The molecular architecture of extracellular hemoglobin of Eophila tellinii

The molecular shape of the extracellular hemoglobin of the annelid worm Eophila tellinii was investigated by electron microscopy of negatively stained single molecules and of two-dimensional crystalline arrays. While the single molecules show the characteristic double hexagons, approx 28 nm in diameter and 19 nm in height, the molecules in the crystals are only 7–8 nm in height according to the 3D reconstruction. This is attributed to a dissociation of the hemoglobin complex; we present evidence that dissociation may proceed to the level of the main subunit from which half-molecules are reassembled. 3D reconstructions of two different crystal forms yield almost identical results and provide some information about the mass distribution within the main subunit. The presence or absence of the “central subunit” is tentatively interpreted in terms of a gross conformational change which entails a redistribution of mass also in the main subunit.     

Subfamily Limoniinae Speiser, 1909 (Diptera,Limoniidae) from Baltic Amber (Eocene): The Genus Elephantomyia Osten Sacken, 1860

A revision of the genus Elephantomyia Osten Sacken (Diptera: Limoniidae) from Baltic amber (Eocene) is presented. Four species—E. baltica Alexander, E. brevipalpa Loew, E. longirostris Loew, and E. pulchella Loew—are redescribed and documented with photographs and drawings. In addition, two new species of the genus are described: Elephantomyia bozenae sp. nov., and Elephantomyia irinae sp. nov. All these fossil species are placed within the subgenus Elephantomyia. A key to the extinct species of Elephantomyia is provided, and the genus’ ecological pattern and evolutionary aspects are discussed.     

Lecithoceridae (Lepidoptera: Gelechioidea) of New Guinea,Part V: Descriptions of two new genera,Neotimyra gen. nov. and Strombiola gen. nov.

This is the 5th part in a series on the family Lecithoceridae (Lepidoptera, Gelechioidea) of New Guinea. Two new genera, Neotimyra gen. nov. and Strombiola gen. nov. are proposed. There are five new species in the genus Neotimyra (N. senara sp. nov., N. milleri sp. nov., N. gyriola sp. nov., N. warkapiensis sp. nov., and N. nemoralis sp. nov.), and one new species in the genus Strombiola (S. papuana sp. nov.). Adults, heads, labial palpi, venations, and male genitalia are illustrated.     

Host-parasite relations and seasonal occurrence of Paragordius tricuspidatus and Spinochordodes tellinii (Nematomorpha) in Southern France

Paragordius tricuspidatus (Dufour, 1828) and Spinochordodes tellinii (Camerano, 1888) are two sympatric species of horsehair worms in southern France. Paragordius tricuspidatus was found in only one host species, Nemobius sylvestris (Bosc, 1792), while Spinochordodes tellinii was found in nine different hosts belonging to Orthoptera Caelifera. Size of nematomorphs varied strongly, but is additionally influenced by host size (in Spinochordodes tellinii) or number of parasites per host (in Paragordius tricuspidatus). Both species have a clear seasonality with Paragordius tricuspidatus occurring from June to early August and Spinochordodes tellinii occurring in August and September.     

Xenophyophores (Rhizaria,Foraminifera), including four new species and two new genera,from the western Clarion-Clipperton Zone (abyssal equatorial Pacific)

The Clarion-Clipperton Zone (CCZ) occupies a vast swathe of the Pacific with extensive polymetallic nodule deposits. Eastern and central parts host diverse assemblages of xenophyophores (megafaunal agglutinated foraminifera). Here we describe xenophyophores obtained using a Remotely Operated Vehicle from the western CCZ. Eleven distinct forms include two known species, Stannophyllum zonarium Haeckel, 1888 and Aschemonella monile Gooday and Holzmann in Gooday et al., 2017b. Another four are described as new species based on morphological and genetic data. In Abyssalia foliformis gen. nov., sp. nov. and Abyssalia sphaerica sp. nov. the flattened or spherical test comprises a homogeneous framework of sponge spicules. Psammina tenuis sp. nov. has a delicate, thin, plate-like test. Moanammina semicircularis gen. nov., sp. nov. has a stalked, fan-shaped test and is genetically identical to ‘Galatheammina sp. 6’ of Gooday and co-workers from the eastern CCZ. Sequence data revealed a spherical ‘mudball’, which disintegrated and cannot be formally described, to be a novel xenophyophore. Finally, four morphospecies are represented by dead tests: Psammina spp., Reticulammina sp., and an unknown genus with a unique test structure. This collection enhances our knowledge of Pacific xenophyophore diversity and provides the first genetic confirmation of wide geographic ranges for abyssal species.     

Two new species of Chrysis Linnaeus (Hymenoptera,Chrysididae) from Iran

The Iranian species in the Chrysis pulchella and C. varidens species groups are investigated. Six species are recognized, two of which are described for the first time: Chrysis gamberoonensis Farhad, Rosa and Talebi sp. nov. and Chrysis brunneamarginata Farhad, Rosa and Talebi sp. nov.. Chrysis gamberoonensis Farhad, Rosa and Talebi sp. nov. belongs to the C. pulchella group and is recognizable within this species group by its unique blue body coloration, scattered mesosoma punctures, polished pit row with elongated pits, and a small median tooth on the lateral edge of metasomal tergum 3. Chrysis brunneamarginata Farhad, Rosa and Talebi sp. nov. belongs to the C. varidens group and is recognizable by the usually colorless apical rim of metasomal tergum 3, and the unique shape of the anterior corners of the scutellum which are enlarged, thickened and directed backward covering the axillary trough. Dichotomous keys and distributional data for Iranian species included in these species groups are provided. Chrysis schwarzi Linsenmaier, 1968 is raised to species rank. The number of Iranian Chrysis species and subspecies is raised to 122.www.zoobank.org/urn:lsid:zoobank.org:pub:F419F860-3B90-4679-9A19-2CF5C255AE6B     

Kocuria uropygioeca sp. nov. and Kocuria uropygialis sp. nov., isolated from the preen glands of Great Spotted Woodpeckers (Dendrocopos major)

Two new species of Gram-positive cocci were isolated from the uropygial glands of wild woodpeckers (Dendrocopos major) originating from different locations in Germany. A polyphasic approach confirmed the affiliation of the isolates to the genus Kocuria. Phylogenetic analysis based on the 16S rRNA gene showed high degree of similarity to Kocuria koreensis DSM 23367^T (99.0% for both isolates). However, low ANIb values of <80% unequivocally separated the new species from K. koreensis. This finding was further corroborated by DNA fingerprinting and analysis of polar lipid profiles. Furthermore, growth characteristics, biochemical tests, MALDI-TOF MS analysis, and G + C contents clearly differentiated the isolates from their known relatives. Besides, the woodpecker isolates significantly differed from each other in their whole-cell protein profiles, DNA fingerprints, and ANIb values. In conclusion, the isolated microorganisms constitute members of two new species, for which the names Kocuria uropygioeca sp. nov. and Kocuria uropygialis sp. nov. are proposed. The type strains are 36^T (DSM 101740^T = LMG 29265^T) and 257^T (=DSM 101741^T = LMG 29266^T) for K. uropygialis sp. nov. and K. uropygioeca sp. nov., respectively.     

The lichenicolous species of Odontotrema (syn. Lethariicola) (Ascomycota,Ostropales)

Abstract:The genus Lethariicola is shown to be a synonym of Odontotrema. Fifteen lichenicolous species are recognized: O. bryoriae sp. nov. (on Bryoria), O. cuculare comb. nov. (on Parmeliopsishyperopta), O. figulinum comb. nov. (on Lecanorapolytropa), O. intermedium sp. nov. (on Thamnolia), O. lecanorae sp. nov. (on Lecanora), O. melaneliae sp. nov. (on Melanelia), O. ochrolechiae sp. nov. (on Ochrolechia), O. pertusariae sp. nov. (onPertusariahymenea ), O. rhizocarpicola sp. nov. (on Rhizocarpon), O. santessonii sp. nov. (on Thamnolia), O. sipei comb. nov. (on Letharia), O. thamnoliae sp. nov. (onThamnolia ), and three undescribed species on Lecanora, Mycoblastus and Usnea. The type ofO. cuculare has two distinct lichenicolous species of Odontotrema, and the name is lectotypified on the species growing on Parmeliopsis. A key is given to all lichenicolous species of Odontotrema andParalethariicola .     

Palynology of the Dockum group (Upper Triassic), Texas,U.S.A.

A palynofloral assemblage is described from the Upper Triassic Dockum Group of Texas. Forty palynomorph species are recorded and these are correlated with European Upper Triassic assemblages. The Dockum Group assemblage is considered to be of late Karnian age.Two new genera, Tulesporites gen. nov., type species T. briscoensis sp. nov., and Daughertyspora gen. nov., type species D. chinleanus (Daugherty) comb. nov. have been erected; new species are Converrucosisporites matsenii sp. nov., Pyramidosporites traversei sp. nov., Callialasporites triassicus sp. nov., Plicatipollenites minutotriletus sp. nov., Triadispora dockumensis sp. nov., Bhardwajispora jansonii sp. nov., Protodiploxypinus americus sp. nov., P. ujhelyi sp. nov., Klausipollenites gouldii sp. nov., Pityosporites old-hamensis sp. nov., Abietineaepollenites bujakii sp. nov., Falcisporites oviformis sp. nov. and F. tecovasensis sp. nov.     

Review of the genus Eusterinx Förster, 1869 (Hymenoptera: Ichneumonidae: Orthocentrinae) with descriptions of five new species from South Korea

South Korean species of the genus Eusterinx Förster are reviewed here. Nine species of the genus Eusterinx are found to occur in South Korea, and five species, Eusterinx (E.) elongata sp. nov. , E. (Holomeristus) hirtis sp. nov. , E. (Ischyracis) fulvipes sp. nov. , E. (I.) petiolata sp. nov. and E. (I.) rufithorax sp. nov. , are described. Four more species of Eusterinx from subgenera Divinatrix, Eusterinx and Holomeristus are recorded from South Korea for the first time. Hitherto, unknown male of the Eastern Palaearctic species E. (Divinatrix) kurilensis Humala is described. A key to all known species of the genus Eusterinx occurring in South Korea is provided.     

Lecithoceridae (Lepidoptera: Gelechioidea) of New Guinea: Part II. Hamatina gen. nov., with descriptions of four new species

This is the second part in a series of taxonomic studies on the family Lecithoceridae (Lepidoptera: Gelechioidea) of New Guinea. A new genus, Hamatina gen. nov., is described, based on the type species, H. hemitoma (Diakonoff), comb. nov., and four new species are described: H. nabangae sp. nov., H. robdevosi sp. nov., H. jembatana sp. nov., and. iriana sp. nov. A key to four allied genera is given. Adults, heads, labial palpi, wing venations, and the male genitalia are illustrated.     

Two new species of Staurotheca Allman, 1888 (Cnidaria, Hydrozoa, Sertulariidae) from the Scotia Sea (Antarctica)

Two new species of the genus Staurotheca Allman, 1888 have been studied (Staurotheca cornuta sp. nov. and Staurotheca multifurcata sp. nov). The material, from the Scotia Ridge area (Antarctica), was collected in 1986/1987 by the Spanish Antarctic expedition “Antártida 8611”. Each species is described and figured, and its systematic position among allied species is noted. Data concerning autecology and geographical distribution for each species are given. A comparative table listing the main features of the known species of the genus is included. Finally, a general survey of the geographical and bathymetrical distribution of the known species of the genus is presented. Accepted: 1 September 1998     

Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. isolated from human clinical infections

Two groups of previously undescribed anaerobic, gram-positive cocci recovered from human clinical infections were characterized using phenotypic and molecular genotypic methods. Comparative genotypic analysis showed that the strains within each of these two groups were homogeneous within the group and that each group was unique within the genus Peptoniphilus. The first group is most closely related to Peptoniphilus ivorii and the second group to Peptoniphilus harei. Based on these findings we propose two novel species, Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. The type strains are P. coxii sp. nov., RMA 16757^T (= JCM 16892^T = CCUG 59622^T = ATCC BAA-2106^T) and P. tyrrelliae sp. nov., RMA 19911^T (= JCM 16893^T = CCUG 59621^T = ATCC BAA-2105^T).     

Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae,isolated from coral reef seawater off Ishigaki Island,Japan

Two phylogenetically distinct Vibrionaceae strains C4II189^T and C4V358^T isolated from reef seawater off Ishigaki Island, Japan, in 2014 were studied with advanced genome-based taxonomy approaches. All aspects of phylogenetic (16S rRNA phylogeny, MLSA), phenotypic and genetic (ANI, DDH, AAI, and the number of core genes) cohesions between the two identified species were high enough to propose them as members of a new genus within the family Vibrionaceae. Consequently, an eighth genus Thaumasiovibrio gen. nov. is proposed that contains two new species Thaumasiovibrio occultus sp. nov. strain C4II189^T (=DSM 101554^T = JCM 31629^T) (type species) and Thaumasiovibrio subtropicus sp. nov. strain C4V358^T (=DSM 101555^T = JCM 31630^T). Thaumasiovibrio species were phylogenetically distinct from the other Vibrionaceae species based on pyrH gene sequences. The combination of catalase negative, sensitivity to vibriostatic agent O/129, and green colony formation on TCBS for the phylogenetically affiliated strains was the diagnostic features for the current tentative identification of this genus.     

Description of two cultivated and two uncultivated new Salinibacter species,one named following the rules of the bacteriological code: Salinibacter grassmerensis sp. nov.; and three named following the rules of the SeqCode: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae sp. nov.

Current -omics methods allow the collection of a large amount of information that helps in describing the microbial diversity in nature. Here, and as a result of a culturomic approach that rendered the collection of thousands of isolates from 5 different hypersaline sites (in Spain, USA and New Zealand), we obtained 21 strains that represent two new Salinibacter species. For these species we propose the names Salinibacter pepae sp. nov. and Salinibacter grassmerensis sp. nov. (showing average nucleotide identity (ANI) values < 95.09% and 87.08% with Sal. ruber M31^T, respectively). Metabolomics revealed species-specific discriminative profiles. Sal. ruber strains were distinguished by a higher percentage of polyunsaturated fatty acids and specific N-functionalized fatty acids; and Sal. altiplanensis was distinguished by an increased number of glycosylated molecules. Based on sequence characteristics and inferred phenotype of metagenome-assembled genomes (MAGs), we describe two new members of the genus Salinibacter. These species dominated in different sites and always coexisted with Sal. ruber and Sal. pepae. Based on the MAGs from three Argentinian lakes in the Pampa region of Argentina and the MAG of the Romanian lake Fără Fund, we describe the species Salinibacter pampae sp. nov. and Salinibacter abyssi sp. nov. respectively (showing ANI values 90.94% and 91.48% with Sal. ruber M31^T, respectively). Sal. grassmerensis sp. nov. name was formed according to the rules of the International Code for Nomenclature of Prokaryotes (ICNP), and Sal. pepae, Sal. pampae sp. nov. and Sal. abyssi sp. nov. are proposed following the rules of the newly published Code of Nomenclature of Prokaryotes Described from Sequence Data (SeqCode). This work constitutes an example on how classification under ICNP and SeqCode can coexist, and how the official naming a cultivated organism for which the deposit in public repositories is difficult finds an intermediate solution.     

Pronemouridae fam. nov. (Insecta: Plecoptera), the stem group of nemouridae and notonemouridae,from the Middle Jurassic of Inner Mongolia,China

Abstract: A new family, Pronemouridae fam. nov., with a new genus, Pronemoura gen. nov., and five new species of fossil stoneflies are described from Daohugou village (Middle Jurassic), Inner Mongolia, China: P. shii sp. nov., P. angustithorax sp. nov., P. longialata sp. nov., P. minuta sp. nov. and P. peculiaris sp. nov. Wing venation of pronemourinids presents some or considerable variety in the fore and hind wings of the same or different individuals. Pronemourinidae, retaining plesiomorphic characters (short, multisegmented cerci and CuA with forks), should be treated as the stem group of Nemouridae and Notonemouridae. Based on fossil data, we propose a model in which the extant plecopterid distribution began in the Early Cretaceous. Nemouridae and Notonemouridae must have occurred in Asia and begun to migrate from here by at least the Early Cretaceous.     

Mesozoic leaf beetles of the tribe Mesolpinini trib. nov. (Coleoptera,Chrysomelidae) from the Lower Cretaceous

This publication is based on recent studies of Lower Cretaceous leaf beetles from the Yixian Formation (Liaoning, China), which are represented by five new species of one new genus Mesolpinus gen. nov. (M. antenattus sp. nov. [type species], M. adapertilis sp. nov., M. angusticollis sp. nov., M. basicollis sp. nov., and M. trapezicollis sp. nov.) assigned to a new tribe, Mesolpinini trib. nov. of the subfamily Chrysomelinae. This tribe, which includes only species from the Jehol biota, is the oldest known group of the family in the fossil record. A key to species of the genus Mesolpinus gen. nov. is provided and the position of the new tribe is discussed. A brief overview of the Mesozoic data on the subfamily Chrysomeloidea is given.     

A new species of Golunda (Rodentia, Muridae) from the Late Pleistocene of Indian Himalaya

The youngest fossil Golunda (Rodentia, Muridae) is described from the Late Pleistocene fluvio-lacustrine deposits, exposed at Dulam (Bageshwar), Kumaun Lesser Himalaya, India. The age of fossiliferrous horizon is estimated as 31,000 yr BP. A new species, Golunda dulamensis nov. sp. has highly derived characters, e.g., antero-posteriorly stretched molars, upper molars with more length and less width, stephanodonty, cusps in M₃ strongly inclined backward giving the molars a very stretched aspect, and metaconid and entoconid in M₃ forming almost straight lingual row of the cusps. G. dulamensis nov. sp. is most similar to present day G. ellioti but differs from the later slightly by larger size, a thin connection between t₄ and t₅ in M¹, and comparatively larger entoconid and very weakly developed antero-labial cusp in M₃. We suggest that highly specialized molars of G. dulamensis nov. sp. and present day G. ellioti are derivable through G. kelleri. We also propose that Golunda migrated from Asia to Africa, not from Africa to Asia as was thought by earlier workers.     

Unravelling the Biodiversity and Molecular Phylogeny of Needle Nematodes of the Genus Longidorus (Nematoda: Longidoridae) in Olive and a Description of Six New Species

The genus Longidorus includes a remarkable group of invertebrate animals of the phylum Nematoda comprising polyphagous root-ectoparasites of numerous plants including several agricultural crops and trees. Damage is caused by direct feeding on root cells as well as by transmitting nepoviruses that cause disease on those crops. Thus, correct identification of Longidorus species is essential to establish appropriate control measures. We provide the first detailed information on the diversity and distribution of Longidorus species infesting wild and cultivated olive soils in a wide-region in southern Spain that included 159 locations from which 449 sampling sites were analyzed. The present study doubles the known biodiversity of Longidorus species identified in olives by including six new species (Longidorus indalus sp. nov., Longidorus macrodorus sp. nov., Longidorus onubensis sp. nov., Longidorus silvestris sp. nov., Longidorus vallensis sp. nov., and Longidorus wicuolea sp. nov.), two new records for wild and cultivate olives (L. alvegus and L. vineacola), and two additional new records for wild olive (L. intermedius and L. lusitanicus). We also found evidence of some geographic species associations to western (viz. L. alvegus, L. intermedius, L. lusitanicus, L. onubensis sp. nov., L. vineacola, L. vinearum, L. wicuolea sp. nov.) and eastern distributions (viz. L. indalus sp. nov.), while only L. magnus was detected in both areas. We developed a comparative study by considering morphological and morphometrical features together with molecular data from nuclear ribosomal RNA genes (D2–D3 expansion segments of 28S, ITS1, and partial 18S). Results of molecular and phylogenetic analyses confirmed the morphological hypotheses and allowed the delimitation and discrimination of six new species of the genus described herein and four known species. Phylogenetic analyses of Longidorus spp. based on three molecular markers resulted in a general consensus of these species groups, since lineages were maintained for the majority of species. This study represents the most complete phylogenetic analysis for Longidorus species to date.