Modern diatom assemblages in Central Mexico: the role of water chemistry and other environmental factors as indicated by TWINSPAN and DECORANA

SUMMARY. 1. Modern diatom samples, for which physical and chemical environmental conditions were recorded, were collected from forty-seven sites across Central Mexico
2. The results of the diatom counts were analysed using the clustering program TWINSPAN and the ordination program DECORANA.
3. Results from 'Laguna Zacapu and associated sites' showed that where water chemistry varies little between sample sites the effects of habitat are emphasized. This data set highlighted the problems of looking for modern analogues where anthropogenic disturbance is great.
4. TWINSPAN results from the 'Other Sites' data set suggested possible changes in diatom assemblages with chemical composition. The DECORANA analyses, however, again seemed to emphasize habitat.
5. In the context of this study, bottom sediment samples appeared to provide the most useful picture of 'average' conditions and to be the best source of analogues for the interpretation of fossil assemblages.     

Spatial variations in the water quality of Lough Erne, Northern Ireland, on the basis of surface sediment diatom analysis

SUMMARY. 1. Constrained cluster analysis of thirty-five surface sediment diatom assemblages shows that Lough Erne, a complex multi-basin lake in Northern Ireland, can be sub-divided into four main zones.
2. All areas of the lake system have planktonic diatoms typical of eutrophic lakes but the lack of small Stephanodiscus species in zone 4 suggests that this area of the system is least productive.
3. Surface sediment diatom assemblages can be used to assess spatial variations in complex lake systems and can thereby be used as a guide to the choice of sites for water quality monitoring and sediment coring.     

Sedimentation in a large lake: the importance of fluctuations in water level

1. A sediment trap study was conducted in the central basin of Lower Lough Erne, Northern Ireland.
2. The material caught was low in organic matter, ash weight was 77% of dry weight on average.
3. Mass deposition of material was shown to be correlated with lake water level. When lake water level fell or rose above the middle range, the amount of material caught by the trap increased markedly. The effect was exaggerated by an unusually dry summer in 1995 which caused abnormally low water levels in the lake.
4. Comparison of Erne data with Windermere shows similar deposition rate of many substances, but the deposition rate of iron is thirteen times higher in Erne than in Windermere, and iron made up 39% of the ash weight in the Erne trap data.
5. Only 17% of the silica removed from the water column during diatom growth was recovered in the trap over the same time period.
6. Trap data are compared with historical data for sediment deposition and the implications of sediment focusing are discussed.     

Analysis of multiple depth profiles in sediment cores: an application to pollen and diatom data from lakes sensitive to acidification

The methods of clustering and ordination were compared with polynomial and segmented regression methods by application to the pollen and diatom profiles from two sediment cores obtained from lakes susceptible to acid precipitation. Clustering and ordination methods have previously been used to determine zones in sediment profiles, but regression methods which summarize the changes with depth in terms of one or more smooth curves, explicitly use the depth information. Plots of running means were also used to characterize profile shapes. The latter two methods provided a clearer understanding of the changes in diatom and pollen levels in the cores. For low diatom concentrations, non-parametric methods were used to test for a change in concentration with depth. Changes in dry weight of sediment, different bases for concentration and depth, and the effect of poor represententation of an extreme group on the pH spectrum were also considered. The regression procedures were shown to provide summaries useful for comparison of different species or of the same species in different cores. Finally, a summary is given of the similarity of the patterns in the depth profiles of eight pollen types and the non-rare diatom species in one core from each of Kejimkujik and Beaverskin Lakes, respectively.     

Distribution patterns of diatom surface sediment assemblages in the Laptev Sea (Arctic Ocean)

The modern diatom distribution in the Laptev Sea, Arctic Ocean, was investigated in 89 surface sediment samples. Diatom concentrations are relatively low showing values between 0.01×10⁶ and 6.7×10⁶ valves per gram dry sediment. Based on a factor analysis using seventeen taxa or taxa groups five diatom surface sediment assemblages can be defined: the ice diatom assemblage of the central region of the Laptev Sea, the Chaetoceros assemblage of the eastern and southeastern shelf, the Thalassiosira antarctica assemblage of the continental slope and deep sea, the freshwater diatom assemblage in the vicinity of river mouths and deltas, and the Thalassiosira nordenskioeldii assemblage which shows a patchy occurrence on the central Laptev Sea shelf. The distribution pattern of diatom assemblages in surface sediment is significantly related to oceanographic conditions of surface water masses. The main factors controlling the distribution of diatoms in the Laptev Sea are the riverine freshwater input during the summer which strongly affects the salinity conditions, and the sea-ice extent. Furthermore, the composition of the Thalassiosira antarctica assemblage of the continental slope is largely influenced by dissolution and lateral transport processes.     

Relationship Between Surface Sediment Diatoms and Summer Water Quality in Shallow Lakes of the Middle and Lower Reaches of the Yangtze River

The relationship between surface sediment diatoms and summer water quality was investigated at 49 lakes in the middle and lower reaches of the Yangtze River. Lakes ranging from oligomesotrophic to hypereutrophic were examined, providing an obvious nutrient gradient. With the shift from mesotrophic to eutrophic levels, diatom multi-ecotypes dominated by epiphytic and facultative planktonic taxa were replaced by nutrient-tolerant planktonic taxa, such as Cyclotella meneghiniana Skvortzow, C. atomus Hustedt,Cyclostephanos Round, and Stephanodiscus Ehrenberg etc., reflecting the nutrient changes in the lake.The relationship between diatoms and summer water quality indices was explored further using numeric analysis. Canonical correspondence analysis (CCA) with forward selection and a Monte Carlo permutation test revealed that of all 25 summer water environmental variables, total phosphorus (TP), chlorophyll a (Chzl a), Secchi depth (SD), dissolved inorganic phosphorus, C1-, SO42-, Mg2 , CO32-, and water depth were significant variables (P＜0.05) in explaining diatom distributions. Of these, TP, Chl a, SD, and C1-, were the most important variables. The result of the correlation analysis also showed that a significant correlation exists among these variables, implying that these indices are either interconnected or independent in explaining the diatom data. For phosphorus-limited sites, TP was the most significant variable affecting the diatoms, also affecting changes in Chl a, SD, and iron concentrations. The independence of Chl a may be related to algal competition induced by lake eutrophication, resulting in the feedback to diatom community.In addition to TP, SD can be related to sediment disturbance by wave action and the growth of macrophytes in large shallow lakes. These relationships between diatom ecotypes and water quality provide the basis for a future quantitative reconstruction of historic lake nutrient evolution in the study area and will also provide a wealth of modern ecological knowledge that can be used to interpret fossil diatom records.     

Diatom preservation: experiments and observations on dissolution and breakage in modern and fossil material

Selected aspects of diatom preservation in both laboratory and field environments are examined with a view to improving techniques and to help understand why only some lake sediments have good diatom preservation.Laboratory measurements of biogenic silica following diatom dissolution by alkali digestion are questioned because results are shown to be dependant on initial sample size. Diatom breakage experiments identified drying carbonate rich sediment as a major cause of fragmentation of the large robust diatom Campylodiscus clypeus Ehrenb. Diatom dissolution experiments in carbonate media indicated that carbonate rich lakes should preserve diatoms better in order of the particular alkali metal type (Ca > Mg > Na). A preliminary assessment of the role of depth in diatom preservation is made for Lake Baikal where partly dissolved Cyclotella are more common in deep water surface sediments. The effect of time on diatom dissolution is examined in a saline lake sediment core and by comparing dissolution rates of recent and geologically old diatom samples in the laboratory. A simple link between diatom dissolution and sample age was not established. Factors thought to be important in controlling diatom preservation in lake sediments are discussed.     

Whitemere, a lake that defies some conventions about nutrients

1. Whitemere, a kettle-hole lake in north-west England (z_m,14 m, area 22.5 ha) has extremely high maximal concentrations (around 1 mg L⁻¹) of total phosphorus (TP) and soluble reactive phosphorus (SRP), and comparatively low maximal concentrations of dissolved inorganic nitrogen (<0.5 mg N L⁻¹). Bioassays indicate that its phytoplankton is nitrogen limited, and it has surface blue-green algal blooms in summer. Palaeoecological investigations have shown that high populations of cyanophytes occurred more than 6000 years ago, even before human settlement of the catchment.
2. The reasons for this combination of features are not immediately clear. This paper attempts to distinguish between two hypotheses: that the high phosphorus concentrations arise from input of phosphate-rich groundwater; and that the high phosphorus concentrations arise from concentration and recycling mechanisms within the lake.
3. The lake is entirely fed by ground water, direct rainfall and surface sheet flow. The concentrations of phosphorus in the ground water are much lower than in the lake water. The lake is stratified and has high phosphorus concentrations in the anaerobic hypolimnion in summer as a result of substantial release from the sediment. Vertical turbulence in the relatively weakly stratified water column may transfer substantial amounts to the epilimnion.There is also substantial phosphorus release from the sediments under the aerobic epilimnion.
4. There is little outflow of water and phosphorus. Most of the phosphorus is returned to the sediment under winter isothermal conditions, to be released again the following summer. The lake has probably maintained these mechanisms for millennia. Recent eutrophication is likely to have been driven by nitrogen inputs from greater intensification of agriculture in the catchment.     

DIATOM PALEOLIMNOLOGY OF TWO FLUVIAL LAKES IN THE ST. LAWRENCE RIVER: A RECONSTRUCTION OF ENVIRONMENTAL CHANGES DURING THE LAST CENTURY

Water quality degradation is a serious concern for the St. Lawrence River. While some environmental data are available for the St. Lawrence ecosystem, long-term monitoring data are generally lacking. To infer past environmental changes, we undertook a paleolimnological assessment of diatom assemblages preserved in four ²¹⁰Pb- and ¹³⁷Cs-dated sediment cores from two fluvial lakes in the river, and used diatom transfer functions to infer past shoreline habitat characteristics. At sites in Lake Saint-François, a fluvial lake downstream from Cornwall, water quality decreased this century in response to human impacts (e.g. macrophyte density and nutrient levels increased). These trends were apparent from an increase in epiphytic diatom taxa, followed by an increase in eutrophic planktonic taxa. Water quality, however, appears to have improved somewhat in response to rehabilitation measures during the last two decades. From a sediment core near Montréal (Lake Saint-Louis), we also noted a large proportion of eutrophic and epiphytic taxa, but less evidence was recorded of a recent improvement in water quality. The diatom-based inference model for habitat characteristics appeared to reconstruct environmental conditions in the St. Lawrence River during the last century. The most notable shift has been an increase in diatom taxa commonly associated with macrophyte substrates. Trends in some of the planktonic diatoms were similar to those recorded in paleolimnological investigations from Lake Ontario, but cores from the river also may be reflecting local environments. This study shows that diatom-based paleolimnological studies are possible in large river systems, if coring sites (e.g. fluvial lakes) are carefully selected.     

Relationship Between Surface Sediment Diatoms and Summer Water Quality in Shallow Lakes of the Middle and Lower Reaches of the Yangtze River

The relationship between surface sediment diatoms and summer water quality was investigated at 49 lakes in the middle and lower reaches of the Yangtze River. Lakes ranging from oligomesotrophic to hypereutrophic were examined, providing an obvious nutrient gradient. With the shift from mesotrophic to eutrophic levels, diatom multi-ecotypes dominated by epiphytic and facultative planktonic taxa were replaced by nutrient-tolerant planktonic taxa, such as Cyclotella meneghiniana Skvortzow, C. atomus Hustedt, Cyclostephanos Round, and Stephanodiscus Ehrenberg etc., reflecting the nutrient changes in the lake. The relationship between diatoms and summer water quality indices was explored further using numeric analysis. Canonical correspondence analysis (CCA) with forward selection and a Monte Carlo permutation test revealed that of all 25 summer water environmental variables, total phosphorus (TP), chlorophyll a (Chl a), Secchi depth (SD), dissolved inorganic phosphorus, Cl–, SO42–, Mg2+, CO32–, and water depth were significant variables (P<0.05) in explaining diatom distributions. Of these, TP, Chl a, SD, and Cl–, were the most important variables. The result of the correlation analysis also showed that a significant correlation exists among these variables, implying that these indices are either interconnected or independent in explaining the diatom data. For phosphorus-limited sites, TP was the most significant variable affecting the diatoms, also affecting changes in Chl a, SD, and iron concentrations. The independence of Chl a may be related to algal competition induced by lake eutrophication, resulting in the feedback to diatom community. In addition to TP, SD can be related to sediment disturbance by wave action and the growth of macrophytes in large shallow lakes. These relationships between diatom ecotypes and water quality provide the basis for a future quantitative reconstruction of historic lake nutrient evolution in the study area and will also provide a wealth of modern ecological knowledge that can be used to interpret fossil diatom records.     

The validation of diatom-phosphorus transfer functions: an example from Mondsee, Austria

1. A diatom-phosphorus weighted averaging (WA) transfer function, derived from a training set of currently oligotrophic to mesotrophic European Alpine lakes, was applied to a high-resolution sediment core with annual laminae from Mondsee, an Austrian pre-alpine lake, in order to reconstruct the eurrophication history of the lake. 2. The water chemistry records of total phosphorus (TP) available for Mondsee were compared with the diatom-inferred TP from the model for the period 1975–93. The trend in TP values as inferred by the model paralleled the monitored trend in TP values closely, with matching peaks in 1979/80, a decrease in values from the early 1980s, a second smaller peak in 1986/7, and a further reduction in concentrations in the last 6 years. 3. However, there was a clear mismatch between the actual timing of the major TP peak, with the water chemistry records reporting its occurrence in 1979, and the diatom model indicating a small peak in 1980 and the highest concentrations in 1982. This can be attributed to the uncertainty of the sediment chronology for this section of the core, and possibly to the inconsistency between the core resolution and the resolution of the diatom model. 4. In terms of the actual concentrations of TP inferred by the model, they compared reasonably well with the measured data, although the model tends to underestimate for the lower core section owing largely to poor diatom assemblage analogues. In the upper part of the core, the diatom-inferred TP values were in extremely close agreement with the monitored chemical data. 5. This validation study indicates that diatom-phosphorus transfer functions are robust and are able reliably to infer past-TP concentrations from fossil diatom assemblages in sediment cores. Despite the natural intra- and interannual variability in diatom assemblages and epilimnetic water chemistry, the technique can provide accurate estimates of TP with an annual resolution. The model can be applied to selected sites with suitable sediment records to reconstruct lake TP histories, thus providing a pragmatic management tool for addressing lake eutrophication problems.     

Water level changes in a large shallow lake as reflected by the plankton:periphyton-ratio of sedimentary diatoms

Biostratigraphic diatom analyses were carried out on a short sediment core from the large shallow-water Lake Võrtsjärv, Estonia, in order to relate the diatom composition to the instrumental water level record. We dated the sediment core by radiometric methods (²¹⁰Pb, ¹³⁷Cs, ²⁴¹Am) and spheroidal fly-ash particle abundance chronology and evaluated the statistical significance of the relationships between the percentage of planktonic diatoms and the water level continuously monitored since 1871. Before the 1960s, the percentage of planktonic diatoms in the sediment showed quite strong positive relationship to water level. The impact of eutrophication after the 1960s presumably masked the influence of water level changes on the diatom community. In addition, statistical analysis of the upper part of the sediment core (1970—present day) together with measured limnological parameters of the lake showed that water transparency had the strongest influence on diatoms, while temperature, pH and alkalinity had lesser impacts. Our study shows that the planktonic:periphytic diatom ratio in the sediment can be used to track overall trends of the lake-level changes in Lake Võrtsjärv before the onset of cultural eutrophication; however, the results have to be interpreted carefully, taking into consideration other possible limnological factors such as water transparency, nutrients and wind.     

Measurements of phosphorus uptake by macrophytes and epiphytes from the LaPlatte River (VT) using 32P in stream microcosms

1. Phosphorus (P) uptake by macrophytes and epiphytes from the LaPlatte River (VT) was examined in the laboratory by adding ³²PO₄‐P to recirculating stream microcosms.
2. Water, plugs of sediment and plants were removed from the river and placed into the microcosms. ³²PO₄‐P was then added either to the water or the sediment, and its incorporation into plants and epiphytes was monitored over 3 days. Uptake was examined at both ambient (5 μg L^–1) and increased (50 μg L^–1) soluble reactive phosphorus (SRP) concentrations. A computer program was developed to fit curves to the radiotracer data and calculate rate constants for the simultaneous transfer of ³²P among compartments.
3. Both macrophytes and epiphytes removed P from the water, but epiphyte uptake of P was more rapid. Phosphate enrichment stimulated P uptake by both macrophytes and epiphytes. Macrophytes also obtained P from the sediment. The relative contribution of P to macrophytes from the water vs. that from the sediment appeared to vary with SRP in the overlying water. Accurate estimates of rates of P uptake from sediments by macrophytes were difficult to obtain however, due to very low and highly variable unit rate constants for P uptake and uncertainty about the magnitude of the phosphate pool available for uptake.
4. SRP concentrations were greater in the overlying water than in the sediment pore water of stream microcosms in the present study. Numerous reports in the literature have suggested that this condition favours uptake by macrophyte stems and leaves rather than by roots.
5. Phosphate uptake from the water by macrophytes in shallow streams may be more common than for macrophytes in lakes.     

The seasonal response of diatom communities to variable water quality in some English urban lakes

SUMMARY. 1. Five diatom assemblages and their corresponding site groups were associated with the urban lakes. When treated as a single dataset, DC A and PCA grouped these diatom assemblages along an environmental gradient from circum natural. dilute waters to strongly alkaline, concentrated, nutrient-rich waters.
2. When treated as individual datasets, 75% of the known variance was explained by the first axis of DCA in all five diatom assemblages; this indicated the existence of a strong primary environmental gradient. The PCA results showed that the identity of this primary environmental gradient can be different for each assemblage.
3. The statistical analyses showed that the physicochemical gradients were continuous and not discrete. Nevertheless, fine-scale analysis can identify smaller, more precise species and site groups.
4. Two types of species response could be identified within most sub-assemblages in the urban lakes: the first was a quasi-seasonal response and was characterized by a gradual rise to a peak relative abundance of one dominant or several co-dominant species which could be sustained for a period of weeks before a gradual decline. A quasi-seasonal response was sometimes interrupted by a storm response. The storm response was characterized by a sudden increase in the relative abundance of one or more diatom species following a storm, after which the species declined to pre-storm abundances within 7 days.
5. The effects of urban runoff on the water quality of urban lakes can override the effects of true seasonal factors such as water temperature and day length on the relative abundance of species.     

Laurentian Great Lakes Phytoplankton and Their Water Quality Characteristics,Including a Diatom-Based Model for Paleoreconstruction of Phosphorus

Recent shifts in water quality and food web characteristics driven by anthropogenic impacts on the Laurentian Great Lakes warranted an examination of pelagic primary producers as tracers of environmental change. The distributions of the 263 common phytoplankton taxa were related to water quality variables to determine taxon-specific responses that may be useful in indicator models. A detailed checklist of taxa and their environmental optima are provided. Multivariate analyses indicated a strong relationship between total phosphorus (TP) and patterns in the diatom assemblages across the Great Lakes. Of the 118 common diatom taxa, 90 (76%) had a directional response along the TP gradient. We further evaluated a diatom-based transfer function for TP based on the weighted-average abundance of taxa, assuming unimodal distributions along the TP gradient. The r² between observed and inferred TP in the training dataset was 0.79. Substantial spatial and environmental autocorrelation within the training set of samples justified the need for further model validation. A randomization procedure indicated that the actual transfer function consistently performed better than functions based on reshuffled environmental data. Further, TP was minimally confounded by other environmental variables, as indicated by the relatively large amount of unique variance in the diatoms explained by TP. We demonstrated the effectiveness of the transfer function by hindcasting TP concentrations using fossil diatom assemblages in a Lake Superior sediment core. Passive, multivariate analysis of the fossil samples against the training set indicated that phosphorus was a strong determinant of historical diatom assemblages, verifying that the transfer function was suited to reconstruct past TP in Lake Superior. Collectively, these results showed that phytoplankton coefficients for water quality can be robust indicators of Great Lakes pelagic condition. The diatom-based transfer function can be used in lake management when retrospective data are needed for tracking long-term degradation, remediation and trajectories.     

Diatoms as indicators of water quality in some English urban lakes

SUMMARY. 1. The paper describes diatom communities from a series of linked urban lakes in relation to water chemistry and uses multivariate statistical techniques to show how indicator groups can he defined.
2. Diatoms are classified into ecological groups using two-way species indicator analysis (TWINSPAN). Each ecological group is associated with a specific range of water-quality conditions. The headwater stream environments are differentiated from the lake habitats at level 1. At level 2 of TWINSPAN. the sampling sites are grouped into five ecological groups, according to their water chemistry and irrespective of the time of year.
3. Detrended correspondence analysis (DCA) and principal components analysis (PCA) provide two statistically independent methods of assessing the environmental gradients along which the ecological groups are distributed. The most important physico-chemical parameters are total hardness, specific conductance and pH, followed by phosphates and nitrates.
4. Ecological groups I-V correspond to an environmental gradient ranging from the forested headwaters, which are acidic, of low specific conductance, total hardness and nutrient content, through the urban lakes, which are alkaline and of relatively high total hardness, specific conductance and nutrient content.
5. Twelve site groups are identified at level 3 of TWINSPAN, each of which corresponds to a narrower range of water-quality conditions within the ecological groupings. A specific diatom assemblage is associated with each site group.
6. Benthic diatoms form an integral part of the diatom assemblages found in the water column and this is identified as a topic for further study.     

Are the landscape‐level drivers of water column and surface sediment diatoms different?

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The ordination and classification of macroinvertebrate assemblages in the catchment of the River Wye in relation to environmental factors

SUMMARY. 1. Macroinvertebrates were sampled from three habitats at forty-five sites in the catchment of the Welsh River Wye. Species assemblages were ordinated by DECORANA. classified by TWIN-SPAN and related to physico-chemical factors using correlation and multiple discriminant analysis respectively.
2. DECORANA axis 1 was correlated with pH or total hardness, whilst axis 2 correlated with slope or distance from source. TWINSPAN groupings were also related to hardness and, to a lesser extent, slope. Assemblages at soft-water sites (<15gm⁻³ CaCO₃) were composed mostly of Plecoptera but at hard-water sites, even at high slope (>10 m km⁻¹), the fauna was dominated numerically by Ephemerop-tera, net-spinning Trichoptera, Mollusca and Crustacea.
3. We suggest that our data do not support the River Continuum Concept unless there are modifications to allow for multiple gradients.     

Application of microbial source tracking methods in a Gulf of Mexico field setting

Aims:  Microbial water quality and possible human sources of faecal pollution were assessed in a Florida estuary that serves shellfishing and recreational activities.
Methods and Results:  Indicator organisms (IO), including faecal coliforms, Escherichia coli and enterococci, were quantified from marine and river waters, sediments and oysters. Florida recreational water standards were infrequently exceeded (6–10% of samples); however, shellfishing standards were more frequently exceeded (28%). IO concentrations in oysters and overlaying waters were significantly correlated, but oyster and sediment IO concentrations were uncorrelated. The human-associated esp gene of Enterococcus faecium was detected in marine and fresh waters at sites with suspected human sewage contamination. Lagrangian drifters, used to determine the pathways of bacterial transport and deposition, suggested that sediment deposition from the Ochlockonee River contributes to frequent detection of esp at a Gulf of Mexico beach.
Conclusions:  These data indicate that human faecal pollution affects water quality in Wakulla County and that local topography and hydrology play a role in bacterial transport and deposition.
Significance and Impact of the Study:  A combination of IO enumeration, microbial source tracking methods and regional hydrological study can reliably inform regulatory agencies of IO sources, improving risk assessment and pollution mitigation in impaired waters.