A trait-based approach to assess niche overlap and functional distinctiveness between non-indigenous and native species

Our understanding of the community assembly processes acting on non-indigenous species (NIS), as well as the relationship with native species is limited, especially in marine ecosystems. To overcome this knowledge gap we here develop a trait-based approach based on the functional distinctiveness metric to assess niche overlap between NIS and native species, using high-resolution data on benthic invertebrate communities in the Baltic Sea. Our results show that NIS retain a certain degree of similarity with native species, but display one or a few singular unique traits (e.g., bioturbation ability). Furthermore, we demonstrate that community assembly processes, including both environmental filtering and limiting similarity affect NIS establishment, but that their effects may be highly context dependent, as illustrated by pronounced spatial patterns in distinctiveness. Finally, our trait-based approach provides a generic framework applicable to other areas and organisms, to better understand and address biological invasions.     

A trait-based approach to community assembly: partitioning of species trait values into within- and among-community components

Plant functional traits vary both along environmental gradients and among species occupying similar conditions, creating a challenge for the synthesis of functional and community ecology. We present a trait-based approach that provides an additive decomposition of species' trait values into alpha and beta components: beta values refer to a species' position along a gradient defined by community-level mean trait values; alpha values are the difference between a species' trait values and the mean of co-occurring taxa. In woody plant communities of coastal California, beta trait values for specific leaf area, leaf size, wood density and maximum height all covary strongly, reflecting species distributions across a gradient of soil moisture availability. Alpha values, on the other hand, are generally not significantly correlated, suggesting several independent axes of differentiation within communities. This trait-based framework provides a novel approach to integrate functional ecology and gradient analysis with community ecology and coexistence theory.     

A trait-based approach across the native and invaded range to understand plant invasiveness and community impact

Alien plant species invasiveness and impact on diversity (i.e. species richness and composition) can be driven by the altered competitive interactions experienced by the invader in its invaded range compared to its native range. Trait-based competition effects on invasiveness can be mediated through size-asymmetric competition, i.e. a trait suit of the invader that drives competitive dominance, and through ‘niche differences', i.e. trait differentiation and thus minimized competition between invader and the invaded community. In terms of invasion impact, size-asymmetric competition is expected to result in competitive exclusion of co-occurring subordinate species, whereas ‘niche differences' might result in competitive exclusion of the most functionally similar co-occurring species. Although observational work does not allow the full disentanglement of both trait-based effects, it does allow to verify the occurrence of expected theoretical trait patters. In this study, we explored the trait-based competition effects on invasiveness and diversity impact for Rosa rugosa in both its invaded range in Belgium and its native range in Japan, based on seven functional traits across 100 vegetation plots. Following the predictions for enhanced invasiveness, we found much lower functional overlap between R. rugosa and the co-occurring species in the invaded range compared to the native range. This likely also explains the absence of diversity impact in its native range. Despite the absence of changes in species richness in the invaded range, the invader did strongly impact species composition of invaded communities. This impact occurred through strong shade tolerance responses, suggesting size-asymmetric competition effects and cover loss of co-occurring dominant species, next to exclusion of co-occurring species most functionally similar to the invader; suggesting niche difference effects. In conclusion, this case-study illustrates how exploring functional trait patterns across a species native and invaded range can help in understanding how trait-based competition processes can affect invasiveness and community impact.     

微生物物种多样性、群落构建与功能性状研究进展

微生物主要包括细菌、真菌、古菌、病毒等类群, 是地球上出现时间最早、分布最广泛、个体数量最多, 以及物种和基因多样性十分丰富的生物类群。为了适应各种生境, 微生物衍生出腐生、寄生、共生等多样的生存策略, 在生物地球化学循环、生态系统演替与稳定性、环境修复以及人类健康等方面发挥着重要作用。传统的微生物监测方法限制了我们对微生物多样性的认知; 但是, 近年来高通量测序技术和生物信息学的发展极大推动了微生物多样性的研究进展。本文概述了近年来在微生物多样性分布格局与维持、群落构建以及功能属性多样性的最新进展; 总结分析了细菌、古菌、真菌的多样性纬度分布格局及其驱动因子, 选择、扩散、成种、漂变等过程对细菌、古菌、真菌的群落构建的贡献, 以及细菌和真菌的形态、生理生化、生长繁殖、扩散、基因组等功能性状的多样性; 提出了未来微生物多样性研究的重要领域: 环境宏真菌组研究, 微生物多样性与生态系统多功能性的关系研究, 以及微生物互作网络的生态功能研究。     

Building modern coexistence theory from the ground up: The role of community assembly

Modern coexistence theory (MCT) is one of the leading methods to understand species coexistence. It uses invasion growth rates—the average, per-capita growth rate of a rare species—to identify when and why species coexist. Despite significant advances in dissecting coexistence mechanisms when coexistence occurs, MCT relies on a ‘mutual invasibility’ condition designed for two-species communities but poorly defined for species-rich communities. Here, we review well-known issues with this component of MCT and propose a solution based on recent mathematical advances. We propose a clear framework for expanding MCT to species-rich communities and for understanding invasion resistance as well as coexistence, especially for communities that could not be analysed with MCT so far. Using two data-driven community models from the literature, we illustrate the utility of our framework and highlight the opportunities for bridging the fields of community assembly and species coexistence.     

Species assembly and the evolution of community structure

Summary In this paper I consider the evolutionary and ecological implications of an assembly rule which was derived empirically from studies on a heathland small-mammal community in south-eastern Australia. This rule has been tested successfully against 52 heathland small-mammal assemblages. Here it is shown to hold also for 80 forest assemblages of small mammals spanning a latitudinal range from 27°S to 43°S in south-eastern Australia. The observed forest communities are predicted by the rule and they deviate significantly from random assemblages. I suggest that the unique evolutionary history of the Australian fauna has made these patterns more apparent. The rule is simply stated as: There is a much higher probability that each species entering a community will be drawn from a different functional group (genus or other taxonomically related group of species with similar diets) until each group is represented, before the cycle repeats. A theoretical basis for the rule is proposed which extends the niche compression hypothesis to cover evolutionary time. Evolutionary constraints on adaptations for diet selection are greater than those operating on habitat selection. Successful tests in North America for the granivorous desert rodent guild and the mixed-forest insectivore guild support a wider application of this rule than the Australian communities from which it was derived. A speculative model is proposed in which the mechanisms involved in the operation of this rule shape the evolution of community structure.     

Distribution of functionally distinct native and non-indigenous species within marine urban habitats

Aim

Trait-based approaches are powerful to examine the processes associated with biological invasions. Functional comparison among native and non-indigenous species (NIS) can notably infer whether novel assemblages result from neutral or niche-based assembly rules. Applying such a framework to biofouling communities, our study aimed to elucidate their distributions within two marine urban habitats (namely floating vs. nonfloating habitats).

Location

Southeast Pacific—Central Chilean coastline.

Methods

Here, we examined the distribution of 12 functional traits in fouling communities established on settlement plates, after 3 and 13 months of deployment in the two habitats and across ports in Central Chile. Based upon previously described differences of assemblages and NIS contribution across habitats, we hypothesized that nonindigenous, cryptogenic and native taxon pools would be functionally distinct (and trait biased), and that functional diversity and structure would vary across habitats and successional stages.

Results

Our results show, as anticipated, that nonindigenous (13 taxa), cryptogenic (12) and native (18) taxon pools are functionally distinct, though overlapping in the trait space. Non-indigenous species are rather related to colonizing traits, while native species are more related to competitive traits. Only one widespread NIS was functionally similar to the late successional and most competitive native species, including taxa elsewhere invasives. Despite differences in taxonomic composition between habitats, we did not observe functional differences between them. In contrast, temporal variations across colonization stages were detected along with an increased contribution in large and long-lived taxa, together with site-specific trajectories.

Main Conclusions

We conclude that the functional distinctness among nonindigenous, cryptogenic and native taxa occupying artificial habitats in ports reflects niche-based processes. Site-specific trajectories indicate that scale-dependent assembly processes, such as dispersal and species interactions, are at play.     

Occurrence and dominance of six Pacific Northwest conifer species

Questions: Can probability of occurrence and dominance be accurately estimated for six important conifer species with varying range sizes? Does range size impact the accuracy of species probability of occurrence models? Is species predicted probability of occurrence significantly related to observed dominance? Location: Pacific Northwest region, North America (60°–40°N, 140°–110°W). Methods: This study develops near range‐wide predictive distribution maps for six important conifer species (Pseudotsuga menziesii, Tsuga heterophylla, Pinus contorta, Thuja plicata, Larix occidentalis, and Picea glauca) using forest inventory data collected across the United States and Canada. Species model accuracies are compared with range size using a rank scoring system. A suite of climate and topographic predictor variables are used to investigate environmental constraints that limit species range and quantify relationships between species predicted probability of occurrence and dominance at both plot and landscape scales. Results: Evaluation statistics revealed significant and accurate probability of occurrence models were developed for all six species. Based on ranked evaluation statistics, Tsuga heterophylla had highest overall model accuracy (statistic rank score=5) and Pinus contorta the lowest (statistic rank score=17). Across species, ranked evaluation statistics also revealed a pattern of decreasing model accuracy with increasing range size. At plot level, correlations between dominance and probability of occurrence were weakly positive for all species with only half of the species having statistically significant correlations. Pseudotsuga menziesii had the highest correlation (r=0.36, P<0.001) and Thuja plicata lowest (r=0.038, P=0.799). At the 50‐km scale, correlations between dominance and probability of occurrence improved for all species except Pinus contorta. Pseudotsuga menziesii displayed the highest correlation (r=0.68, P<0.001) and Thuja plicata the lowest (r=0.07, P>0.709). Conclusions: Species probability of occurrence model accuracy decreased with increasing range size. The strength and significance of correlations between probability of occurrence and dominance varied considerably by species and across spatial scales. Apart from Pseudotsuga menziesii and L. occidentalis, the results suggest that probability of occurrence is not a consistently reliable surrogate for species dominance in Pacific Northwest forests. We demonstrate how the degree of correlation between species occurrence and dominance can be used as an indicator of how well predictions of occurrence characterize the optimal niche of a species.     

Advances, challenges and a developing synthesis of ecological community assembly theory

Ecological approaches to community assembly have emphasized the interplay between neutral processes, niche-based environmental filtering and niche-based species sorting in an interactive milieu. Recently, progress has been made in terms of aligning our vocabulary with conceptual advances, assessing how trait-based community functional parameters differ from neutral expectation and assessing how traits vary along environmental gradients. Experiments have confirmed the influence of these processes on assembly and have addressed the role of dispersal in shaping local assemblages. Community phylogenetics has forged common ground between ecologists and biogeographers, but it is not a proxy for trait-based approaches. Community assembly theory is in need of a comparative synthesis that addresses how the relative importance of niche and neutral processes varies among taxa, along environmental gradients, and across scales. Towards that goal, we suggest a set of traits that probably confer increasing community neutrality and regionality and review the influences of stress, disturbance and scale on the importance of niche assembly. We advocate increasing the complexity of experiments in order to assess the relative importance of multiple processes. As an example, we provide evidence that dispersal, niche processes and trait interdependencies have about equal influence on trait-based assembly in an experimental grassland.     

A simple approach to optimal control of invasive species

The problem of invasive species and their control is one of the most pressing applied issues in ecology today. We developed simple approaches based on linear programming for determining the optimal removal strategies of different stage or age classes for control of invasive species that are still in a density-independent phase of growth. We illustrate the application of this method to the specific example of invasive Spartina alterniflora in Willapa Bay, WA. For all such systems, linear programming shows in general that the optimal strategy in any time step is to prioritize removal of a single age or stage class. The optimal strategy adjusts which class is the focus of control through time and can be much more cost effective than prioritizing removal of the same stage class each year.     

An evaluation of a GARP model as an approach to predicting the spatial distribution of non-vagile invertebrate species

One of the primary goals of any systematic, taxonomic or biodiversity study is the characterization of species distributions. While museum collection data are important for ascertaining distributional ranges, they are often biased or incomplete. The Genetic Algorithm for Rule-set Prediction (GARP) is an ecological niche modelling method based on a genetic algorithm that has been argued to provide an accurate assessment of the spatial distribution of organisms that have dispersal capabilities. The primary objective of this study is to evaluate the accuracy of a GARP model to predict the spatial distribution of a non-invasive, non-vagile invertebrate whose full distributional range was unknown. A GARP predictive model based on seven environmental parameters and 42 locations known from historical museum records for species of the trapdoor spider genus Promyrmekiaphila was produced and subsequently used as a guide for ground truthing the model. The GARP model was neither a significant nor an accurate predictor of spider localities and was outperformed by more simplistic BIOCLIM and GLM models. The isolated nature of Promyrmekiaphila populations mandates that environmental layers and their respective resolutions are carefully chosen for model production. Our results strongly indicate that, for modelling the spatial distribution of low vagility organisms, one should employ a modelling method whose results are more conducive to interpretation than models produced by a 'black box' algorithm such as GARP.     

普生轮藻浸提液对两种淡水藻类的化感抑制作用及其数学模型

利用大型水生植物的化感作用抑制水华藻类是水域生态学研究的热点课题之一。探讨了不同浓度普生轮藻浸提液对产毒铜绿微囊藻和斜生栅藻(单纯以及混合藻类)的抑制作用,并根据实验过程中得到的数据和数据特征,在传统的Logistic模型和Lotka-Volterra模型基础上,通过微元法建立了普生轮藻浸提液对单纯产毒铜绿微囊藻、单纯斜生栅藻抑制的数学模型以及两藻混合时抑制的数学模型。结果表明,(1)普生轮藻浸提液无论对单独的毒性铜绿微囊藻或斜生栅藻还是共生状态的毒性铜绿微囊藻和斜生栅藻均有很强抑制作用,且对毒性铜绿微囊藻的抑制作用要显著高于对斜生栅藻;(2)所建立的抑藻模型可有效表征和预测在一定范围内的产毒铜绿微囊藻、斜生栅藻及其混合藻在普生轮藻浸提液胁迫下藻密度随时间变化的规律;通过这些模型可方便地计算出实验期间任何时间节点上普生轮藻浸提液的半抑制浓度(EC50)、最小有效浓度(MIC)等指标的预测值、混合藻在小生境中相对稳定时的预测值等等。该研究可为实际抑藻的方案制定和实施提供有价值的数据支撑和参考,具有一定的理论与应用意义。     

叶蜂总科生物地理研究IV东亚区特有属的分布式样及迁移路线(膜翅目)

本文分析归纳了东亚叶蜂总科特有属的分布式样及迁移路线。东亚区分布的１７９个叶蜂总科特有属可归纳为１个主要特化中心：川滇缅高原;５个小型次级特化中心：喜马拉雅中段小中心、浙闽山地小中心、秦巴山地小中心、燕山山地小中心和长白山地小中心;４条主要迁移演化路线：从主要中心沿喜马拉雅山脉走廊向西发展的西线,从主要中心沿缅－马走廊向南发展的南线,从主要中心沿南岭走廊向东发展的东线,从主要中心向北沿第二阶梯东缘走廊（大娄山－伏牛山－太行山－燕山）及西部走廊（第一阶梯东缘走廊）发展的北线,其中北线因四川盆地隔离可分为东西两支,但东西两支从秦岭山脉始重新部分融合;一个中心区域类型和３８种分布式样。     

人为干扰对传粉昆虫群落物种多样性及其优势类群生态位的影响

物种多样性是群落功能复杂性和稳定性的重要量度指标,不同干扰强度下物种多样性和生态位特征不同,人为干扰对传粉群落的影响可以通过群落结构和物种多样性的变化直接表现出来。在巩义市选取24个采样点,3种景观类型(农田、灌丛、林地)进行取样,共捕获传粉昆虫18576头,分属于14目,147科,双翅目、膜翅目、鞘翅目、鳞翅目、半翅目与缨翅目6个传粉功能群。为了解研究区人为干扰对传粉昆虫类群传粉类群及其生态位的影响,本研究选取双翅目、膜翅目、鞘翅目3类主要传粉昆虫作为研究对象,在景观类型分类与实际情况的基础上,依据人为干扰指数赋值表和干扰强度计算公式,分析不同干扰强度下传粉昆虫优势种群生态位特征情况,结果表明:各传粉类群在不同的干扰条件下物种多样性不同;作为优势类群的蠓科、胡蜂科,生态位宽度和生态位重叠均均值高于其他几个类群,且中度干扰强度下值最大,但其生态宽度值与生态重叠值之间没有明显的相关关系。     

马尾松纯林虫生真菌群落组成及优势种生态位研究

对麻姑山马尾松纯林的虫生真菌群落进行了调查研究,共发现了3科6属14种。该林区虫生真菌群落的主要成分是环链棒束孢、球孢白僵菌和粉棒束孢,虫生菌种类较少,较为单一。对3种优势虫生真菌环链棒束孢、球孢白僵菌和粉棒束孢的营养、时间及营养-时间二维生态位进行了分析。结果表明,环链棒束孢与粉棒束孢的营养生态位重叠度最大,与球孢白僵菌时间生态重叠度最大。而球孢白僵菌的营养生态位宽度、时间生态位宽度和营养-时间二维生态位宽度都为最大。球孢白僵菌在自然界中发生时间长,分布范围广,寄主昆虫丰富,生存能力强的实际情况也支持这一分析结果。     

关帝山亚高山灌丛草甸群落优势种群的生态位研究

采用定量分析方法对关帝山亚高山草甸灌丛群落中的13个主要种群进行了生态位研究。首先运用TWINSPAN把33个样方分为5个群落类型,作为5个综合资源位,用Levins、Shannon—wiener生态位宽度公式和Petraitis生态位特定重叠指数公式测定群落中主要种群生态位宽度和生态位重叠,并分析各种群生态位的生态学意义。结果表明,种群生态位宽度越大,对环境的适应能力越强,对资源的利用能力也越强;生态位重叠越大,种群间的生态相似性越大,利用资源的相似性程度越高;生态位宽的种群对生态位窄的种群可能有较高的重叠值,反之则较低。