Diurnal transcriptome landscape of a multi-tissue response to time-restricted feeding in mammals

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Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock

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七项河流附着硅藻指数在东江的适用性评估

综合运用因子分析、聚类分析、箱型图分析等统计方法评估了河流附着硅藻生物指数(Biological Diatom Index,IBD)、硅藻营养化指数(Trophic Diatom Index,TDI)、斯雷德切克指数(Sládecˇek’s Index,SLA)、特定污染敏感指数(Specific Polluosensitivity Index,IPS)、硅藻属指数(Generic Diatom Index,IDG)、戴斯指数(Descy Index,DESCY)和欧盟硅藻指数(European Economic Community Index,CEE)在东江流域河流水质评价中的适用性。结果显示:SLA与IPS,CEE显著相关(P<0.05),CEE与TDI不相关,其余指标间均极显著相关(P<0.01)。SLA与13项水质理化指标均无相关性,TDI与含氯度(Cl)显著负相关,CEE与溶解氧(DO)、电导率(Cond.)、总氮(TN)显著正相关(P<0.05),其余指标与氨氮(NH4-N)、pH不存在线性相关,与五日生化需氧量(BOD5)、高锰酸盐指数(CODKMnO4)、亚硝氮(NO2-N)、硝氮(NO3-N),总磷(TP)具极显著相关性(P<0.01)。13项水质理化指标中主成分负荷贡献大于50%的八项理化参数DO、BOD5、CODKMnO4、TN、NO3-N、NO2-N、TP和SiO2将试验区水质分为四组。IPS、IBD、IDG和CEE与水质物化分类一致性较好。IPS、IBD、IDG和CEE的逐步判别分析(引入P=0.20,剔除P=0.25)显示IPS和CEE都只选出了NO2-N,分类判别的正确率分别为55.6%和48.1%;IBD引入了NO2-N,CODKMnO4和DO 3个解释变量,判别正确率74.1%;IDG引入BOD5和NO3-N两个变量,分组正确率63.0%。硅藻群落聚类显示,IBD和IDG在水质物化分类的箱型图中呈现出明显合理的趋势。以上研究表明IBD和IDG硅藻指数最适合用于东江河流水质生物监测与评价。     

The circadian locomotor rhythm of Hemideina thoracica (Orthoptera; Stenopelmatidae): the circadian clock as a population of interacting oscillators

ABSTRACT. The behaviour of the circadian locomotor rhythm of the New Zealand weta, Hemideina thoracica (White), supports the model that the underlying pacemaker consists of a population of weakly coupled oscillators. Certain patterns of locomotor activity, previously demonstrated almost exclusively in vertebrates, are presented here as evidence for the above hypothesis. They include after-effects of various pre-treatments, rhythm-splitting and spontaneous changes in the rhythm. After-effects, which describe the unstable behaviour of free-running circadian rhythms following particular experimental perturbations, have been observed in Hemideina following single light pulses, constant dim light, and laboratory and natural entrainment. Period changes occurred in the activity rhythm after single light pulses of 8-h and 12-h duration (25 lx). Constant dim light (0.1 lx) increased the free-running period (τ) of the activity rhythm, but the after-effect of constant dim light was either an increase or a decrease in τ. After-effects upon both τ and the active phase length of the activity rhythm were found following non-24-h light entrainment cycles with 8-h and 12-h light phases of 25 lx. Qualitative measurements of these after-effects upon τ are presented which reveal a relationship between both the direction and amount of change in τ, and the difference between entrainment cycle length (T) and pre-entrainment free-running period. The after-effect of natural entrainment was an initial short-period free-run (τ < 24h) lasting 5–10 days, generally followed by a rapid period lengthening to τ= 25–26 h. Support for the population model was provided by spontaneous dampening, recovery, and period changes of the rhythm, together with the disruption of the active phase following critical light perturbations, and rhythm-splitting. These Hemideina results are compared with the simulations of the Coupled Stochastic System of Enright (1980).     

Diurnal fluctuations in chloroplast GSH redox state regulate susceptibility to oxidative stress and cell fate in a bloom‐forming diatom

Diatoms are one of the key phytoplankton groups in the ocean, forming vast oceanic blooms and playing a significant part in global primary production. To shed light on the role of redox metabolism in diatom's acclimation to light–dark transition and its interplay with cell fate regulation, we generated transgenic lines of the diatom Thalassiosira pseudonana that express the redox‐sensitive green fluorescent protein targeted to various subcellular organelles. We detected organelle‐specific redox patterns in response to oxidative stress, indicating compartmentalized antioxidant capacities. Monitoring the GSH redox potential (E_GSH) in the chloroplast over diurnal cycles revealed distinct rhythmic patterns. Intriguingly, in the dark, cells exhibited reduced basal chloroplast E_GSH but higher sensitivity to oxidative stress than cells in the light. This dark‐dependent sensitivity to oxidative stress was a result of a depleted pool of reduced glutathione which accumulated during the light period. Interestingly, reduction in the chloroplast E_GSH was observed in the light phase prior to the transition to darkness, suggesting an anticipatory phase. Rapid chloroplast E_GSH re‐oxidation was observed upon re‐illumination, signifying an induction of an oxidative signaling during transition to light that may regulate downstream metabolic processes. Since light–dark transitions can dictate metabolic capabilities and susceptibility to a range of environmental stress conditions, deepening our understanding of the molecular components mediating the light‐dependent redox signals may provide novel insights into cell fate regulation and its impact on oceanic bloom successions.     

Lack of a circadian rhythm in the ability of the gametocytes of Plasmodium falciparum to infect Anopheles gambiae

Batches of Anopheles gambiae were fed once during the day or once or twice during the night on 12 carriers naturally infected with gametocytes of P. falciparum. No overall difference was noted in the oocyst numbers in batches of mosquitoes fed during the night as compared to the daytime.     

Cell‐wall invertases,key enzymes in the modulation of plant metabolism during defence responses

Most plant–pathogen interactions do not result in pathogenesis because of pre‐formed defensive plant barriers or pathogen‐triggered activation of effective plant immune responses. The mounting of defence reactions is accompanied by a profound modulation of plant metabolism. Common metabolic changes are the repression of photosynthesis, the increase in heterotrophic metabolism and the synthesis of secondary metabolites. This enhanced metabolic activity is accompanied by the reduced export of sucrose or enhanced import of hexoses at the site of infection, which is mediated by an induced activity of cell‐wall invertase (Cw‐Inv). Cw‐Inv cleaves sucrose, the major transport sugar in plants, irreversibly yielding glucose and fructose, which can be taken up by plant cells via hexose transporters. These hexose sugars not only function in metabolism, but also act as signalling molecules. The picture of Cw‐Inv regulation in plant–pathogen interactions has recently been broadened and is discussed in this review. An interesting emerging feature is the link between Cw‐Inv and the circadian clock and new modes of Cw‐Inv regulation at the post‐translational level.     

Wind‐driven thermocline movements affect the colonisation and growth of Achnanthidium minutissimum,a ubiquitous benthic diatom in lakes

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Impaired light detection of the circadian clock in a zebrafish melanoma model

The circadian clock controls the timing of the cell cycle in healthy tissues and clock disruption is known to increase tumourigenesis. Melanoma is one of the most rapidly increasing forms of cancer and the precise molecular circadian changes that occur in a melanoma tumor are unknown. Using a melanoma zebrafish model, we have explored the molecular changes that occur to the circadian clock within tumors. We have found disruptions in melanoma clock gene expression due to a major impairment to the light input pathway, with a parallel loss of light-dependent activation of DNA repair genes. Furthermore, the timing of mitosis in tumors is perturbed, as well as the regulation of certain key cell cycle regulators, such that cells divide arhythmically. The inability to co-ordinate DNA damage repair and cell division is likely to promote further tumourigenesis and accelerate melanoma development.     

Changes in the benthic fauna and flora after application of temephos to a stream on Mt. Tsukuba

A dose of 2 ppm of temephos in emulsifiable formulation was applied to a mountain stream to observe its effects on the zoobenthos and the subsequent changes in benthic algae. Most zoobenthos in the treated region drifted but there were slight differences among taxa. Ephemeroptera and Plecoptera disappeared but some Trichoptera and Diptera survived. Chironomids recolonized earlier than other invertebrates and reached a higher density level than before the treatment. A bloom of benthic algae occurred following the destruction of fauna. The increase in the standing crop of algae was accompanied by an increase in the number of species. Among these, Achnanthes lanceolata, Meridion circulare and Tetraspora gelatinosa were predominant. The end of the bloom began with the recovery of the zoobenthos population.     

Proteomic profiling reveals distinct phases to the restoration of chromatin following DNA replication

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Environmental factors accounting for benthic macroinvertebrate assemblage structure at the sample scale in streams subjected to a gradient of cattle grazing

Macroinvertebrate assemblages were related to environmental factors that were quantified at the sample scale in streams subjected to a gradient of cattle grazing. Environmental factors and macroinvertebrates were concurrently collected so assemblage structure could be directly related to environmental factors and the relative importance of stressors associated with cattle grazing in structuring assemblages could be assessed. Based on multivariate and inferential statistics, measures of physical habitat (% fines and substrate homogeneity) had the strongest relationships with macroinvertebrate assemblage structure. Detrital food variables (coarse benthic and fine benthic organic matter) were also associated with assemblage structure, but the relationships were never as strong as those with physical habitat measures, while autochthonous food variables (chlorophyll a and epilithic biomass) appeared to have no association with assemblage structure. The amount of variation explained in taxa composition and macroinvertebrate metrics is within values reported from studies that have examined macroinvertebrate metric–sediment relationships. The % Coleoptera and % crawlers had consistent relationships with % fines during this study, which suggests they may be useful metrics when sediment is a suspected stressor to macroinvertebrate assemblages in Blue Ridge streams. Findings from this study also demonstrate the importance of quantitative sampling through time when research goals are to identify relationships between macroinvertebrates and environmental factors.     

Assessing the vulnerability of endemic diatom species in Lake Baikal to predicted future climate change: a multivariate approach

Diatoms in Lake Baikal exhibit significant spatial variation, related to prevailing climate, lake morphology and fluvial input into the lake. Here we have assessed the threats to endemic planktonic diatom species (through the development of empirical models), which form a major component of primary production within the lake. Multivariate techniques employed include redundancy analysis (RDA) and Huisman–Olff–Fresco (HOF) models. Our analyses suggest that eight environmental variables were significant in explaining diatom distribution across the lake, and in order of importance these are snow thickness on the ice, water depth, duration of days with white ice, suspended matter in the lake, days of total ice duration, temperature of the water surface in July, concentration of zooplankton and suspended organic matter. Impacts on dominant phytoplankton diatom species are highlighted using t‐value biplots. Predictions of future climate change on Lake Baikal are likely to result in shorter periods of ice cover, decreased snow cover across the lake in spring, increased fluvial input into the lake, and an increase in the intensification of surface water stratification during summer months. All these factors are likely to impact negatively on the slow‐growing, cold‐water endemics such as Aulacoseira baicalensis and Cyclotella minuta, which currently dominate diatom assemblages. Instead, taxa that are only intermittently abundant, at present, in offshore areas (e.g. Stephanodiscus meyerii) are likely to become more frequent. However, given the climatic gradient across the lake, the timing and extent of changes in community structure are likely to vary. Moreover, palaeolimnological records show that Lake Baikal diatom assemblages have been dynamic throughout the Holocene, with both endemic and cosmopolitan species exhibiting periods of dominance. Effects of climate change on the entire lake ecosystem may yet be profound as the structure of the pelagic food web may change from one based on endemic diatom taxa to one dominated by nondiatom picoplankton, and as limnological functioning (e.g. stratification and mixing) affects deepwater oxygen availability, nutrient cycling and trophic linkages.