of CND among species and across freshwater ecosystems.     

Molecular data suggest that microsporidian parasites in freshwater snails are diverse

Microsporidian parasites infect almost all invertebrate and vertebrate hosts and have significant effects on individual and population fitness. Phylogenetic analysis demonstrates that the phylum is highly divergent and that some lineages show strong associations with host taxa. We here examine the diversity and distribution of parasites in gastropod molluscs to test for host-parasite co-association. 16 populations representing 10 species of freshwater snails were screened using microsporidian specific small subunit rDNA primers. Four novel microsporidian parasite sequences were detected within populations of three host species from the genera Bulinus, Biomphalaria and Planorbis. Prevalence ranged from 5 to 84%. Phylogenetic analysis of these novel sequences reveals that they group together as a paraphyletic assemblage in the microsporidian tree basal to the two lineages containing the genera Encephalitozoon and Nosema. Preliminary observation of one microsporidian infection, show parasites distributed in all tissue systems of Bulinus globosus. However, infection is most prevalent in the digestive gland while also in the egg sacs, suggesting that the microsporidium is using a mixed strategy of horizontal and vertical transmission in this population.     

Naturally occurring monoepoxides of eicosapentaenoic acid and docosahexaenoic acid are bioactive antihyperalgesic lipids

Beneficial physiological effects of long-chain n-3 polyunsaturated fatty acids are widely accepted but the mechanism(s) by which these fatty acids act remains unclear. Herein, we report the presence, distribution, and regulation of the levels of n-3 epoxy-fatty acids by soluble epoxide hydrolase (sEH) and a direct antinociceptive role of n-3 epoxy-fatty acids, specifically those originating from docosahexaenoic acid (DHA). The monoepoxides of the C18:1 to C22:6 fatty acids in both the n-6 and n-3 series were prepared and the individual regioisomers purified. The kinetic constants of the hydrolysis of the pure regioisomers by sEH were measured. Surprisingly, the best substrates are the mid-chain DHA epoxides. We also demonstrate that the DHA epoxides are present in considerable amounts in the rat central nervous system. Furthermore, using an animal model of pain associated with inflammation, we show that DHA epoxides, but neither the parent fatty acid nor the corresponding diols, selectively modulate nociceptive pathophysiology. Our findings support an important function of epoxy-fatty acids in the n-3 series in modulating nociceptive signaling. Consequently, the DHA and eicosapentaenoic acid epoxides may be responsible for some of the beneficial effects associated with dietary n-3 fatty acid intake.     

Archaea in boreal Swedish lakes are diverse,dominated by Woesearchaeota and follow deterministic community assembly

Despite their key role in biogeochemical processes, particularly the methane cycle, archaea are widely underrepresented in molecular surveys because of their lower abundance compared with bacteria and eukaryotes. Here, we use parallel high-resolution small subunit rRNA gene sequencing to explore archaeal diversity in 109 Swedish lakes and correlate archaeal community assembly mechanisms to large-scale latitudinal, climatic (nemoral to arctic) and nutrient (oligotrophic to eutrophic) gradients. Sequencing with universal primers showed the contribution of archaea was on average 0.8% but increased up to 1.5% of the three domains in forest lakes. Archaea-specific sequencing revealed that freshwater archaeal diversity could be partly explained by lake variables associated with nutrient status. Combined with deterministic co-occurrence patterns this finding suggests that ecological drift is overridden by environmental sorting, as well as other deterministic processes such as biogeographic and evolutionary history, leading to lake-specific archaeal biodiversity. Acetoclastic, hydrogenotrophic and methylotrophic methanogens as well as ammonia-oxidizing archaea were frequently detected across the lakes. Archaea-specific sequencing also revealed representatives of Woesearchaeota and other phyla of the DPANN superphylum. This study adds to our understanding of the ecological range of key archaea in freshwaters and links these taxa to hypotheses about processes governing biogeochemical cycles in lakes.     

Gradient-dominated ecosystems: sources and regulatory functions of dissolved organic matter in freshwater ecosystems

The emergent wetland and littoral components of the land-water zone are functionally coupled by the amounts and types of dissolved organic matter that are released, processed, transported to, and then further processed within the recipient waters. Operational couplings and integrations in freshwater ecosystems occur along physical and metabolic gradients of a number of scales from micrometer to kilometer dimensions. The operation and turnover of the microbial communities, largely associated with surfaces, generate the metabolic foundations for material fluxes along larger-scale gradients. Because of the predominance of small, shallow freshwater bodies, most dissolved organic carbon (DOC) of lacustrine and riverine ecosystems is derived from photosynthesis of higher plants and microflora associated with detritus, including sediments, and is only augmented by photosynthesis of phytoplankton. As the dissolved organic compounds generated in the wetland and littoral interface regions move toward the open-water regions of the ecosystems, partial utilization effects a selective increase in organic recalcitrance. Even though DOC from allochthonous and from interface sources is more recalcitrant than that produced by planktonic microflora, decomposition of the much larger interface quantities imported to the pelagic zone dominates ecosystem decomposition. The observed high sustained productivity of the land-water interface zone results from extensive recycling of essential resources (nutrients, inorganic carbon) and conservation mechanisms. On the average in lakes and streams, greater than 90 percent of the decomposition in the ecosystem is by bacteria utilizing DOM from non-pelagic sources of primary productivity. In addition to direct mineralization of DOC from non-pelagic sources, many of the organic compounds function indirectly to influence metabolism. New evidence is presented to demonstrate formation of complexes between humic and fulvic organic acids and extracellular enzymes. These complexes inhibit enzyme activity and can be transported within the ecosystem. The complex can be decoupled by mild ultraviolet photolysis with regeneration of enzyme activity in displaced locations.     

Context dependency and metacommunity structuring in boreal headwater streams

We studied the relative importance of spatial and environmental factors as determinants of algal, bryophyte, and macroinvertebrate metacommunities in two boreal drainage basins differing in spatial extent. We used eigenfunction spatial analysis to model the spatial relationships among sites and distance‐based redundancy analysis to partition the variability in biotic communities between the spatial filters generated through spatial eigenfunction analysis and the environmental factors measured in the field. In the smaller study area, each metacommunity was structured mostly by environmental factors. This was evidenced by the fact that either the pure environmental effect was significant or environmental factors were strongly spatially structured. In the larger study area, only pure environmental effects were significant. These findings suggest that the environmental control prevails in boreal headwater streams. However, our findings also suggest that the specific details of the community‐environment and community–space relationships are dependent on the focal organism group and drainage basin.     

淡水水生生态系统温室气体排放的主要途径及影响因素研究进展

淡水水生生态系统是全球陆域生态系统的重要组成部分,近年来,关于淡水水生生态系统温室气体排放的研究日益增多。基于国内外目前对湖泊、河流、水库及浅水池塘等淡水生态系统开展的最新研究成果,总结分析了淡水水生生态系统温室气体排放的3个主要途径及相应观测方法。气泡排放的观测方法有倒置漏斗法、开放式动态箱法和超声探测技术;植物传输的观测方法有密闭箱法和植株切割法;扩散途径的观测方法有静态浮箱法、模型估算法/梯度法、微气象学法、TDLAS吸收光谱法等。从物理因素、化学因素、生物因素、水动力因素和人类活动等角度,深入探讨了淡水水生生态系统温室气体排放通量的影响因素。最后根据当前研究中存在的不足,对今后的研究方向提出了建议,以期为我国进一步深入开展相关研究提供借鉴。     

Ectoparasites are more vulnerable to host extinction than co-occurring endoparasites: evidence from metazoan parasites of freshwater and marine fishes

Hydrobiologia - The extinction of fish species can direct and indirectly affect many groups of associated species, among which parasite communities can be the most susceptible. However, the...