红毛丹(Nephelium lappaceum L.)生态适应性研究

采用欧氏距离统计方法,对海南18县市与泰国、马来西亚红毛丹主产区的7个主要气候因子间的距离相似程度进行了分析,发现海南岛保亭县是红毛丹最佳气候宜植区。这与海南试种结果完全吻合,通过实地调查、土样采集分析,结合多年观察以及同泰国、马来西亚产区对比分析,初步明确了引种红毛丹的生态环境条件要求。     

温度、抗坏血酸、柠檬酸和氯化钠对采后红毛丹果实几种生理指标与品质的影响

采后红毛丹（品种‘粉红’）果实贮于10℃下时呼吸速率下降、细胞膜透性减小、多酚氧化酶活性（PPO）下降、病害少;4℃下贮藏至第4天时即发生冷害;采后用3％抗坏血酸溶液、2％柠檬酸溶液和1％NaCl处理的红毛丹果实中含糖量和果皮花色素苷含量均不减小,其中以10℃下用化学药品处理的效果最显著。     

Reduced variation around drug-resistant dhfr alleles in African Plasmodium falciparum

We have measured microsatellite diversity at 26 markers around the dhfr gene in pyrimethamine-sensitive and -resistant parasites collected in southeast Africa. Through direct comparison with diversity on sensitive chromosomes we have found significant loss of diversity across a region of 70 kb around the most highly resistant allele which is evidence of a selective sweep attributable to selection through widespread use of pyrimethamine (in combination with sulfadoxine) as treatment for malaria. Retrospective analysis through four years of direct and continuous selection from use of sulfadoxine-pyrimethamine as first-line malaria treatment on a Plasmodium falciparum population in KwaZulu Natal, South Africa, has revealed how recombination significantly narrowed the margins of the selective sweep over time. A deterministic model incorporating selection coefficients measured during the same interval indicates that the transition was toward a state of recombination-selection equilibrium. We compared loss of diversity around the same resistance allele in two populations at either extreme of the range of entomological inoculation rates (EIRs), namely, under one infective bite per year in Mpumalanga, South Africa, and more than one per day in southern Tanzania. EIRs determine effective recombination rates and are expected to profoundly influence the dimensions of the selective sweep. Surprisingly, the dimensions were broadly consistent across both populations. We conclude that despite different recombination rates and contrasting drug selection histories in neighboring countries, the region-wide movement of resistant parasites has played a key role in the establishment of resistance in these populations and the dimensions of the selective sweep are dominated by the influence of high initial starting frequencies.     

How does adaptation sweep through the genome? Insights from long-term selection experiments

A major goal in evolutionary biology is to understand the origins and fates of adaptive mutations. Natural selection may act to increase the frequency of de novo beneficial mutations, or those already present in the population as standing genetic variation. These beneficial mutations may ultimately reach fixation in a population, or they may stop increasing in frequency once a particular phenotypic state has been achieved. It is not yet well understood how different features of population biology, and/or different environmental circumstances affect these adaptive processes. Experimental evolution is a promising technique for studying the dynamics of beneficial alleles, as populations evolving in the laboratory experience natural selection in a replicated, controlled manner. Whole-genome sequencing, regularly obtained over the course of sustained laboratory selection, could potentially reveal insights into the mutational dynamics that most likely occur in natural populations under similar circumstances. To date, only a few evolution experiments for which whole-genome data are available exist. This review describes results from these resequenced laboratory-selected populations, in systems with and without sexual recombination. In asexual systems, adaptation from new mutations can be studied, and results to date suggest that the complete, unimpeded fixation of these mutations is not always observed. In sexual systems, adaptation from standing genetic variation can be studied, and in the admittedly few examples we have, the complete fixation of standing variants is not always observed. To date, the relative frequency of adaptation from new mutations versus standing variation has not been tested using a single experimental system, but recent studies using Caenorhabditis elegans and Saccharomyces cerevisiae suggest that this a realistic future goal.     

Soft Shoulders Ahead: Spurious Signatures of Soft and Partial Selective Sweeps Result from Linked Hard Sweeps

Characterizing the nature of the adaptive process at the genetic level is a central goal for population genetics. In particular, we know little about the sources of adaptive substitution or about the number of adaptive variants currently segregating in nature. Historically, population geneticists have focused attention on the hard-sweep model of adaptation in which a de novo beneficial mutation arises and rapidly fixes in a population. Recently more attention has been given to soft-sweep models, in which alleles that were previously neutral, or nearly so, drift until such a time as the environment shifts and their selection coefficient changes to become beneficial. It remains an active and difficult problem, however, to tease apart the telltale signatures of hard vs. soft sweeps in genomic polymorphism data. Through extensive simulations of hard- and soft-sweep models, here we show that indeed the two might not be separable through the use of simple summary statistics. In particular, it seems that recombination in regions linked to, but distant from, sites of hard sweeps can create patterns of polymorphism that closely mirror what is expected to be found near soft sweeps. We find that a very similar situation arises when using haplotype-based statistics that are aimed at detecting partial or ongoing selective sweeps, such that it is difficult to distinguish the shoulder of a hard sweep from the center of a partial sweep. While knowing the location of the selected site mitigates this problem slightly, we show that stochasticity in signatures of natural selection will frequently cause the signal to reach its zenith far from this site and that this effect is more severe for soft sweeps; thus inferences of the target as well as the mode of positive selection may be inaccurate. In addition, both the time since a sweep ends and biologically realistic levels of allelic gene conversion lead to errors in the classification and identification of selective sweeps. This general problem of “soft shoulders” underscores the difficulty in differentiating soft and partial sweeps from hard-sweep scenarios in molecular population genomics data. The soft-shoulder effect also implies that the more common hard sweeps have been in recent evolutionary history, the more prevalent spurious signatures of soft or partial sweeps may appear in some genome-wide scans.     

Surprising Differences in the Variability of Y Chromosomes in African and Cosmopolitan Populations of Drosophila melanogaster

The nonrecombining Drosophila melanogaster Y chromosome is heterochromatic and has few genes. Despite these limitations, there remains ample opportunity for natural selection to act on the genes that are vital for male fertility and on Y factors that modulate gene expression elsewhere in the genome. Y chromosomes of many organisms have low levels of nucleotide variability, but a formal survey of D. melanogaster Y chromosome variation had yet to be performed. Here we surveyed Y-linked variation in six populations of D. melanogaster spread across the globe. We find surprisingly low levels of variability in African relative to Cosmopolitan (i.e., non-African) populations. While the low levels of Cosmopolitan Y chromosome polymorphism can be explained by the demographic histories of these populations, the staggeringly low polymorphism of African Y chromosomes cannot be explained by demographic history. An explanation that is entirely consistent with the data is that the Y chromosomes of Zimbabwe and Uganda populations have experienced recent selective sweeps. Interestingly, the Zimbabwe and Uganda Y chromosomes differ: in Zimbabwe, a European Y chromosome appears to have swept through the population.     

几种野生悬钩子家化的生物学基础研究

在对中国7个省区悬钩子属（Rubus L.）资源调查的基础上,选出蓬（R.hirsutus Thunb.）、掌叶覆盆子（R.chingii Hu）、山莓（R.corchorifolius L.）和高粱泡（R.lambertianus Ser.)4个野生种进行栽培化研究。本文报道4个种的生长结果习性、物候期、营养需要、花芽分化过程以及繁殖习性,并提出了一系列栽培措施。     

A pooling approach to detect signatures of selective sweeps in genome scans using microsatellites

We have evaluated a pooling approach that can reduce the number of polymerase chain reactions in a screen for selective sweeps by more than an order of magnitude. We show that the complex peak pattern that results from pooling of all samples from a given population is a faithful reflection of the composite pattern of the individual alleles, although with an under‐representation of the larger alleles. Candidate loci for selective sweeps can be identified by visual inspection of the pool patterns. We have also implemented a software tool, which can find suitable microsatellite loci in the vicinity of annotated genes.     

Patterns of neutral diversity under general models of selective sweeps

Two major sources of stochasticity in the dynamics of neutral alleles result from resampling of finite populations (genetic drift) and the random genetic background of nearby selected alleles on which the neutral alleles are found (linked selection). There is now good evidence that linked selection plays an important role in shaping polymorphism levels in a number of species. One of the best-investigated models of linked selection is the recurrent full-sweep model, in which newly arisen selected alleles fix rapidly. However, the bulk of selected alleles that sweep into the population may not be destined for rapid fixation. Here we develop a general model of recurrent selective sweeps in a coalescent framework, one that generalizes the recurrent full-sweep model to the case where selected alleles do not sweep to fixation. We show that in a large population, only the initial rapid increase of a selected allele affects the genealogy at partially linked sites, which under fairly general assumptions are unaffected by the subsequent fate of the selected allele. We also apply the theory to a simple model to investigate the impact of recurrent partial sweeps on levels of neutral diversity and find that for a given reduction in diversity, the impact of recurrent partial sweeps on the frequency spectrum at neutral sites is determined primarily by the frequencies rapidly achieved by the selected alleles. Consequently, recurrent sweeps of selected alleles to low frequencies can have a profound effect on levels of diversity but can leave the frequency spectrum relatively unperturbed. In fact, the limiting coalescent model under a high rate of sweeps to low frequency is identical to the standard neutral model. The general model of selective sweeps we describe goes some way toward providing a more flexible framework to describe genomic patterns of diversity than is currently available.     

同一生境下多年生黑麦草与节节麦的核型比较

对同一生境下多年生黑麦草（Lolium perenn L.）和节节麦（Aegilops squarrosa L.）的根尖细胞染色体作了分析,并从细胞学角度比较了两者的同源性。结果表明：多年生黑麦草的核型公式为：2n=6x=42=24m＋18sm（2SAT）,属于六倍体的＂2B＂型,在第19号染色体上有一对随体,最长与最短染色体的比为2.13,臂比大于2的染色体占全套染色体的30%,核型不对称系数为60.48%;节节麦的核型公式为2n=2x=14=10m＋4sm（2SAT）,属于二倍体的＂2A＂型,在第4号染色体有一对随体,最长与最短染色体长度比为1.49,臂比大于2的染色体占全套染色体的14%,不对称系数为58.2%,表明同一生境下多年生黑麦草比节节麦更为进化,两者在染色体水平上没有亲缘关系。     

Inferring the effects of demography and selection on Drosophila melanogaster populations from a chromosome-wide scan of DNA variation

Identifying regions of the Drosophila melanogaster genome that have been recent targets of positive Darwinian selection will provide evidence for adaptations that have helped this species to colonize temperate habitats. We have begun a search for such genomic regions by analyzing multiple loci (about 250) dispersed across the X chromosome in a putatively ancestral population from East Africa and a derived European population. For both populations we found evidence for past changes in population size. We estimated that a major bottleneck associated with the colonization of Europe occurred about 3,500-16,000 years ago. We also found that while this bottleneck can account for most of the reduction in variation observed in the European sample, there is a deficit of polymorphism in some genomic regions that cannot be explained by demography alone.     

新疆猪毛菜属植物染色体数及核型分析

以5种新疆猪毛菜属植物为材料,常规压片法制片后观察记录染色体数,并进行核型分析。实验结果表明:钠猪毛菜体细胞染色体数2n=18;浆果猪毛菜2n=2x=18=12m 6sm,属2A核型;木本猪毛菜2n=2x=18=16m 2sm,属2A核型;东方猪毛菜2n=4x=36=26m 10sm,属2B核型;长刺猪毛菜2n=4x=36=24m 4sm 8st,属2B核型。猪毛菜属植物的染色体基数为9,东方猪毛菜、长刺猪毛菜为四倍体,其它3种均为二倍体。与Бочанцев基于形态学特征建立的分组系统及各组的演化地位相比,东方猪毛菜属于原始的硬叶猪毛菜组,而本研究表明该种在核型上相对较为进化;其余3种核型地位与所属组的演化地位相符。     

东方蓼的染色体核型分析

目的:对药用植物东方蓼的染色体数目、核型、体积等进行了研究。方法:采用常规制片方法,结合显微摄影对染色体的数目进行统计分析。结果:东方蓼体细胞染色体数目2n=22,相对长度组成2n=22=10M2+12M1;核型公式为K(2n)=2X=22=20m+2M;全体染色体总长19.16μm,长臂总长10.93μm,核型不对称系数(AS.K%)为57.00%,属于"1A"型,全体染色体总体积为20.30μm3。结论:东方蓼体细胞染色体的数目、核型、体积等清晰准确。     

紫苏属植物染色体数目和核型分析

通过对26份紫苏属材料进行染色体数目的观察,并对其1种(包括紫苏和白苏)及2变种材料各一份进行核型分析.结果显示,紫苏属植物染色体数均为2n=40,其核型公式分别为紫苏[P.frutescens(L.)Britton var.frutescens(zi-su)]2n=40=20m(2SAT) 10sm 10st;野生紫苏[P.frutescens var.purpurascens(Hayata)H.W.Li]2n=40=18m 14sm(2SAT) 8st;回回苏[P.frutescens var.crispa(Benth.)Deane ex Bailey]2n=40=10m(2SAT) 14sm 16st;白苏[P.frutescens(L.)Britton var.frutescens(bai-su)]2n=40-24m 12sm(2SAT) 4st.结果表明,紫苏属不同原(变)种植物的染色体数日相同,但在核型上存在一定的差异,其染色体核型为首次报道.