Agave studies in Yucatan,Mexico. II. Nutritional value of the inflorescence peduncle and incipient domestication

Recent ethnobotanical exploration of henequen (Agave fourcroydes) in the Peninsula of Yucatan, Mexico, finds that inflorescence peduncles are used as emergency food and in the preparation of a fermented drink. Bromatological analysis and determination of total carbohydrates were made for the two length classes (ca. 3.30 m and ca. 0.60 m) which are consumed. The analysis of both the cultivated plant and its putative wild ancestor (Agave angustifolia) suggests that utilization of the inflorescence peduncles as food may have been involved in the initial stages of the history of its evolution under artificial selection, because the wild and the cultivated plants have similar palatability. The subsequent agricultural prevalence of annual crop species in the region was possibly responsible for the abandonment of henequen in the local diet. No significant differences are observed between the bromatological and total carbohydrate values of domesticated and wild plants. The preference for small inflorescence peduncles as a vegetable is a consequence of its significantly minor content of raw fiber and its larger content of total carbohydrates. As a fermented drink, longer peduncles are preferred because they provide more substrate material and because fiber can be eliminated by filtering. This agricultural byproduct, almost totally wasted, has potential value as a source of carbohydrates and raw fiber.     

Morphological variation of henequen (Agave fourcroydes, Agavaceae) germplasm and its wild ancestor (A. angustifolia) under uniform growth conditions: diversity and domestication

Extant variants of henequen (Agave fourcroydes Lem.) and wild populations of its putative ancestor A. angustifolia Haw. were grown in the Mexican state of Yucatan for 10 yr under homogeneous conditions. A statistical and numerical analysis of their patterns of morphological variation was performed as part of broader research to provide evidence of its genetic diversity, evolutionary relationships and changes under human selection. A comparison with results of a similar analysis under natural growing conditions was also made. The study indicated the following. (1) Under natural growth conditions, the three putative wild ecotypes are morphologically distinct, but under uniform conditions only populations growing in Tropical subdeciduous forest may be distinguished from the other two, thus indicating the probable existence of only two ecotypes: one growing in Coastal dunes and Tropical subdeciduous forest, and the other growing in Tropical deciduous forest. (2) This last ecotype is the most similar to cultivated variants. Within its populations, the most similar to the cultivated is that known as Chelem White, gathered by artisans for its textile use. (3) The cordage-cultivated Sac Ki and Yaax Ki differ from wild populations in four syndromes of domestication: gigantism, greater fibrosity, less thorniness, and less reproductive capacity. The lower cv of their characteristics compared with those of wild populations suggest less genetic diversity. (4) Kitam Ki is probably a textile-cultivated variant of recent introduction and/or a variant in which the artificial selection process has had different direction and intensity. (5) Improved growth conditions in the botanic garden resulted in a decreased cv, an increase in size and fiber content, and a reduction of thorniness for both wild and cultivated variants. Given that wild populations with desirable characteristics exist and that these characteristics are highly plastic and respond positively to cultivation, then selection and cultivation of populations such as those from Tropical deciduous forest may well have been the path taken by the ancient Maya during henequen domestication.     

Isozymatic variation and phylogenetic relationships between henequen (Agave fourcroydes) and its wild ancestor A. angustifolia (Agavaceae)

Isozymatic variation and phylogenetic relationships among extant henequén (Agave fourcroydes) germplasm and wild populations of its ancestor A. angustifolia in the Yucatan Peninsula in Mexico were analyzed. Analysis of three isozyme systems using starch gel electrophoresis indicated that while A. angustifolia populations have relatively high levels of variation, within each henequén cultivar all individuals were identical. This result corresponds to previous ethnobotanical and morphological analyses, which indicated severe loss of genetic variation of this domesticated plant as a consequence of the promotion by means of asexual propagation of only one cultivar since the middle of the last century. The three extant cultivars of henequén were distinct from each other. Two of them, Sac Ki (SK) and Yaax Ki (YK), could be matched within the progenitor, but Kitam Ki (KK) has a MDH electrophenotype not found in any of the plants growing inside the Yucatan Peninsula, but found in some A. angustifolia plants growing in the Mexican states of Oaxaca and Veracruz. A parsimony analysis of the morphological data indicated two lineages: that of SK and YK, cultivated cordage plants selected for stronger and longer fibers, whose sister group is the Tropical subdeciduous forest ecotype (SF), and that of all the other wild populations, which also included KK, the cultivated textile plants selected for finer fibers and nearly extinct in Yucatan. These results support the hypothesis of the yucatecan origin of SK and YK from the SF ecotype, as well as the hypothesis of a recent introduction of KK to the Yucatan Peninsula in a domestication trend that probably included also Chelem White (its cultivation being abandoned later).     

Patterns of morphological variation,diversity, and domestication of wild and cultivated populations of agave in Yucatan,Mexico

This work presents a statistical and numerical analysis of the patterns of morphological variation of the cultivated variants of henequén (Agave fourcroydes Lem.) presently found in the Mexican state of Yucatan and of the wild populations of A. angustifolia Haw., its putative progenitor. This is the first step in the study of the intrageneric genetic diversity and evolutionary relationships. The study indicated that: (1) There exists a significant discontinuation in morphological variation corresponding to the cultivated variants of traditionally recognized henequén: Sac Ki, Yaax Ki, and Kitam Ki, and to three possible ecotypes of A. angustifolia Haw.: Coastal Dunes, Tropical Deciduous Forest, and Tropical Subdeciduous Forest. (2) Sac Ki and Yaax Ki differ from wild populations in four syndromes of domestication: gigantism, greater fibrosity, less thorniness, and less reproductive capacity. The lower coefficient of variation of their characteristics compared with the wild populations suggests less genetic diversity. This fact, and the disappearance of four out of the seven variants existing early in this century, indicate a dramatic genetic erosion of this crop. (3) Kitam Ki is the cultivated variant more similar to wild ones. Differences with them suggest recent introduction and an artificial selection process with different direction and intensity than the other cultivated variants. (4) A tendency from more to less is observed for characteristics indicating degree of domestication: Sac Ki, Yaax Ki, and Kitam Ki. (5) The differences among the possible wild ecotypes may be associated with the soil conditions and precipitation.     

Wild Kenaf,Hibiscus cannabinus L. (Malvaceae), and related species in Kenya and Tanzania

Kenaf,Hibiscus cannabinus L., occurs as a wild and ruderal plant in Kenya and Tanzania. It is polymorphic, varying in height, growth habit, spininess, flower color, and size of floral parts, capsules, and seeds. It occupies several distinct environmental niches, from low-lying meadows close to swamps and streams to semi-arid grassland /thornbush plains. It is also found in various weedy situations, such as cultivated and fallow fields, and fence- and hedgerows. At least one ecotype appears to be specifically adapted as a weed of cultivated fields. Leaves and stem-tips of this plant are used as food. It is not cultivated for this purpose, although it is sometimes encouraged in fields of maize, cassava, and perhaps other crops. It is apparently not used for fiber by the natives, possibly because fiber of the introduced sisal (Agave sisalana Perr.) is readily available everywhere. Kenaf fiber is produced commercially on a plantation in Tanzania, from a cultivar developed in Guatemala. The occurrence of twelve other taxa of Hibiscus section Furcaria in East Africa is discussed briefly.     

The Ethnobotany and Ethnopharmacology of Wild Tomatillos, Physalis longifolia Nutt., and Related Physalis Species: A Review

The Ethnobotany and Ethnopharmacology of Wild Tomatillos, Physalis longifolia Nutt., and Related Physalis Species: A Review. The wild tomatillo, Physalis longifolia Nutt., and related species have been important wild-harvested foods and medicinal plants. This paper reviews their traditional use as food and medicine; it also discusses taxonomic difficulties and provides information on recent medicinal chemistry discoveries within this and related species. Subtle morphological differences recognized by taxonomists to distinguish this species from closely related taxa can be confusing to botanists and ethnobotanists, and many of these differences are not considered to be important by indigenous people. Therefore, the food and medicinal uses reported here include information for P. longifolia, as well as uses for several related taxa found north of Mexico. The importance of wild Physalis species as food is reported by many tribes, and its long history of use is evidenced by frequent discovery in archaeological sites. These plants may have been cultivated, or ??tended,?? by Pueblo farmers and other tribes. The importance of this plant as medicine is made evident through its historical ethnobotanical use, information in recent literature on Physalis species pharmacology, and our Native Medicinal Plant Research Program??s recent discovery of 14 new natural products, some of which have potent anti-cancer activity.     

Morphological variation,management and domestication of ‘maguey alto’ (<Emphasis Type="Italic">Agave inaequidens</Emphasis>) and ‘maguey manso’ (<Emphasis Type="Italic">A. hookeri</Emphasis>) in Michoacán,México

Background

Agave inaequidens and A. hookeri are anciently used species for producing the fermented beverage ‘pulque’, food and fiber in central Mexico. A. inaequidens is wild and cultivated and A. hookeri only cultivated, A. inaequidens being its putative wild relative. We analysed purposes and mechanisms of artificial selection and phenotypic divergences between wild and managed populations of A. inaequidens and between them and A. hookeri, hypothesizing phenotypic divergence between wild and domesticated populations of A. inaequidens in characters associated to domestication, and that A. hookeri would be phenotypically similar to cultivated A. inaequidens.

Methods

We studied five wild and five cultivated populations of A. inaequidens, and three cultivated populations of A. hookeri. We interviewed agave managers documenting mechanisms of artificial selection, and measured 25 morphological characters. Morphological similarity and differentiation among plants and populations were analysed through multivariate methods and ANOVAs.

Results

People recognized 2–8 variants of A. inaequidens; for cultivation they select young plants collected in wild areas recognized as producing the best quality mescal agaves. Also, they collect seeds of the largest and most vigorous plants, sowing seeds in plant beds and then transplanting the most vigorous plantlets into plantations. Multivariate methods classified separately the wild and cultivated populations of A. inaequidens and these from A. hookeri, mainly because of characters related with plant and teeth size. The cultivated plants of A. inaequidens are significantly bigger with larger teeth than wild plants. A. hookeri are also significatly bigger plants with larger leaves but lower teeth density and size than A. inaequidens. Some cultivated plants of A. inaequidens were classified as A. hookeri, and nearly 10% of A. hookeri as cultivated A. inaequidens. Wild and cultivated populations of A. inaequidens differed in 13 characters, whereas A. hookeri differed in 23 characters with wild populations and only in 6 characters with cultivated populations of A. inaequidens.

Conclusions

Divergence between wild and cultivated populations of A. inaequidens reflect artificial selection. A. hookeri is similar to the cultivated A. inaequidens, which supports the hypothesis that A. hookeri could be the extreme of a domestication gradient of a species complex.

     

Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers

Retrotransposon segments were characterized and inter-retrotransposon amplified polymorphism (IRAP) markers developed for cultivated flax (Linum usitatissimum L.) and the Linum genus. Over 75 distinct long terminal repeat retrotransposon segments were cloned, the first set for Linum, and specific primers designed for them. IRAP was then used to evaluate genetic diversity among 708 accessions of cultivated flax comprising 143 landraces, 387 varieties, and 178 breeding lines. These included both traditional and modern, oil (86), fiber (351), and combined-use (271) accessions, originating from 36 countries, and 10 wild Linum species. The set of 10 most polymorphic primers yielded 141 reproducible informative data points per accession, with 52% polymorphism and a 0.34 Shannon diversity index. The maximal genetic diversity was detected among wild Linum species (100% IRAP polymorphism and 0.57 Jaccard similarity), while diversity within cultivated germplasm decreased from landraces (58%, 0.63) to breeding lines (48%, 0.85) and cultivars (50%, 0.81). Application of Bayesian methods for clustering resulted in the robust identification of 20 clusters of accessions, which were unstratified according to origin or user type. This indicates an overlap in genetic diversity despite disruptive selection for fiber versus oil types. Nevertheless, eight clusters contained high proportions (70?C100%) of commercial cultivars, whereas two clusters were rich (60%) in landraces. These findings provide a basis for better flax germplasm management, core collection establishment, and exploration of diversity in breeding, as well as for exploration of the role of retrotransposons in flax genome dynamics.     

Fiber properties of several species of agavaceae from the Southwestern United States and Northern Mexico

Hard fibers are tissues obtained by decorticating leaves of various monocots, including sisal and abaca. These fibers have traditionally been used in cordage applications (rope, burlap, etc.), but they are also pulped and used in the paper industry for making specialty papers including currency, tea bags, and other products requiring high tensile strength. We examined fiber properties of several genera of Agavaceae from the southwestern United States and northern Mexico to determine their potential for paper making. Leaf samples of species ofAgave, Dasylirion, Hesperaloe, Nolina, and Yucca were macerated and fiber cell length, width, and wall thickness were measured. Several species ofHesperaloe andYucca have fibers that are as long or longer (>3 mm) and narrower (<20 µ) than those of sisal. Species ofAgave, Dasylirion, and,Nolina have shorter fibers (mostly 1.5 mm). Species ofHesperaloe andYucca would appear to be most suitable for paper making.     

Genetic diversity,core collection and breeding history of Pleurotus ostreatus in China

Pleurotus ostreatus is one of the most widespread and favourably cultivated mushrooms in China. The cultivated strains of this species have been frequently exchanged domestically and internationally, but no detailed breeding history has been documented. The frequent domestic and international exchange of strains combined with a non-detailed historical documentation of breeding might have led to confusion about strain names and genetic background. In this study, 91 strains of P. ostreatus, including 57 cultivated and 34 wild strains, were analysed using 21 simple sequence repeat markers developed from the genomic sequence of “P. cf. floridanus”. Among the cultivated strains, 46 were found to possess different allelic patterns. The remaining 11 strains were clustered into five groups, each with their own private alleles, suggesting that 10.5% (6/57) of the cultivated strains were previously labelled with improper names. Our analyses indicate that wild strains harbored greater genetic diversity than the cultivated strains. With regard to the cultivation history of P. ostreatus, the cultivated strains in China have three sources: direct introduction from Europe, domestication from wild strains from China, or hybridisation of the European and Chinese strains. Furthermore, we propose a core collection of P. ostreatus with 34 strains, including 13 wild and 21 cultivated strains. The allele retention proportion of the core collection for the entire collection was 100%.     

Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig

Since being domesticated about 10,000–12,000 years ago, domestic pigs (Sus scrofa domesticus) have been selected for traits of economic importance, in particular large body size. However, Yucatan miniature pigs have been selected for small body size to withstand high temperature environment and for laboratory use. This renders the Yucatan miniature pig a valuable model for understanding the evolution of body size. We investigate the genetic signature for selection of body size in the Yucatan miniature pig. Phylogenetic distance of Yucatan miniature pig was compared to other large swine breeds (Yorkshire, Landrace, Duroc and wild boar). By estimating the XP-EHH statistic using re-sequencing data derived from 70 pigs, we were able to unravel the signatures of selection of body size. We found that both selections at the level of organism, and at the cellular level have occurred. Selection at the higher levels include feed intake, regulation of body weight and increase in mass while selection at the molecular level includes cell cycle and cell proliferation. Positively selected genes probed by XP-EHH may provide insight into the docile character and innate immunity as well as body size of Yucatan miniature pig.     

A cultivated poppy (Papaver sp.) invades wild habitats of Papaver fauriei in the mountain area of Rishiri Island, Japan

Many tiny yellow poppies are grown in the town area of Rishiri Island, Japan. Because the phenotype of this cultivated poppy is similar to that of Papaver fauriei, which is endemic to Mt. Rishiri, Rishiri Island, residents on the island call the cultivated poppy “P. fauriei” although the origin of the cultivated poppy is uncertain. To estimate the origin of the cultivated poppy, its internal transcribed spacer (ITS) sequence was compared with those found in the Far East wild poppies P. fauriei, P. alboroseum, P. miyabeanum and P. nudicaule. Although the ITS sequence of the cultivated poppy was not identical to those found in the wild species, it was most similar to that of P. miyabeanum, indicating that the cultivated poppy is not P. fauriei. However, cultivated poppy seeds have been sown several times over a period of at least 20 years in wild P. fauriei habitats on Mt. Rishiri in the hope of aiding the recovery of P. fauriei populations in wild habitats. Poppy plants in the wild habitats where such seeds have been sown showed the same ITS sequences as those of the cultivated poppy, indicating that the cultivated poppy is established in these wild habitats. This is a case of a nonindigenous species being introduced to wild habitats through human actions.     

Comparative development of fiber in wild and cultivated cotton

SUMMARY One of the most striking examples of plant hairs is the single-celled epidermal seed trichome of cultivated cotton. The developmental morphology of these commercial "fibers" has been well-characterized in Gossypium hirsutum , but little is known about the pattern and tempo of fiber development in wild Gossypium species, all of which have short, agronomically inferior fiber. To identify developmental differences that account for variation in fiber length, and to place these differences in a phylogenetic context, we conducted SEM studies of ovules at and near the time of flowering, and generated growth curves for cultivated and wild diploid and tetraploid species. Trichome initiation was found to be similar in all taxa, with few notable differences in trichome density or early growth. Developmental profiles of the fibers of most wild species are similar, with fiber elongation terminating at about two weeks post-anthesis. In contrast, growth is extended to three weeks in the A- and F-genome diploids. This prolonged elongation period is diagnosed as a key evolutionary event in the origin of long fiber. A second evolutionary innovation is that absolute growth rate is higher in species with long fibers. Domestication of species is associated with a further prolongation of elongation at both the diploid and allopolyploid levels, suggesting the effects of parallel artificial selection. Comparative analysis of fiber growth curves lends developmental support to previous quantitative genetic suggestions that genes for fiber "improvement" in tetraploid cotton were contributed by the agronomically inferior D-genome diploid parent.     

The Population Genetics of Cultivation: Domestication of a Traditional Chinese Medicine,Scrophularia ningpoensis Hemsl. (Scrophulariaceae)

Background

Domestic cultivation of medicinal plants is an important strategy for protecting these species from over harvesting. Some species of medicinal plants have been brought into cultivation for more than hundreds years. Concerns about severe loss of genetic diversity and sustainable cultivation can potentially limit future use of these valuable plants. Genetic studies with comprehensive sampling of multiple medicinal species by molecular markers will allow for assessment and management of these species. Here we examine the population genetic consequences of cultivation and domestication in Scrophularia ningpoensis Hemsl. We used chloroplast DNA and genomic AFLP markers to clarify not only the effects of domestication on genetic diversity, but also determine the geographic origins of cultivars and their genetic divergence from native populations. These results will allow both better management of cultivated populations, but also provide insights for crop improvement.

Results

Twenty-one cpDNA haplotypes of S. ningpoensis were identified. Wild populations contain all haplotypes, whereas only three haplotypes were found in cultivated populations with wild populations having twice the haplotype diversity of cultivated populations. Genetic differentiation between cultivated populations and wild populations was significant. Genomic AFLP markers revealed similar genetic diversity patterns. Furthermore, Structure analysis grouped all wild populations into two gene pools; two of which shared the same gene pool with cultivated S. ningpoensis. The result of Neighbor-Joining analysis was consistent with the structure analysis. In principal coordinate analysis, three cultivated populations from Zhejiang Province grouped together and were separated from other cultivated populations.

Conclusions

These results suggest that cultivated S. ningpoensis has experienced dramatic loss of genetic diversity under anthropogenic influence. We postulate that strong artificial selection for medicinal quality has resulted in genetic differentiation between cultivated and wild populations. Furthermore, it appears that wild populations in Jiangxi-Hunan area were involved in the origin of cultivated S. ningpoensis.     

Taxonomic implications of the morphological and genetic variation of cultivated and domesticated populations of the <Emphasis Type="Italic">Agave angustifolia</Emphasis> complex (Agavoideae,Asparagaceae) in Oaxaca,Mexico

The Agave angustifolia complex, distributed from Mexico to Costa Rica, comprises four species and five varieties, including three species used for mescal production. The complex is represented in the Mexican state of Oaxaca by two wild taxa, A. angustifolia var. angustifolia and A. angustifolia var. rubescens, the cultivated form A. angustifolia “Espadín” and the partially cultivated species A. rodacantha. The aims of this study were to investigate the morphological and genetic variation of the A. angustifolia complex in the state of Oaxaca and to identify traits useful for taxonomic delimitation. Four wild and three cultivated populations of A. angustifolia from Oaxaca, one population of A. tequilana from Guanajuato and one population of A. angustifolia from Sonora were sampled for morphological, genetic and cytometric analyses. We showed that cultivated populations of A. angustifolia “Espadin,” A. rhodacantha and A. tequilana could be clearly differentiated from wild populations. Furthermore, the domesticated populations of A. angustifolia, known locally as “Espadin,” had a higher ploidy level and lower genetic variation than their related wild populations. The population of A. angustifolia from Sonora could be recognized as a different entity. Populations of A. rhodacantha need to be studied throughout their entire distribution area to further evaluate their taxonomic delimitation.     

Ancient plant use at the site of Yuergou, Xinjiang, China: implications from desiccated and charred plant remains

Archaeobotanical studies were undertaken at the Yuergou site, which is located in the Turpan basin in Xinjiang, China, and which has been dated to around 2300–2400 years b.p. Altogether 21 taxa were identified. Four cereal remains were identified, Triticum aestivum, Hordeum vulgare var. coeleste, Panicum miliaceum and Setaria italica. The first three were probably cultivated while the last one may not have been grown deliberately, but probably grew together with plants of P. miliaceum. A fruit stone of Ziziphus jujuba (Chinese date) was discovered, which showed that this may have been cultivated around the site during that time. Charcoal of Picea sp. was found, from wood which must have been used as fuel by the indigenous people. Fifteen taxa of wild plants were also identified, most of which can be considered as weeds, and which grew near the site. Burs of Xanthium strumarium were discovered. As nearly all of them were broken, the seeds may have been used by the ancient inhabitants. Since most of the cereal remains consisted of chaff, they must represent by-products. Furthermore, grains of Echinochloa crus-galli may also have been exploited as complementary food resources. All the above indicate that both cultivated and wild plants were used for cereals, fuel, or other purposes, and plant resources played important roles in the daily life of the ancient inhabitants of the Yuergou site.     

栽培植物野生近缘种的保护与利用

栽培植物是人类赖以生存和发展的重要物质基础。全球人口与人均需求量的持续增长导致对植物资源的需求与日俱增。栽培植物较低的遗传多样性是限制其产量增长和质量提高的主要因素。栽培植物野生近缘种在自然环境中积累了丰富的遗传变异, 并在应对环境变化的过程中产生了很多新的适应性状, 是栽培植物种质创新和品种改良的重要遗传资源。然而, 栽培植物野生近缘种的存续和自然进化因生境破坏以及全球气候变化等正面临严重威胁, 需要采取有效的措施进行保护。本文总结了国内外对栽培植物野生近缘种进行原生境保护与迁地保护所取得的进展, 并基于我国实际情况提出了栽培植物野生近缘种的保护建议。此外, 本文还对栽培植物野生近缘种利用技术进行了梳理, 探讨了栽培植物野生近缘种遗传资源可持续利用的新思路。最后, 我们以长江流域几种代表性栽培植物为例, 对主要作物类型的保护与利用情况进行了讨论。     

First use of microsatellite markers in a large collection of cultivated and wild accessions of tepary bean (Phaseolus acutifolius A. Gray)

Tepary bean (Phaseolus acutifolius A. Gray) is a dry-land crop species that originated in the deserts of Mexico and the south-western United States and therefore is proposed as a source of drought and salt tolerance for related species and for production in marginal rainfall areas. Few genetic tools have been developed or tested for tepary bean but microsatellites from common bean are an obvious choice for diversity analysis in the crop. The first goal of this study was to validate a set of gene-derived and non-gene simple sequence repeat or microsatellite markers from common bean in tepary bean cultivars and wild relative accessions. The second and more extensive objective of this study was to evaluate the genetic diversity and population structure of the tepary bean accessions to determine if leaf-morphology variants are valid as separate sub-groups of wild tepary beans; if P. parvifolius exist as a separate variants or species; and if cultivated tepary beans originated from one domestication event or several events. Our analysis of 140 tepary bean genotypes showed that a single domestication was likely as the cultivars were most closely related to accessions from Sinaloa and northern Mexico and that diversity was much higher in the wild genotypes compared to the cultivated ones. Other results were that P. parvifolius was classified as a separate species by population structure analysis while the variants P. acutifolius var. acutifolius and var. tenuifolius were admixed and inter-crossed. P. latifolius is not a valid species or variant of P. acutifolius but represents a group of cultivars within tepary bean. This is the first analysis of microsatellite diversity in tepary beans and has implications for breeding and conservation of this crop and its wild relatives.     

Origins and Domestication of Cultivated Banana Inferred from Chloroplast and Nuclear Genes

Background

Cultivated bananas are large, vegetatively-propagated members of the genus Musa. More than 1,000 cultivars are grown worldwide and they are major economic and food resources in numerous developing countries. It has been suggested that cultivated bananas originated from the islands of Southeast Asia (ISEA) and have been developed through complex geodomestication pathways. However, the maternal and parental donors of most cultivars are unknown, and the pattern of nucleotide diversity in domesticated banana has not been fully resolved.

Methodology/Principal Findings

We studied the genetics of 16 cultivated and 18 wild Musa accessions using two single-copy nuclear (granule-bound starch synthase I, GBSS I, also known as Waxy, and alcohol dehydrogenase 1, Adh1) and two chloroplast (maturase K, matK, and the trnL-F gene cluster) genes. The results of phylogenetic analyses showed that all A-genome haplotypes of cultivated bananas were grouped together with those of ISEA subspecies of M. acuminata (A-genome). Similarly, the B- and S-genome haplotypes of cultivated bananas clustered with the wild species M. balbisiana (B-genome) and M. schizocarpa (S-genome), respectively. Notably, it has been shown that distinct haplotypes of each cultivar (A-genome group) were nested together to different ISEA subspecies M. acuminata. Analyses of nucleotide polymorphism in the Waxy and Adh1 genes revealed that, in comparison to the wild relatives, cultivated banana exhibited slightly lower nucleotide diversity both across all sites and specifically at silent sites. However, dramatically reduced nucleotide diversity was found at nonsynonymous sites for cultivated bananas.

Conclusions/Significance

Our study not only confirmed the origin of cultivated banana as arising from multiple intra- and inter-specific hybridization events, but also showed that cultivated banana may have not suffered a severe genetic bottleneck during the domestication process. Importantly, our findings suggested that multiple maternal origins and a reduction in nucleotide diversity at nonsynonymous sites are general attributes of cultivated bananas.     

Structure and inheritance of ribosomal DNA variants in cultivated and wild hop, Humulus lupulus L.

Genetic variation was assessed among cultivated and wild hop, Humulus lupulus, by restriction fragment length polymorphisms (RFLPs) of the ribosomal RNA genes (rDNA). Two rDNA length variants of 10.3 and 9.3 kbp represented by three phenotypes designated A, B and C were detected with XhoI. Restriction-site mapping showed that hop rDNA is structurally similar to those of most higher plants. A high level of homogeneity existed in rDNA repeat lengths among the diverse hop genotypes. Generally, phenotype A was predominant in wild and cultivated European and Asian genotypes; phenotype B in North American cultivars; while phenotype C was present only in native North American hop, providing a potential molecular marker for the identification of this germ plasm. The rDNA data provided genetic evidence for the separation of native and cultivated American genotypes and supports the hypothesis that North American hop cultivars are of hybrid origin from European and native American genotypes. The segregation of rDNA phenotypes in four F₁ families suggests that a single locus with two co-dominant alleles controls genetic variability for rDNA variants in hop.