Ice diatom floras,Arthur Harbor,Antarctica

Summary Sea-ice microflora was collected from December 1971 to November 1972 from a variety of types of sea ice in the vicinity of Arthur Harbor, Anvers Island, Antarctic Peninsula. Sixty-seven identifiable species of diatoms, one silicoflagellate and several archaeomonads were recoverd from the ice. Of these, only 24 diatoms and the archaeomonads were considered to be truly cryophilic based on their occurrence and abundance. Qmode factor analysis revealed that four factors (species occurrences) account for 89% of the data. In a general way, these four factors are related to ice type-shore ice protected from turbulence, grounded pack ice, slush ice and sea ice. Shannon-Wiener species diversity functions range from 0.000 (monospecific) to 3.0515 (dominance divided among 9 species). Diversity also appeared to be related to ice type-protected shore ice was low, sea ice was intermediate, and grounded pack, exposed shore ice and slush were higherst. Short-term varibility in physical/biotic environment may control species diversity. Sea-ice assemblages may be useful in paleoclimatic interpretations of past ice distributions.     

Effects of nitrogen,phosphorus, iron and silicon on growth of five species of marine benthic diatoms

The effects of nitrogen, phosphorus, iron and silicon on growth of five species of marine benthic diatoms, namely Navicula patrickae, Nitzschia panduriformis, Navicula thienemannii, Nitzschia longissima and Navicula atomus were studied by single factor experiments and the optimal concentration ratios of the four nutrient elements beneficial for diatoms growth were screened out separately using the L₉ (3⁴) orthogonal design. The results highlighted that nitrogen, phosphorus, iron and silicon all had highly significant effects on growth of five diatoms while the diatoms growth rates reached the highest averagely in the 2nd to the 6th culture day. In addition, the optimal concentrations (mg/L) of four nutrients suitable for diatoms growth were found higher than that in f/2 medium except that Nitzschia longissima had the same concentration of nitrogen as that in f/2 medium which is optimal for growth. Moreover, the optimal growth concentrations of four elements for five diatoms varied in the range of 12.36–74.16 mg/L for nitrogen, 1.70–3.98 mg/L for phosphorus, 2.00–4.00 mg/L for iron, 23.01–69.03 mg/L for silicon, respectively. By means of the orthogonal test of four nutrients for five benthic diatoms, the optimal concentration ratios N:P:Fe:Si (mg/L) were obtained as follows: 74.16:2.27:3.33:23.01 for N. patrickae; 37.08:3.98:4.00:11.50 for N. panduriformis; 49.44:3.98:3.33:34.51 for N. thienemannii; 12.36:1.70:4.00:11.50 for N. longissima; 74.16:2.27:4.00:69.03 for N. atomus.     

CARBON FIXATION IN CULTURED MARINE BENTHIC DIATOMS1

The enzyme activity of ribulose 1, 5-bisphosphate carboxylase-oxygenase (RuBisCO) and phosphoenolpyruvate carboxylase (PEPC) was measured in four species of marine benthic diatoms isolated from subtidal sediments of Graveline Bayou, Mississippi. Enzyme activities were measured in cultures of Amphora micrometra Giffen, A. tenerrima Aleem and Hustedt, Nitzschia fontifuga Cholnoky, and Nitzschia vermicularis Grunow that were grown at light levels supporting μ_max and at light-limiting irradiances. All four species exhibited similar RuBisCO: PEP ratios (range = 1–1.8) at μ_max the lowest ratio (0.4) was observed in A. micrometra. Reduced light levels increased PEPC relative to that measured at μ_max in two species. Two-dimensional paper chromatography was used to determine the first products of carbon fixation in A. micrometra After a 15 s incorporation period, the first product of photosynthetic carbon fixation was 3-phosphoglycerate even though this alga had a PEPC activity that was three times higher than that of RuBisCO. After 30 s, over 50% of the recovered radioactivity was still in this compound. Stable carbon isotope analyses of a mixture of the four pennate diatoms also suggest the predominant carbon fixation pathway in these benthic diatoms was similar to C3 plants.     

Behavioural versus physiological photoprotection in epipelic and epipsammic benthic diatoms

Benthic diatoms are dominant primary producers in intertidal marine sediments, which are characterized by widely fluctuating and often extreme light conditions. To cope with sudden increases in light intensity, benthic diatoms display both behavioural and physiological photoprotection mechanisms. Behavioural photoprotection is restricted to raphid pennate diatoms, which possess a raphe system that enables motility and hence positioning in sediment light gradients (e.g. via vertical migration into the sediment). The main physiological photoprotection mechanism is to dissipate excess light energy as heat, measured as Non-Photochemical Quenching (NPQ) of chlorophyll fluorescence. A trade-off between vertical migration and physiological photoprotection (NPQ) in benthic diatoms has been hypothesized before, but this has never been formally tested. We exposed five epipelic diatom species (which move in between sediment particles) and four epipsammic diatom species (which live in close association with individual sand grains) to high light conditions, and characterized both NPQ and the relative magnitude of the migratory response to high light. Our results reveal the absence of a significant downward migratory response in an araphid diatom, but also in several raphid epipsammic diatoms, while all epipelic species showed a significant migratory response upon high light exposure. In all epipsammic species the upregulation of NPQ was rapid and pronounced; NPQ relaxation in low light conditions, however, occurred faster in the araphid diatom, compared with the raphid epipsammic species. In contrast, all epipelic species lacked a strong and flexible NPQ response and showed higher susceptibility to photodamage when not able to migrate. While overall our results support the vertical migration-NPQ trade-off, the lack of strong relationships between the capacity for vertical migration and NPQ within the epipsammic and epipelic groups suggests that other factors as well, such as cell size, substrate type and photoacclimation, may influence photoprotective strategies.     

Diatom survivorship in ballast water during trans-Pacific crossings

Ship ballast water is believed to be responsible for global dispersal of alien biota; mid-ocean ballast water exchange is most commonly used to mitigate this process. Diatoms are among the most abundant biotic-component in ballast water, yet their invasive biology is poorly understood. To test effectiveness of MOE we examined diatom species composition and cell density in two sets of samples. First, we examined samples collected daily during one 24 days long trans-Pacific crossing in tanks with and without ballast exchanged. Second, we used samples from 23 trans oceanic vessels arriving at Vancouver harbour where diatoms were collected on arrival. Up to 86,429 live diatom cells/l were found in the tanks, ~50% of the samples share up to eight species consistently present. Cell densities and species richness declined over time and with replacement of coastal ballast water by mid-oceanic water. In both data sets diatoms survive in the tanks for as long as 33 days despite ballast exchange.     

Growth form defines physiological photoprotective capacity in intertidal benthic diatoms

In intertidal marine sediments, characterized by rapidly fluctuating and often extreme light conditions, primary production is frequently dominated by diatoms. We performed a comparative analysis of photophysiological traits in 15 marine benthic diatom species belonging to the four major morphological growth forms (epipelon (EPL), motile epipsammon (EPM-M) and non-motile epipsammon (EPM-NM) and tychoplankton (TYCHO)) found in these sediments. Our analyses revealed a clear relationship between growth form and photoprotective capacity, and identified fast regulatory physiological photoprotective traits (that is, non-photochemical quenching (NPQ) and the xanthophyll cycle (XC)) as key traits defining the functional light response of these diatoms. EPM-NM and motile EPL showed the highest and lowest NPQ, respectively, with EPM-M showing intermediate values. Like EPL, TYCHO had low NPQ, irrespective of whether they were grown in benthic or planktonic conditions, reflecting an adaptation to a low light environment. Our results thus provide the first experimental evidence for the existence of a trade-off between behavioural (motility) and physiological photoprotective mechanisms (NPQ and the XC) in the four major intertidal benthic diatoms growth forms using unialgal cultures. Remarkably, although motility is restricted to the raphid pennate diatom clade, raphid pennate species, which have adopted a non-motile epipsammic or a tychoplanktonic life style, display the physiological photoprotective response typical of these growth forms. This observation underscores the importance of growth form and not phylogenetic relatedness as the prime determinant shaping the physiological photoprotective capacity of benthic diatoms.     

Genotypic and phenotypic variation in diatom silicification under paleo‐oceanographic conditions

Diatoms have co‐evolved with the silicon cycle and are largely responsible for reducing surface concentrations of silicate in the ocean to their present levels. We quantify silicification in marine diatoms at a range of high silicate concentrations representative of environments found over their geological history. The species examined include Stephanopyxis turris, an ancient centric species found throughout the Cenozoic, Thalassiosira pseudonana and Thalassiosira weissflogii, two younger centric species, and two pennate ecotypes of Staurosirella pinnata isolated from different nutrient regimes. Frustule thickness and micromorphological structure are strongly affected by silicate concentration. All species become increasingly silicified with silicate concentrations at concentrations vastly in excess of surface ocean concentrations today. In contrast, the half‐saturation constant for silicate uptake for most modern diatoms is below 2 μm . Based on the results, we hypothesize that silicate uptake is multiphasic in diatoms and that multiple silicate transport systems may have evolved in response to decreases in surface silicate concentration over geological time. The oldest species examined is more heavily silicified than the more modern species, presumably reflecting the conditions under which it originated. Yet diversification in silicification can be rapid, as illustrated by greater silicification in onshore versus the offshore ecotype of the same modern species. This work suggests that silicification of fossil frustules may eventually provide a paleoproxy for surface silicate concentrations over the Cenozoic, although development of species‐specific calibrations will be necessary and the effects of a range of environmental conditions must be investigated.     

Spatial variations in the water quality of Lough Erne, Northern Ireland, on the basis of surface sediment diatom analysis

SUMMARY. 1. Constrained cluster analysis of thirty-five surface sediment diatom assemblages shows that Lough Erne, a complex multi-basin lake in Northern Ireland, can be sub-divided into four main zones.
2. All areas of the lake system have planktonic diatoms typical of eutrophic lakes but the lack of small Stephanodiscus species in zone 4 suggests that this area of the system is least productive.
3. Surface sediment diatom assemblages can be used to assess spatial variations in complex lake systems and can thereby be used as a guide to the choice of sites for water quality monitoring and sediment coring.     

Lake warming favours small-sized planktonic diatom species

Diatoms contribute to a substantial portion of primary production in the oceans and many lakes. Owing to their relatively heavy cell walls and high nutrient requirements, planktonic diatoms are expected to decrease with climate warming because of reduced nutrient redistribution and increasing sinking velocities. Using a historical dataset, this study shows that diatoms were able to maintain their biovolume with increasing stratification in Lake Tahoe over the last decades; however, the diatom community structure changed. Increased stratification and reduced nitrogen to phosphorus ratios selected for small-celled diatoms, particularly within the Cyclotella genus. An empirical model showed that a shift in phytoplankton species composition and cell size was consistent within different depth strata, indicating that altered nutrient concentrations were not responsible for the change. The increase in small-celled species was sufficient to decrease the average diatom size and thus sinking velocity, which strongly influences energy transfer through the food web and carbon cycling. Our results show that within the diverse group of diatoms, small-sized species with a high surface area to volume ratio were able to adapt to a decrease in mixing intensity, supporting the hypotheses that abiotic drivers affect the size structure of planktonic communities and that warmer climate favours small-sized diatom cells.     

Artificial surfaces as a method of studying populations of benthic micro-algae in fresh water

Most work on the ecology of communities of attached algae has involved the investigation of populations which develop on artificial surfaces exposed in the water for a known period of time. The nature and position of the surface and length of time of exposure have been shown to influence the population which develops. No studies have related the structure of these populations to populations on natural surfaces.

Microscope slides which had been exposed in a pond and a stream for two and four weeks were sampled over a period of more than one year, and natural vegetation was sampled at the same time. The populations of attached diatoms on each substrate were analysed.

The diatoms in the pond grew mainly in summer on the slides and in winter on the natural host. In the stream the main growth of the population was over the summer period in all cases. There were twice as many species of diatoms growing on natural hosts as on the slides, and the percentage importance of the species was different. The time of year at which some species grew was different on the slides and the natural vegetation. It was concluded that under these conditions the use of artificial surfaces is not a valid ecological method.     

Microscale imaging sheds light on species-specific strategies for photo-regulation and photo-acclimation of microphytobenthic diatoms

Intertidal microphytobenthic (MPB) biofilms are key sites for coastal primary production, predominantly by pennate diatoms exhibiting photo-regulation via non-photochemical quenching (NPQ) and vertical migration. Movement is the main photo-regulation mechanism of motile (epipelic) diatoms and because they can move from light, they show low-light acclimation features such as low NPQ levels, as compared to non-motile (epipsammic) forms. However, most comparisons of MPB species-specific photo-regulation have used low light acclimated monocultures, not mimicking environmental conditions. Here we used variable chlorophyll fluorescence imaging, fluorescent labelling in sediment cores and scanning electron microscopy to compare the movement and NPQ responses to light of four epipelic diatom species from a natural MPB biofilm. The diatoms exhibited different species-specific photo-regulation features and a large NPQ range, exceeding that reported for epipsammic diatoms. This could allow epipelic species to coexist in compacted light niches of MPB communities. We show that diatom cell orientation within MPB can be modulated by light, where diatoms oriented themselves more perpendicular to the sediment surface under high light vs. more parallel under low light, demonstrating behavioural, photo-regulatory response by varying their light absorption cross-section. This highlights the importance of considering species-specific responses and understanding cell orientation and photo-behaviour in MPB research.     

福建敖江口表层沉积硅藻空间分布特征

为探讨福建敖江口表层沉积硅藻空间分布特征,2019年7月对敖江口进行表层沉积硅藻的采样调查,并研究了硅藻与环境因子的关系。结果表明,从13个站点共检出硅藻114种,隶属于39属。硅藻丰度具有从河口向外海先减少后增加的变化特征。聚类分析表明,主要硅藻属种可划分为淡水种组合带和半咸水-咸水种组合带。典型对应分析（CCA）表明,表层海水温度和盐度是影响硅藻分布的主要环境变量。河口区盐度相对较低,主要分布淡水种双面曲壳藻、优美曲壳藻和颗粒沟链藻;外海区北部盐度相对较高,主要分布咸水种流水双菱藻;外海区南部盐度相对较低,主要分布淡水种优美曲壳藻和颗粒沟链藻;滩涂的沉积物较粗,主要分布优美曲壳藻。此外,河口区和外海区南部可能存在一定的水体污染。     

Biomolecular Self-assembly and its Relevance in Silica Biomineralization

Biomineralization, which means the formation of inorganic materials by biological processes, currently finds increasing research interest. It involves the synthesis of calcium-based minerals such as bones and teeth in vertebrates, and of shells. Silica biomineralization occurs, for example, in diatoms and silica sponges. Usually, biominerals are made up of amorphous compounds or small microcrystalline domains embedded into an amorphous matrix. Nevertheless, they exhibit very regular shapes and, as in the case of diatoms, intricate nanopatterns of amazing beauty. It is, therefore, commonly assumed that biominerals are formed under the structure-directing influence of templates. However, single molecules are by far too small to direct the formation of the observed shapes and patterns. Instead, supramolecular aggregates are shown to be involved in the formation of templating superstructures relevant in biomineralization. Specific biomolecules were identified in both diatoms and silica sponges, which elegantly combine two indispensable functions: on the one hand, the molecules are capable of inducing silica precipitation from precursor compounds. On the other hand, these molecules are capable of self-assembling into larger, structure-directing template aggregates. Such molecules are the silaffins in the case of diatoms and the silicateins in sponges. Long-chain polyamines of similar composition have meanwhile been discovered in both organisms. The present review is especially devoted to the discussion of the self-assembly behavior of these molecules. Physico-chemical studies on a model compound, poly(allylamine), are discussed in detail in order to elucidate the nature of the interactions responsible for self-assembly of long-chain polyamines and the parameters controlling this process. Numerous biomimetic silica synthesis experiments are discussed and evaluated with respect to the observations made on the aforementioned "natural" biomolecules.     

Relationships between local population persistence, local abundance and regional occupancy of species: distribution patterns of diatoms in boreal streams

Aims We have two aims: (1) to examine the relationship between local population persistence, local abundance and regional occupancy of stream diatoms and (2) to characterize the form of the species–occupancy frequency distribution of stream diatoms. Location Boreal streams in Finland. There were three spatial extents: (1) across ecoregions in Finland, (2) within ecoregions in Finland, and (3) within a single drainage system in southern Finland. Methods Diatoms were sampled from stones (epilithon), sediment (epipelon) and aquatic plants (epiphyton) in streams using standardized sampling methods. To assess population persistence, diatom sampling was conducted monthly at four stream sites from June to October. The relationships between local population persistence, local abundance and regional occupancy were examined using correlation analyses. Results There was a significant positive relationship between local persistence and abundance of diatoms in epilithon, epipelon and epiphyton. Furthermore, local abundance and regional occupancy showed a significant positive relationship at multiple spatial extents; that is, across ecoregions, within ecoregions and within a drainage system. The relationships between occupancy and abundance did not differ appreciably among impacted and near pristine‐reference sites. The occupancy–frequency distribution was characterized by a large number of satellite species which occurred at only a few sites, whereas core species that occurred at most sites were virtually absent. Main conclusions The positive relationship between local population persistence and abundance suggested that a high local abundance may prevent local extinction or that high persistence is facilitated by a high local cell density. High local persistence and local abundance may also positively affect the degree of regional occupancy in stream diatoms. The results further showed that anthropogenic effects were probably too weak to bias the relationship between occupancy and abundance, or that the effects have already modified the distribution patterns of stream diatoms. The small number of core species in the species–occupancy frequency distribution suggested that the regional distribution patterns of stream diatoms, or perhaps unicellular microbial organisms in general, may not be fundamentally different from those described previously for multicellular organisms, mainly in terrestrial environments, although average global range sizes may differ sharply between these two broad groups of organisms.     

九寨沟长海中心纲硅藻的分类学研究及报道1个新种

研究报道了采自中国四川九寨沟自然保护区长海的4种中心类硅藻种类, 其中新种1个: 长海小环藻(Cyclotella changhai sp. nov.), 中国新记录种1个: 克里特小环藻(C. cretica)和2种较少报道的种类: 可辨小环藻(C. distinguenda)和辐纹琳达藻(Lindavia radiosa)。通过光学显微镜和扫描电子显微镜对这4个种类形态学的特征进行观察, 并与相似种类进行比较。与长海小环藻相似的种类包括C. comensis Grunow, C. pseudocomensis Scheffler和C. costei Druart & Straub, 主要通过壳面中央区的不同形态进行区分-长海小环藻的中央区近平滑且具有不规则的凹陷。     

红树林下中国新记录的四种硅藻

报道了来自福建和深圳红树林下中国首次记录的4种硅藻,即瓜形桥弯藻Cymbella cucumisA．Schmidt、拟优美舟形藻Mzvicula elegantoides Hustedt、侧偏舟形藻N platyventris Meister和柔弱舟形藻N tenera Hustedt,同时描述了每个种类的细胞形态特征和生态分布特点。作者认为淡水硅藻瓜形桥弯藻C．cucumis在半咸水和海水的环境中也有分布（盐度〉15）,应属于淡水和半咸水种。     

Comprehensive comparisons of three pennate diatoms, Diatoma tenuae, Fragilaria vaucheriae, and Navicula pelliculosa, isolated from summer Arctic reservoirs (Svalbard 79°N), by fine-scale morphology and nuclear 18S ribosomal DNA

Here we report morphological and molecular characteristics of dominant freshwater diatoms in summer Arctic reservoirs of Svalbard (Norway), using four culture isolates, when we collected the samples in the field on 15 August 2005. Analyses of morphology and BLAST searches with 18S rDNA sequences identified them to Diatoma tenue (HYNP006, HYNP013), Navicula pelliculosa (HYNP021), and Fragilaria vaucheriae (HYNP022), respectively. Comparative studies of morphology revealed that the body shapes of the three polar diatoms were nearly identical to the known morphology of each species; however, they were considerably shorter in body length than previously described identical species from other locations. The 18S rDNA sequences of the diatoms were nearly identical to the same species from temperate and other regions. Phylogenetic analysis showed that the polar diatoms each formed a clade with their identical species and genera according to their taxonomic positions. This suggests that the polar diatoms may possess little or no genetic or morphological variation compared to more temperate strains.     

Impact of elevated UV-B radiation on photosynthetic electron transport, primary productivity and carbon allocation in estuarine epipelic diatoms

Epipelic diatoms are important components of microphytobenthic biofilms. Cultures of four diatom species (Amphora coffeaeformis, Cylindrotheca closterium, Navicula perminuta and Nitzschia epithemioides) and assemblages of mixed diatom species collected from an estuary were exposed to elevated levels of ultraviolet-B (UV-B) radiation. Short exposures to UV-B resulted in decreases in photosystem II (PSII) photochemistry, photosynthetic electron transport, photosynthetic carbon assimilation and changes in the pattern of allocation of assimilated carbon into soluble colloidal, extracellular polysaccharides (EPS) and glucan pools. The magnitude of the effects of the UV-B treatments varied between species and was also dependent upon the photosynthetically active photon flux density (PPFD) to which the cells were also exposed, with effects being greater at lower light levels. Both increases in nonphotochemical quenching of excitation energy in the pigment antennae and photodamage to the D1 reaction centres contributed to decreases in PSII photochemistry. All species demonstrated a rapid ability to recover from perturbations of PSII photochemistry, with some species recovering during the UV-B exposure period. Some of the perturbations induced in carbon metabolism were independent of effects on PSII photochemistry and photosynthetic electron transport. Elevated UV-B can significantly inhibit photosynthetic performance, and modify carbon metabolism in epipelic diatoms. However, the ecological effects of UV-B at the community level are difficult to predict as large variations occur between species.