Developmental Regulation of Diacylglycerol Acyltransferase Family Gene Expression in Tung Tree Tissues

Diacylglycerol acyltransferases (DGAT) catalyze the final and rate-limiting step of triacylglycerol (TAG) biosynthesis in eukaryotic organisms. DGAT genes have been identified in numerous organisms. Multiple isoforms of DGAT are present in eukaryotes. We previously cloned DGAT1 and DGAT2 genes of tung tree (Vernicia fordii), whose novel seed TAGs are useful in a wide range of industrial applications. The objective of this study was to understand the developmental regulation of DGAT family gene expression in tung tree. To this end, we first cloned a tung tree gene encoding DGAT3, a putatively soluble form of DGAT that possesses 11 completely conserved amino acid residues shared among 27 DGAT3s from 19 plant species. Unlike DGAT1 and DGAT2 subfamilies, DGAT3 is absent from animals. We then used TaqMan and SYBR Green quantitative real-time PCR, along with northern and western blotting, to study the expression patterns of the three DGAT genes in tung tree tissues. Expression results demonstrate that 1) all three isoforms of DGAT genes are expressed in developing seeds, leaves and flowers; 2) DGAT2 is the major DGAT mRNA in tung seeds, whose expression profile is well-coordinated with the oil profile in developing tung seeds; and 3) DGAT3 is the major form of DGAT mRNA in tung leaves, flowers and immature seeds prior to active tung oil biosynthesis. These results suggest that DGAT2 is probably the major TAG biosynthetic isoform in tung seeds and that DGAT3 gene likely plays a significant role in TAG metabolism in other tissues. Therefore, DGAT2 should be a primary target for tung oil engineering in transgenic organisms.     

Engineering the production of conjugated fatty acids in Arabidopsis thaliana leaves

The seeds of many nondomesticated plant species synthesize oils containing high amounts of a single unusual fatty acid, many of which have potential usage in industry. Despite the identification of enzymes for unusual oxidized fatty acid synthesis, the production of these fatty acids in engineered seeds remains low and is often hampered by their inefficient exclusion from phospholipids. Recent studies have established the feasibility of increasing triacylglycerol content in plant leaves, which provides a novel approach for increasing energy density of biomass crops. Here, we determined whether the fatty acid composition of leaf oil could be engineered to accumulate unusual fatty acids. Eleostearic acid (ESA) is a conjugated fatty acid produced in seeds of the tung tree (Vernicia fordii) and has both industrial and nutritional end‐uses. Arabidopsis thaliana lines with elevated leaf oil were first generated by transforming wild‐type, cgi‐58 or pxa1 mutants (the latter two of which contain mutations disrupting fatty acid breakdown) with the diacylglycerol acyltransferases (DGAT1 or DGAT2) and/or oleosin genes from tung. High‐leaf‐oil plant lines were then transformed with tung FADX, which encodes the fatty acid desaturase/conjugase responsible for ESA synthesis. Analysis of lipids in leaves revealed that ESA was efficiently excluded from phospholipids, and co‐expression of tung FADX and DGAT2 promoted a synergistic increase in leaf oil content and ESA accumulation. Taken together, these results provide a new approach for increasing leaf oil content that is coupled with accumulation of unusual fatty acids. Implications for production of biofuels, bioproducts, and plant–pest interactions are discussed.     

樟树长链脂肪酰基CoA合成酶基因9克隆与表达分析

该研究以樟树转录组数据为基础,筛选克隆了拟南芥AtLACS9同源候选基因CcLACS9,二者序列相似性为75%。相关软件预测CcLACS9享有植物LACS亚家族成员3个特征motifs,且N端含有定位质体信手肽。在Δlacs缺陷型酵母互补测试中,以油酸作为唯一外源脂肪酸、转化了CcLACS9的突变型酵母恢复正常生长,证明CcLACS9具有典型的脂肪酰基CoA合成酶的功能。为探究CcLACS9是否参与了樟树籽油生物合成,进一步研究了其组织表达模式和在种子发育过程中其表达量与籽油累积量之间的关系。实时荧光定量PCR分析显示CcLACS9基因在种仁与花中优势表达,种仁中相对表达量是根中的17.74倍。随机测定了30棵成年樟树成熟期种子千粒重、籽油含量和中链脂肪酸比例等指标。根据仁油含量将测试群体划为高、中、低三个不同品级,并在各品级中挑选3棵单株、逐月关联分析其仁油含量与CcLACS9相对表达量。结果表明:在种仁发育前期,仁油含量和CcLACS9表达量都持续上升且二者呈正相关性,8月份为CcLACS9表达量峰值期; 9月下旬后,仁油含量趋向稳定但CcLACS9表达量仍处于较高水平但呈现下降趋势,二者无明显相关性。LACS亚家族在植物进化中较为保守,同源基因在不同植物中具有相同或相似的功能。该研究结果暗示CcLACS9可能拥有AtLACS9相似的生物学功能,即在樟树种仁油酯合成和累积过程中起重要作用。     

The Homeobox Gene GLABRA2 Affects Seed Oil Content in Arabidopsis

Despite a good understanding of genes involved in oil biosynthesis in seed, the mechanism(s) that controls oil accumulation is still not known. To identify genes that control oil accumulation in seed, we have developed a simple screening method to isolate Arabidopsis seed oil mutants. The method includes an initial screen for seed density followed by a seed oil screen using an automated Nuclear Magnetic Resonance (NMR). Using this method, we isolated ten low oil mutants and one high oil mutant. The high oil mutant, p777, accumulated 8% more oil in seed than did wild type, but it showed no differences in seed size, plant growth or development. The high-oil phenotype is caused by the disruption of the GLABRA2 gene, a previously identified gene that encodes a homeobox protein required for normal trichome and root hair development. Knockout of GLABRA2 did not affect LEAFY COTYLEDON 1 and PICKLE expression in developing embryo. The result indicates that in addition to its known function in trichome and root hair development, GLABRA2 is involved in the control of seed oil accumulation.     

Effects of Shade‐Tree Species and Crop Structure on the Winter Arthropod and Bird Communities in a Jamaican Shade Coffee Plantation1

I examined the effects of two farm management variables, shade‐tree species and crop structure, on the winter (dry season) arthropod and bird communities in a Jamaican shade coffee plantation. Birds and canopy arthropods were more abundant in areas of the plantation shaded by the tree Inga vera than by Pseudalbizia berteroana. The abundance of arthropods (potential pests) on the coffee crop, however, was unaffected by shade‐tree species. Canopy arthropods, particularly psyllids (Homoptera), were especially abundant on Inga in late winter, when it was producing new leaves and nectar‐rich flowers. Insectivorous and nectarivorous birds showed the strongest response to Inga; thus the concentration of birds in Inga may be a response to abundant food. Coffee‐tree arthropod abundance was much lower than in the shade trees and was affected little by farm management variables, although arthropods tended to be more abundant in dense (unpruned) than open (recently pruned) areas of the plantation. Perhaps in response, leaf‐gleaning insectivorous birds were more abundant in dense areas. These results underscore that although some shade coffee plantations may provide habitat for arthropod and bird communities, differences in farm management practices can significantly affect their abundances. Furthermore, this study provides evidence suggesting that bird communities in coffee respond to spatial variation in arthropod availability. I conclude that /. vera is a better shade tree than P. berteroana, but a choice in crop structures is less clear due to changing effects of prune management over time.     

转录组测序揭示油桐脂肪酸的合成途径

油桐是我国重要的木本油料植物,过去对油桐的研究主要集中于栽培和常规育种,与油桐种仁油脂合成相关的分子机理研究还未见报道。本研究采用转录组测序（RNA-Seq）技术,比较了油桐种子油脂合成3个不同时期的转录组,获得了大量差异表达的Unigene序列。通过GO（GeneOntology）分类和代谢途径富集性分析将这些差异表达的Unigene归类于包含脂肪酸生物合成途径在内的128个代谢途径。随后将脂肪酸生物合成途径中的54个Unigene序列在KEGG（KyotoEncyclopediaofGenesandGenomes）数据库中进行比对,获得了14个关键酶的同源蛋白质。本研究通过对编码这些同源蛋白质的基因在油桐种子油脂合成期的表达模式进行分析,以期为油桐油脂合成,尤其是桐酸合成机理的解析提供理论参考,并为进一步的理论研究和油桐的遗传改良提供潜在的基因资源,从而提高油桐的单位面积产量。     

Ecological impacts of invasive African olive (Olea europaea ssp. cuspidata) in Cumberland Plain Woodland,Sydney, Australia

African olive (Olea europaea ssp. cuspidata) is a small evergreen tree which has become highly invasive at a landscape scale in the western Sydney and Hunter Valley regions of New South Wales, Australia. African olive invasion results in the formation of a dense and permanent mid‐canopy in grassy woodland vegetation. We investigated the relationship between African olive and native species establishment, abundance and diversity, using field surveys and a manipulative shading experiment. There were 78% fewer native species beneath African olive canopy in the field compared to uninvaded woodland sites. The shading experiment showed that simulated dense African olive shade levels produced the lowest dry weight for the three native species studied, with simulated canopy edge light providing optimal conditions for the native shrub Bursaria spinosa and African olive. Dense African olive shade levels produced the highest mortality rate for native species; however, African olive was able to maintain an 88% survival rate under dense canopy shade. This study confirms the adaptability of African olive and its capacity to decrease native plant diversity and substantially modify native vegetation at the community level.     

基于油桐种子3个不同发育时期转录组的油脂合成代谢途径分析

油桐是我国重要的木本油料植物, 过去对油桐的研究主要集中于栽培和常规育种, 与油桐种仁油脂合成相关的分子机理研究还未见报道。文章采用RNA-seq技术对油桐种子油脂合成的3个不同时期的转录组进行比较, 获得了大量差异表达的Unigene序列。在此基础上, 通过GO分类和Pathway富集性分析将这些差异表达Unigene归类于128个代谢途径, 其中包含与油脂合成相关的脂肪酸生物合成和甘油磷脂代谢途径。桐酸经脂肪酸生物合成途径合成后通过甘油磷脂代谢途径以桐油的形式贮存。将这两个代谢途径的Unigene序列在KEGG数据库中进行比对, 获得了一些关键酶的同源蛋白质。文章通过对编码这些同源蛋白质的基因在油桐种子油脂合成期的表达模式进行分析, 以期为油桐油脂合成, 尤其是桐酸合成机理的解析提供理论参考, 并为油桐的遗传改良提供潜在的基因资源, 从而提高油桐的单位面积产量。     

Seed Size,Seed Germination,and Seedling Survival of Brazilian Tropical Tree Species Differing in Successional Status1

Seed germination and seedling establishment patterns have been used to classify species as shade tolerant or intolerant. The main objective of this research was to investigate, under controlled conditions, seed germination of species from different successional positions as well as to follow seed germination and seedling survival under natural shade in the field. The species studied were Solarium granuloso‐leprosum, Trema micrantha, Cecropia pachystachya, Croton piptocalyx, Bauhinia forficata subsp. pruinosa. Senna macranthera, Schizolobium parahyba, Piptadenia gonoacantha, Chorisia speciosa, Pseudobombax grandiflorum, Ficus guaranitica, Esenbeckia leiocarpa, Pachystroma longifolium, Myroxylon peruiferum, and Hymenaea courbaril. Field trials were carried out at Santa Genebra Municipal Reserve, Campinas, SP, Brazil, at the forest edge and in the understory. No significant correlations were detected between successional status and seed size or seed water content. Light‐regulated germination was present only in small‐seeded species. In field experiments, most species, including the light‐sensitive ones, were able to germinate under the canopy, where a low red/far‐red ratio predominates. Most species, mainly those of early‐ and intermediate successional positions, presented low seedling survival rates under shade. Myroxylon peruiferum was the most shade tolerant species, while 5. granuloso‐leprosum, C. speciosa, P. gonoacantha, F. guaranitica, T. micrantha, and 5. parahyba were the most shade intolerant. These latter species showed little or no survival under the shade conditions.     

Coupled response of stomatal and mesophyll conductance to light enhances photosynthesis of shade leaves under sunflecks

Light gradients within tree canopies play a major role in the distribution of plant resources that define the photosynthetic capacity of sun and shade leaves. However, the biochemical and diffusional constraints on gas exchange in sun and shade leaves in response to light remain poorly quantified, but critical for predicting canopy carbon and water exchange. To investigate the CO₂ diffusion pathway of sun and shade leaves, leaf gas exchange was coupled with concurrent measurements of carbon isotope discrimination to measure net leaf photosynthesis (A_n), stomatal conductance (g_s) and mesophyll conductance (g_m) in Eucalyptus tereticornis trees grown in climate controlled whole‐tree chambers. Compared to sun leaves, shade leaves had lower A_n, g_m, leaf nitrogen and photosynthetic capacity (A_max) but g_s was similar. When light intensity was temporarily increased for shade leaves to match that of sun leaves, both g_s and g_m increased, and A_n increased to values greater than sun leaves. We show that dynamic physiological responses of shade leaves to altered light environments have implications for up‐scaling leaf level measurements and predicting whole canopy carbon gain. Despite exhibiting reduced photosynthetic capacity, the rapid up‐regulation of g_m with increased light enables shade leaves to respond quickly to sunflecks.     

Plasticity in seedling morphology,biomass allocation and physiology among ten temperate tree species in response to shade is related to shade tolerance and not leaf habit

• Mechanisms of shade tolerance in tree seedlings, and thus growth in shade, may differ by leaf habit and vary with ontogeny following seed germination. To examine early responses of seedlings to shade in relation to morphological, physiological and biomass allocation traits, we compared seedlings of 10 temperate species, varying in their leaf habit (broadleaved versus needle‐leaved) and observed tolerance to shade, when growing in two contrasting light treatments – open (about 20% of full sunlight) and shade (about 5% of full sunlight).
• We analyzed biomass allocation and its response to shade using allometric relationships. We also measured leaf gas exchange rates and leaf N in the two light treatments.
• Compared to the open treatment, shading significantly increased traits typically associated with high relative growth rate (RGR) – leaf area ratio (LAR), specific leaf area (SLA), and allocation of biomass into leaves, and reduced seedling mass and allocation to roots, and net assimilation rate (NAR). Interestingly, RGR was not affected by light treatment, likely because of morphological and physiological adjustments in shaded plants that offset reductions of in situ net assimilation of carbon in shade. Leaf area‐based rates of light‐saturated leaf gas exchange differed among species groups, but not between light treatments, as leaf N concentration increased in concert with increased SLA in shade.
• We found little evidence to support the hypothesis of a increased plasticity of broadleaved species compared to needle‐leaved conifers in response to shade. However, an expectation of higher plasticity in shade‐intolerant species than in shade‐tolerant ones, and in leaf and plant morphology than in biomass allocation was supported across species of contrasting leaf habit.

     

Temperature‐dependent shade avoidance involves the receptor‐like kinase ERECTA

Plants detect the presence of neighbouring vegetation by monitoring changes in the ratio of red (R) to far‐red (FR) wavelengths (R:FR) in ambient light. Reductions in R:FR are perceived by the phytochrome family of plant photoreceptors and initiate a suite of developmental responses termed the shade avoidance syndrome. These include increased elongation growth of stems and petioles, enabling plants to overtop competing vegetation. The majority of shade avoidance experiments are performed at standard laboratory growing temperatures (>20°C). In these conditions, elongation responses to low R:FR are often accompanied by reductions in leaf development and accumulation of plant biomass. Here we investigated shade avoidance responses at a cooler temperature (16°C). In these conditions, Arabidopsis thaliana displays considerable low R:FR‐mediated increases in leaf area, with reduced low R:FR‐mediated petiole elongation and leaf hyponasty responses. In Landsberg erecta, these strikingly different shade avoidance phenotypes are accompanied by increased leaf thickness, increased biomass and an altered metabolite profile. At 16°C, low R:FR treatment results in the accumulation of soluble sugars and metabolites associated with cold acclimation. Analyses of natural genetic variation in shade avoidance responses at 16°C have revealed a regulatory role for the receptor‐like kinase ERECTA.