Analysis of demersal fish assemblages off the Southern Tyrrhenian Sea (central Mediterranean)

Monitoring and management of Mediterranean trawling requires a multispecies and ecosystem-based approach. Over the last 20 years studies on diversity and distribution of fish communities have been carried out by ecologists and applied to different ecosystems. Until now, very little information has been available on the Southern Tyrrhenian Sea. The aim of this work is: to analyse the structure of fish demersal assemblages, on a temporal (10 years) and spatial scale using a multivariate approach; to analyse, across space and time, the pattern of biodiversity by means of univariate indices; to identify areas supporting high values of diversity and evenness by a Geographical Information System (GIS) method. The analysis of 249 hauls from ten trawl surveys carried out between depths of 30 and 750 m in the South Tyrrhenian Sea yielded a total of 164 fish species. Multidimensional scaling ordination showed four groups distributed according to the depth gradient: a coastal group (0–100 m depth), a group in the lower part of the continental shelf (101–200 m), an epibathyal group (201–500 m) and the last one derived from hauls made in the middleslope (501–800 m). There were no differences, between years, protected and unprotected areas and geographical sectors. The whole study area was characterised by diversity values which were quite heterogeneous. The persistence index was generally low. Results could be useful from an ecological point of view and for the management of fishery activities.     

Microbial Diversity at a Hot,Shallow-Sea Hydrothermal Vent in the Southern Tyrrhenian Sea (Italy)

Microbial community thriving at shallow hydrothermal vent named Black Point, close to the Island of Panarea in the Southern Tyrrhenian Sea (Italy), was studied by microscopic, cultural and molecular methods. New strains of Bacillus and Geobacillus were isolated. Members of sulphur-oxidizing bacteria, belonging to the genera Halothiobacillus and Thiomicrospira were demonstrated by both culture-dependent and -independent methods. Genetic diversity of Bacteria was higher than that of Archaea. Bacterial 16S rRNA gene sequences from Black Point showed low levels of similarity with other yet deposited sequences, suggesting that new bacterial phylotypes are present in this site. Dominant populations of Bacteria belonged to uncultured members of Proteobacteria (mainly of the class Gammaproteobacteria), Firmicutes and Acidobacteriaceae. Primary production appeared to be supported by chemosynthetic and photosynthetic bacteria affiliated with members of Gammaproteobacteria. Most of the archaeal sequences matched those of yet-uncultivated Archaea, thus their role at this vent is not well understood.     

Response of water column microbial communities to sudden exposure to deltamethrin in aquatic mesocosms

Sudden exposure of an aquatic system to an insecticide can have significant effects on populations other than susceptible organisms. Although this is intuitively obvious, little is actually known about how such exposure might affect bacterial communities and their relative metabolic activity in ecosystems. Here, we assessed small sub-unit (ssu)-RNA levels in open and shaded 9 m(3) aquatic mesocosms (16 units - 2 x 2 factorial design in quadruplicate) to examine the effects of sudden addition of deltamethrin to the units. When deltamethrin was added, a cascade of bacterial then phytoplankton "blooms" occurred over time. The bacterial bloom, which most likely included organisms from the plastid/cyanobacterial phylogenetic guild, was almost immediate (within hours), whereas the phytoplankton (algal) bloom lagged by about 4 days. This sequential response can be explained by an apparent sudden release of nutrients consequent to arthropod death that triggered a series of responses in the microbial loop. Interestingly, bacterial blooms were noted in both open and shaded mesocosms, whereas the algal bloom was only seen in open units, suggesting that both deltamethrin addition (and presumptive nutrient release) and an adequate light supply was required for the phytoplankton response. Overall, this work shows that microbial activities as reflected by ssu-rRNA levels can respond dramatically via apparently indirect effects following insecticide application.     

Feeding ecology of Mediterranean razorfish Xyrichthys novacula in the Tyrrhenian Sea (Central Mediterranean Sea)

The stomach contents of 196 razorfish ( Xyrichthys novacula ), collected in the Tyrrhenian Sea (Ponza Island, Italy) between July and December 1994, were examined in order to assess the diet and to analyse size-related dietary variation of the species. The diet of X. novacula showed a strict relationship with well-sorted fine sand (SFBC) benthic species, mostly Mollusca and Echinodermata, as pointed out by the analysis at the specific level of the stomach contents. Mollusca Pelecipoda, essentially Acanthocardium tuberculatum and Echinodermata, with Echinocardium cordatum , made up 90% of the volume of prey of X. novacula. Mysidacea and Gastropoda were frequent but volumetrically less important. The study showed that male and female X. novacula were not effectively segregated by trophic dimension in the study area. The niche overlap between males and females in prey composition was pronounced, as evidenced by the significantly high values of Schoener's index with larger males that showed a greater tendency towards predation of large prey. The increment in length (L.I.) in males, despite a decrease in the percentage body weight increment (B.W.I.), could represent the result of a male reproductive feature: the lack of sperm competition allows the males much more energy to devote to growth than do that of the females of this species.     

Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea

The stratified water column of the Black Sea produces a vertical succession of redox zones, stimulating microbial activity at the interfaces. Our study of intact polar membrane lipids (IPLs) in suspended particulate matter and sediments highlights their potential as biomarkers for assessing the taxonomic composition of live microbial biomass. Intact polar membrane lipids in oxic waters above the chemocline represent contributions of bacterial and eukaryotic photosynthetic algae, while anoxygenic phototrophic bacteria and sulfate-reducing bacteria comprise a substantial amount of microbial biomass in deeper suboxic and anoxic layers. Intact polar membrane lipids such as betaine lipids and glycosidic ceramides suggest unspecified anaerobic bacteria in the anoxic zone. Distributions of polar head groups and core lipids show planktonic archaea below the oxic zone; methanotrophic archaea are only a minor fraction of archaeal biomass in the anoxic zone, contrasting previous observations based on the apolar derivatives of archaeal lipids. Sediments contain algal and bacterial IPLs from the water column, but transport to the sediment is selective; bacterial and archaeal IPLs are also produced within the sediments. Intact polar membrane lipid distributions in the Black Sea are stratified in accordance with geochemical profiles and provide information on vertical successions of major microbial groups contributing to suspended biomass. This study vastly extends our knowledge of the distribution of complex microbial lipids in the ocean.     

Distribution and biological features of the common pandora,Pagellus erythrinus (Linnaeus, 1758), in the southern Tyrrhenian Sea (Central Mediterranean)

A synthetic analysis of the distribution, abundance and some biological traits of the common pandora (Pagellus erythrinus) was performed. Data were gathered in 15 experimental bottom trawl surveys carried out off the southern Tyrrhenian Sea from 1994 to 2008. A total of 2,166 P. erythrinus were found in the investigated area, with a preference for the upper continental shelf (10–100 m). The highest persistence was recorded in the trawl-banned areas. The sex ratio Sr = F/(F + M) ranged between 0.60 and 0.96 (overall 0.78). The size at which 50 % of the individuals were mature was 157 and 170 mm total length for females and males, respectively. The length–weight relationship for all individuals was described by the following parameters: a = 0.016 and b = 2.905. Growth was evaluated (sexes combined) by applying length-based methods; up to eight significant modal components were evidenced. The von Bertalanffy growth parameters for the whole population were estimated at L _∞ = 454 mm, K = 0.08 and t ₀ = ?2.57. The present results are in agreement with the information available for the other Mediterranean stocks suggesting common biological features.     

Linking Environmental Forcing and Trophic Supply to Benthic Communities in the Vercelli Seamount Area (Tyrrhenian Sea)

Seamounts and their influence on the surrounding environment are currently being extensively debated but, surprisingly, scant information is available for the Mediterranean area. Furthermore, although the deep Tyrrhenian Sea is characterised by a complex bottom morphology and peculiar hydrodynamic features, which would suggest a variable influence on the benthic domain, few studies have been carried out there, especially for soft-bottom macrofaunal assemblages. In order to fill this gap, the structure of the meio-and macrofaunal assemblages of the Vercelli Seamount and the surrounding deep area (northern Tyrrhenian Sea – western Mediterranean) were studied in relation to environmental features. Sediment was collected with a box-corer from the seamount summit and flanks and at two far-field sites in spring 2009, in order to analyse the metazoan communities, the sediment texture and the sedimentary organic matter. At the summit station, the heterogeneity of the habitat, the shallowness of the site and the higher trophic supply (water column phytopigments and macroalgal detritus, for instance) supported a very rich macrofaunal community, with high abundance, biomass and diversity. In fact, its trophic features resembled those observed in coastal environments next to seagrass meadows. At the flank and far-field stations, sediment heterogeneity and depth especially influenced the meiofaunal distribution. From a trophic point of view, the low content of the valuable sedimentary proteins that was found confirmed the general oligotrophy of the Tyrrhenian Sea, and exerted a limiting influence on the abundance and biomass of the assemblages. In this scenario, the rather refractory sedimentary carbohydrates became a food source for metazoans, which increased their abundance and biomass at the stations where the hydrolytic-enzyme-mediated turnover of carbohydrates was faster, highlighting high lability.     

Seasonal shifts in ice edge phytoplankton blooms in the Barents Sea related to the water column stability

The development of the phytoplankton bloom and its relation to water column stabilisation during the transition from early to high summer (of 1991) in the seasonally ice-covered zone of the Barents Sea were studied from a meridional transect of repeated hydrographic/biological stations. The water column stabilisation is described in detail with the aid of vertical profiles of the Brunt-Väisälä frequency squared (N²). The contributions of seasonal warming and ice melting to stabilisation are elucidated by determining the effects of temperature and salinity on N². The spring bloom in 1991 migrated poleward from June to July by about 400 km, associated with the retreat of the ice edge. The spring bloom culminated with maximum chlorophyll concentrations in the mixed layer about 100–300 km north of the centre of the meltwater lens, at its northern edge, where the ice cover was still substantial. From the distribution of N² it becomes obvious that the bloom starts at the very beginning of stabilisation, which results solely from the release of meltwater. The increase in temperature due to the seasonal warming does not contribute to the onset of vernal blooming; temperature starts to contribute to the stratification later, when the spring bloom has ceased due to the exhaustion of nutrients in the mixed layer. By that time a deep chlorophyll maximum has formed in the seasonal pycnocline, 20–30 m below the base of the mixed layer. The effect of the seasonal ice cover on the mean areal new primary production is discussed.     

Variations in the mussel population of the Dutch Wadden Sea in relation to monitoring of other ecological parameters

The pattern of distribution of intertidal mussel beds is relatively constant over a number of years although their surface area can vary greatly. The abundance of mussels shows much greater fluctuations. In the western part of the Dutch Wadden Sea, west of the Terschelling tidal divide, the amount of mussels on natural beds fluctuated between 1 and 24 million kg fresh weight during the years 1949 to 1988. In the eastern part of the Dutch Wadden Sea the biomass varied between 5.5 and 180 million kg. The influence of the mussels on the ecosystem therefore can be very different between years. When many mussels are present the whole watermass can be filtered every few days. In years with few mussels present the filtering may take one month. It is argued that monitor programmes for a.o. nutrients, chlorophyll and growth rates of benthic organisms are of limited value if there is no indication about the total amount of mussels in the area. Presented at the VI International Wadden Sea Symposium (Biologische Anstalt Helgoland, Wattenmeerstation Sylt, D-2282 List, FRG, 1–4 November 1988)     

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)

Mesophilic Crenarchaeota have recently been thought to be significant contributors to nitrogen (N) and carbon (C) cycling. In this study, we examined the vertical distribution of ammonia-oxidizing Crenarchaeota at offshore site in Southern Tyrrhenian Sea. The median value of the crenachaeal cell to amoA gene ratio was close to one suggesting that virtually all deep-sea Crenarchaeota possess the capacity to oxidize ammonia. Crenarchaea-specific genes, nirK and ureC, for nitrite reductase and urease were identified and their affiliation demonstrated the presence of ‘deep-sea'' clades distinct from ‘shallow'' representatives. Measured deep-sea dark CO₂ fixation estimates were comparable to the median value of photosynthetic biomass production calculated for this area of Tyrrhenian Sea, pointing to the significance of this process in the C cycle of aphotic marine ecosystems. To elucidate the pivotal organisms in this process, we targeted known marine crenarchaeal autotrophy-related genes, coding for acetyl-CoA carboxylase (accA) and 4-hydroxybutyryl-CoA dehydratase (4-hbd). As in case of nirK and ureC, these genes are grouped with deep-sea sequences being distantly related to those retrieved from the epipelagic zone. To pair the molecular data with specific functional attributes we performed [¹⁴C]HCO₃ incorporation experiments followed by analyses of radiolabeled proteins using shotgun proteomics approach. More than 100 oligopeptides were attributed to 40 marine crenarchaeal-specific proteins that are involved in 10 different metabolic processes, including autotrophy. Obtained results provided a clear proof of chemolithoautotrophic physiology of bathypelagic crenarchaeota and indicated that this numerically predominant group of microorganisms facilitate a hitherto unrecognized sink for inorganic C of a global importance.     

Evidence of intense archaeal and bacterial methanotrophic activity in the Black Sea water column

In the northwestern Black Sea, methane oxidation rates reveal that above shallow and deep gas seeps methane is removed from the water column as efficiently as it is at sites located off seeps. Hence, seeps should not have a significant impact on the estimated annual flux of approximately 4.1 x 10(9) mol methane to the atmosphere [W. S. Reeburgh, B. B. Ward, S. C. Wahlen, K. A. Sandbeck, K. A. Kilatrick, and L. J. Kerkhof, Deep-Sea Res. 38(Suppl. 2):S1189-S1210, 1991]. Both the stable carbon isotopic composition of dissolved methane and the microbial community structure analyzed by fluorescent in situ hybridization provide strong evidence that microbially mediated methane oxidation occurs. At the shelf, strong isotope fractionation was observed above high-intensity seeps. This effect was attributed to bacterial type I and II methanotrophs, which on average accounted for 2.5% of the DAPI (4',6'-diamidino-2-phenylindole)-stained cells in the whole oxic water column. At deep sites, in the oxic-anoxic transition zone, strong isotopic fractionation of methane overlapped with an increased abundance of Archaea and Bacteria, indicating that these organisms are involved in the oxidation of methane. In underlying anoxic water, we successfully identified the archaeal methanotrophs ANME-1 and ANME-2, eachof which accounted for 3 to 4% of the total cell counts. ANME-1 and ANME-2 appear as single cells in anoxicwater, compared to the sediment, where they may form cell aggregates with sulfate-reducing bacteria (A. Boetius, K. Ravenschlag, C. J. Schubert, D. Rickert, F. Widdel, A. Giesecke, R. Amann, B. B. J?rgensen, U. Witte, and O. Pfannkuche, Nature 407:623-626, 2000; V. J. Orphan, C. H. House, K.-U. Hinrichs, K. D. McKeegan, and E. F. DeLong, Proc. Natl. Acad. Sci. USA 99:7663-7668, 2002).     

Crustacean diversity in relation to the size of water bodies: some facts and problems

SUMMARY.

• 1 Data on the crustacean faunas of 207 lowland water bodies in Yorkshire, involving 125 species, are discussed in relation to site area. Not unexpectedly, large water bodies generally have the most diverse faunas, but the relationship is not a simple one so far as individual species are concerned. While many show a progressive increase in percentage occurrence from small to large water bodies, the reverse is true for others.
• 2 Chydorid cladocerans, of which twenty-one species were recorded, show an unambiguous preference for large water bodies. While differences in habitat diversity appear insufficient to explain the almost seven-fold difference in chydorid representation between ponds and large water bodies, there are also difficulties in attributing the situation to ease, or difficulty, of dispersal. The strategy of firmly attaching resting eggs to substrata employed by some chydorids is more likely to frustrate than to promote dispersal.
• 3 General habits, ecological preferences and feeding habits of the commonest species are analysed in an attempt to clarify the relation of number of species to size of water body and some paradoxical features of dispersal are noted.
• 4 Extrapolation from the data to very large lakes is shown to be misleading. Numerical data, even for a large number of water bodies, are no substitute for knowledge of the ecological requirements and tolerances of individual species.
• 5 Examples are given of the rapid colonization of newly formed ponds by small crustaceans. The relevance of such observations to the theory of island biogeography and to various ecological problems, and the possibility of experimental work using small crustaceans and small ponds are noted.

     

Norian serpulid and microbial bioconstructions: Implication for the platform evolution in the Lombardy Basin (Southern Alps,Italy)

Summary The development of peculiar margin facies and abundant talus breccias within the Dolomia Principale inner platform is commonly observed in the Lombardy Basin during the Norian. The organisms building these margins are mainly serpulids, benthic microbes, subordinate porostomata and other encrusting forms; typical margin organisms, as sponges or corals, are extremely rare or absent. The build-ups form narrow rims along the borders of tectonic-controlled intraplatform basins. Regional back-stepping and progradation of the margin facies on the talus breccias produced by the erosion of the reef is commonly observed in the uppermost Dolomia Principale depositional system. Widespread occurrence of serpulids and microbial margins in middle-late Norian times is indicative of stressed environmental conditions—fluctuation of salinity and temperature on the inner platform and in the intraplatform basins—controlled by palaeogeographic setting. Physical characteristics allowed the bloom of forms able to develop in a wide range of environmental conditions, such as serpulids. In the Late Norian, major input of fine-grained clastics is recorded; close to the Norian-Rhaetian boundary, carbonate ramps were regionally restored. Locally, small serpulid and microbial bioconstructions still persist in the lowermost part of the shaly succession, even if they are less abundant with respect to the Dolomia Principale. Patch-reefs generally do not build a platform margin, but represent isolated mounds within shaly deposits. These build-ups occur on the edge of former structural highs; the communities survived the environmental change responsible for the siliciclastic input and locally managed to produce mounds during the deposition of the lower part of the upper depositional system (Riva di Solto Shale).     

Distribution and some biological features of Lycodes raridens (Zoarcidae) in the western part of the Bering Sea

Based on a bottom trawl survey, it is shown that in Karaginskii and Olyutorskii bays of the western part of the Bering Sea, Lycodes raridens is a typically elittoral species, since it was recorded at depths of 52–120 m, and the majority of individuals of this species were found in the range of depths 50–100 m. The maximum concentrations of Lycodes raridens were 139 ind./km² or 98 kg/km², whereas the average values of the distribution density of this species were 7.8 ind.km² or 5.4 kg/km². In Karaginskii and Olyutorskii bays, Lycodes raridens is represented by individuals with a length of 16–86 cm, weight of 34–4510 g, at the age of 1+ to 7+, although fish with a length of 30–50 cm, weight of 100–1000 g, and age of 3+–4+ dominate. The data obtained suggest that in the autumn or autumn-winter period, the study species spawns in the western part of the Bering Sea. The dominant food of Lycodes raridens here are amphipods, polychaetes, bivalves, and decapods; by occurrence and the relative content in the stomach (% of weight), amphipods (as a rule, Melita spp.) and bivalves (Yoldia spp. and Macoma sp.) dominate. Lycodes raridens is a benthophage in which, at the early stage of the life cycle, gammarids prevail in food; with growth, its diet becomes more diverse due to bivalves, polychaetes, and decapods.     

Variability of fish larvae assemblages relative to mesoscale features in the deep water region of the southern Gulf of Mexico

Hydrobiologia - In the Gulf of Mexico (GoM), mesoscale features strongly influence hydrographic and circulation patterns, which can favor larval retention and/or transport. Most ichthyoplankton...     

Variability in the taxonomic characters of Black Sea gyrodactylids (Monogenea)

Variability of the haptoral hard parts of four Black Sea Gyrodactylus species (G. alviga Dmitrieva & Gerasev, 2000; G. crenilabri Zaika, 1966; G. flesi Malmberg, 1957; G. sphinx Dmitrieva & Gerasev, 2000) was studied in relation to season, host and geographical variability. A discriminant analysis was carried out on the measurements of 14 characters of the haptor of all four species. The haptoral hard parts of the investigated gyrodactylids decrease in size with an increase in water temperature. It is known that life-span of gyrodactylids is negatively correlated with water temperature and they exhibit peak intensities at low temperature. At the same time, life-span is considered to be a general indicator of a favourable environment. Therefore, high water temperature is not apparently advantageous for gyrodactylids. In the case of low marine salinity, in adapted species the sizes of the haptoral hard parts are larger at lower levels of salinity and vice versa for typical marine species. Lastly, in specimens parasitising the primary host, these features are larger than in those parasitising a secondary host. It is possible to say that, in general, the more favourable the environment for gyrodactylids the larger their haptoral hard parts. Unfavourable environmental conditions reduce the time of embryogenesis, which has a dual effect on gyrodactylids: positive in relation to their reproduction (by increasing the reproduction rate) and negative in relation to their development (by decreasing the size of the haptoral hard parts).