High-resolution single-shot phase-shifting interference microscopy using deep neural network for quantitative phase imaging of biological samples

White light phase-shifting interference microscopy (WL-PSIM) is a prominent technique for high-resolution quantitative phase imaging (QPI) of industrial and biological specimens. However, multiple interferograms with accurate phase-shifts are essentially required in WL-PSIM for measuring the accurate phase of the object. Here, we present single-shot phase-shifting interferometric techniques for accurate phase measurement using filtered white light (520±36 nm) phase-shifting interference microscopy (F-WL-PSIM) and deep neural network (DNN). The methods are incorporated by training the DNN to generate (a) four phase-shifted frames and (b) direct phase from a single interferogram. The training of network is performed on two different samples i.e., optical waveguide and MG63 osteosarcoma cells. Further, performance of F-WL-PSIM+DNN framework is validated by comparing the phase map extracted from network generated and experimentally recorded interferograms. The current approach can further strengthen QPI techniques for high-resolution phase recovery using a single frame for different biomedical applications.     

Race‐specific differences in the phase coherence between blood flow and oxygenation: A simultaneous NIRS,white light spectroscopy and LDF study

Race‐specific differences in the level of glycated hemoglobin are well known. However, these differences were detected by invasive measurement of mean oxygenation, and their understanding remains far from complete. Given that oxygen is delivered to the cells by hemoglobin through the cardiovascular system, a possible approach is to investigate the phase coherence between blood flow and oxygen transportation. Here we introduce a noninvasive optical method based on simultaneous recordings using NIRS, white light spectroscopy and LDF, combined with wavelet‐based phase coherence analysis. Signals were recorded simultaneously for individuals in two groups of healthy subjects, 16 from Sub‐Saharan Africa (BA group) and 16 Europeans (CA group). It was found that the power of myogenic oscillations in oxygenated and de‐oxygenated hemoglobin is higher in the BA group, but that the phase coherence between blood flow and oxygen saturation, or blood flow and hemoglobin concentrations is higher in the CA group     

Feeding efficiency of white bream at different inorganic turbidities and light climates

Experiments were conducted to test the effects of turbidity (10–50 NTU) and light (0–2 μE m⁻² s⁻¹) on the feeding efficiency of white bream Abramis björkna preying on Chaoborus flavicans . Increased turbidity and low light levels did not have a significant impact on the feeding of white bream. In total darkness feeding was impeded indicating that white bream depends on vision for feeding. The dominance of white bream in temperate eutrophic lakes could be attributed to their success of feeding in turbid and low light environments.     

Characterising live cell behaviour: Traditional label-free and quantitative phase imaging approaches

Label-free imaging uses inherent contrast mechanisms within cells to create image contrast without introducing dyes/labels, which may confound results. Quantitative phase imaging is label-free and offers higher content and contrast compared to traditional techniques. High-contrast images facilitate generation of individual cell metrics via more robust segmentation and tracking, enabling formation of a label-free dynamic phenotype describing cell-to-cell heterogeneity and temporal changes. Compared to population-level averages, individual cell-level dynamic phenotypes have greater power to differentiate between cellular responses to treatments, which has clinical relevance e.g. in the treatment of cancer. Furthermore, as the data is obtained label-free, the same cells can be used for further assays or expansion, of potential benefit for the fields of regenerative and personalised medicine.     

Quantification of doxorubicin in biofluids using white light excitation fluorescence

A fiber optic spectrometer setup was designed for white light excitation fluorescence ‘WLEF’ based measurements. Using this setup, two different analytical methods, a self referencing ratio‐metric and a difference WLEF methods, were developed for the quantification of doxorubicin (DXR) in biofluids. It was seen that Acetonitrile (ACN) acts as an efficient and transparent extracting medium for DXR. The figures of merit and the percent recoveries of DXR in blood serum, even in presence of external fluorophores and in urine samples are comparable with existing analytical methods. The compact spectrometer is expected to be useful for easy quantification of fluorescent pharmaceuticals in biofluids. (© 2014 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Late bedtimes prevent circadian phase advances to morning bright light in adolescents

ABSTRACT

We examined phase shifts to bright morning light when sleep was restricted by delaying bedtimes. Adolescents (n = 6) had 10-h sleep/dark opportunities for 6 days. For the next 2 days, half were put to bed 4.5 h later and then allowed to sleep for 5.5 h (evening room light + sleep restriction). The others continued the 10-h sleep opportunities (sleep satiation). Then, sleep schedules were gradually shifted earlier and participants received bright light (90 min, ~6000 lux) after waking for 3 days. As expected, sleep satiation participants advanced (~2 h). Evening room light + sleep restriction participants did not shift or delayed by 2–4 h.

Abbreviations: DLMO: dim light melatonin onset.     

Nanocrystalline SrS:Ce3+ system for the generation of white light‐emitting diodes

Nanocrystalline SrS phosphors doped with Ce³⁺ ions at different concentrations (0.5, 1, 1.5 and 2 mol%) are synthesized via the solid‐state diffusion method (SSDM), which is suitable for the large‐scale production of phosphors in industrial applications. The as‐prepared samples are characterized using an X‐ray diffraction (XRD) technique, field emission scanning electron microscopy (FESEM), high‐resolution transmission electron microscopy (HRTEM) and energy‐dispersive X‐ray (EDX) analysis. The optical properties of these phosphors are analyzed using reflectance spectra, photoluminescence spectra and afterglow decay curves. The cubic structure of the SrS phosphor is confirmed by XRD analysis and the crystallite size calculated by Scherer's formula using XRD data shows the nanocrystalline nature of the phosphors. No phase change is observed with increasing concentrations of Ce³⁺ ions. The surface morphology of the prepared phosphors is determined by FESEM, which shows a sphere‐like structure and good connectivity of the grains. The authenticity of the formation of nanocrystalline phosphors is examined by HRTEM analysis. Elemental compositional information for the prepared phosphors is gathered by EDX analysis. Photoluminescence studies reveal that the emission spectra of the prepared phosphor shows broad band emission centered at 458 and 550 nm due to the transition of electrons from the 5d → 4f energy levels. The afterglow decay characteristics of different as‐synthesized SrS:Ce³⁺ nanophosphors are conceptually described. Copyright © 2016 John Wiley & Sons, Ltd.     

Multi‐ATOM: Ultrahigh‐throughput single‐cell quantitative phase imaging with subcellular resolution

A growing body of evidence has substantiated the significance of quantitative phase imaging (QPI) in enabling cost‐effective and label‐free cellular assays, which provides useful insights into understanding the biophysical properties of cells and their roles in cellular functions. However, available QPI modalities are limited by the loss of imaging resolution at high throughput and thus run short of sufficient statistical power at the single‐cell precision to define cell identities in a large and heterogeneous population of cells—hindering their utility in mainstream biomedicine and biology. Here we present a new QPI modality, coined multiplexed asymmetric‐detection time‐stretch optical microscopy (multi‐ATOM) that captures and processes quantitative label‐free single‐cell images at ultrahigh throughput without compromising subcellular resolution. We show that multi‐ATOM, based upon ultrafast phase‐gradient encoding, outperforms state‐of‐the‐art QPI in permitting robust phase retrieval at a QPI throughput of >10 000 cell/sec, bypassing the need for interferometry which inevitably compromises QPI quality under ultrafast operation. We employ multi‐ATOM for large‐scale, label‐free, multivariate, cell‐type classification (e.g. breast cancer subtypes, and leukemic cells vs peripheral blood mononuclear cells) at high accuracy (>94%). Our results suggest that multi‐ATOM could empower new strategies in large‐scale biophysical single‐cell analysis with applications in biology and enriching disease diagnostics.      

Enhanced luminescence and white light emission from Eu3+‐co‐doped K3Ca2(SO4)3Cl:Dy3+ phosphor with near visible ultraviolet excitation for white LEDs

The luminescent properties of europium (Eu)‐ and dysprosium (Dy)‐co‐doped K₃Ca₂(SO₄)₃Cl halosulfate phosphors were analyzed. This paper reports the photoluminescence (PL) properties of K₃Ca₂(SO₄)₃Cl microphosphor doped with Eu and Dy and synthesized using a cost‐effective wet chemical method. The phosphors were characterized by X‐ray diffraction and scanning electron microscopy. The CIE coordinates were calculated to display the color of the phosphor. PL emission of the prepared samples show peaks at 484 nm (blue), 575 nm (yellow), 594 nm (orange) and 617 nm (red). The emission color of the Eu,Dy‐co‐doped K₃Ca₂(SO₄)₃Cl halophosphor depends on the doping concentration and excitation wavelength. The addition of Eu in K₃Ca₂(SO₄)₃Cl:Dy greatly enhances the intensity of the blue and yellow peaks, which corresponds to the ⁴ F_9/2 → ⁶H_15/2 and ⁴ F_9/2 → ⁶H_13/2 transitions of Dy³⁺ ions (under 351 nm excitation). The Eu³⁺/Dy³⁺ co‐doping also produces white light emission for 1 mol% of Eu³⁺, 1 mol% of Dy³⁺ in the K₃Ca₂(SO₄)₃Cl lattice under 396 nm excitation, for which the calculated chromaticity coordinates are (0.35, 0.31). Thus, K₃Ca₂(SO₄)₃Cl co‐doped with Eu/Dy is a suitable candidate for NUV based white light‐emitting phosphors technology. Copyright © 2014 John Wiley & Sons, Ltd.     

两种稻螟灯下蛾峰日与月相的关系

经常规及圆形统计分析我国 2 0世纪 5 0年代灯光诱蛾资料 ,发现三化螟和二化螟的蛾峰日受到月相的显著影响。三化螟蛾峰数的平均角 (集中趋势 )对应于农历 2 6日 0时 5 3分 (P<0 0 0 1) ,二化螟对应于 2 4日 2 3时 5 3分 (P <0 0 0 1) ,二者差异不显著 (P >0 2 5 ) ,合并对应于 2 5日 11时 36分。     

An optical study of drug resistance detection in endometrial cancer cells by dynamic and quantitative phase imaging

Platinum chemosensitivity detection plays a vital role during endometrial cancer treatment because chemotherapy responses have profound influences on patient's prognosis. Although several methods can be used to detect drug resistance characteristics, studies on detecting drug sensitivity based on dynamic and quantitative phase imaging of cancer cells are rare. In this study, digital holographic microscopy was applied to distinguish drug‐resistant and nondrug‐resistant endometrial cancer cells. Based on the reconstructed phase images, temporal evolutions of cell height (CH), cell projected area (CPA) and cell volume were quantitatively measured. The results show that change rates of CH and CPA were significantly different between drug‐resistant and nondrug‐resistant endometrial cancer cells. Furthermore, the results demonstrate that morphological characteristics have the potential to be utilized to distinguish the drug sensitivity of endometrial cancer cells, and it may provide new perspectives to establish optical methods to detect drug sensitivity and guide chemotherapy in endometrial cancer.      

Myosin light chain-1: Genetic analysis of three variants found in fast white chicken muscle and investigation of linkage with the muscular dystrophy gene

Backcross and F₂ analyses have been carried out to determine the genetic basis of inheritance of three myosin light chain-1 variants present in the fast white muscle fibers of the domestic chicken. Two of the variants (types I and II) were described previously [Rushbrook, J. I., Yuan, A. I., and Stracher, A. (1982). Muscle Nerve 5:505], while the existence of the third (type III) is reported here. The results are consistent with an autosomal and allelic origin for the variants. A test linkage backcross to the muscular dystrophy gene am was found to be negative. This is the twelfth negative linkage result for the am gene.This work was supported by grants from the Muscular Dystrophy Association, Inc., and the National Institutes of Health (R23 HL27883) to Dr. Rushbrook and from the National Institutes of Health (R01 NS18438) to Dr. A. Stracher. It is a joint publication from the institutions listed below and is Scientific Contribution No. 1,070 from the Storrs Agricultural Experiment Station.     

Comparison of the effects of white light and the growth retardant paclobutrazol on the ethylene production in bean hypocotyls

At a concentration of 17 µmol·L^–1, paclobutrazol (PP), a triazole plant growth retardant, effectively reduced the elongation and increased the thickness of hypocotyls in 6-day-old Phaseolus vulgaris L. cv. Juliska seedlings, both in the light and in the dark. PP treatment did not increase the cell number in transverse sections of hypocotyls. The diameter of hypocotyls was uniform from the zone of intensive elongation along the whole hypocotyl in etiolated plants, but those grown in the light exhibited an additional lateral expansion at the base. Ethylene evolution was not reduced by PP in etiolated hypocotyls, and did not differ significantly in the elongating apical and fully grown basal zones. PP reduced the ethylene release by the growing zones in green hypocotyls, but not in the basal parts, which resulted in an increasing ethylene gradient towards the hypocotyl base. The level of 1-aminocyclopropane-1-carboxylic acid (ACC), the immediate precursor of ethylene, was much higher in retardant-treated hypocotyls than in the controls, which was due in part to the reduced malonylation. The swelling of the hypocotyl bases could be eliminated by inhibitors of ethylene biosynthesis or action, or could be induced by 10 µmol·L^–1ACC in control plants in the light. None of these treatments had a significant effect on the lateral expansion of hypocotyls in etiolated seedlings. PP treatment induced a similar effect to that of white light in etiolated seedlings, and amplified the effect of light in green plants with respect to the ACC distribution, and consequently, the ethylene production in the hypocotyls of 6-day-old bean seedlings. It can be concluded that the lateral expansion of hypocotyl bases in PP-treated green plants is controlled by ethylene.     

Using a Doppler light detection and ranging (lidar) system to characterize an atmospheric thermal providing lift for soaring raptors

ABSTRACT.   Raptors and other large birds in soaring flight take advantage of upward drafts of air called thermals to maintain altitude with minimal flapping. I used a Doppler light detection and ranging (lidar) system to characterize a thermal in which raptors were soaring. Doppler lidar allows imaging of wind fields to reveal the structure of updrafts and downdrafts in a thermal. The thermal I monitored was in the form of a horizontal convective roll created at a transition from clear sky to partly cloudy sky, and gave both lift and lateral motion to the soaring birds. The thermal was 700 m high with a vertical wind speed that peaked at 3 m/s, so raptors could have soared to and maintained that altitude as the horizontal wind moved the thermal. My results suggest that imaging wind fields with Doppler lidar can be a useful tool for studying thermals and how they are used by soaring birds. An effective combination for further study of bird flight interaction with wind phenomena would be to add lidar measurements to an established means of tracking bird flight by radio or GPS transmitters, aircraft tracking, or radar.     

3D morphological and biophysical changes in a single tachyzoite and its infected cells using three‐dimensional quantitative phase imaging

Toxoplasma gondii is an apicomplexan parasite that causes toxoplasmosis in the human body and commonly infects warm‐blooded organisms. Pathophysiology of its diseases is still an interesting issue to be studied since T gondii can infect nearly all nucleated cells. Imaging techniques are crucial for studying its pathophysiology. In T gondii‐infected cells structural and biochemical alterations occurred. To study that modification, we use digital holotomography to investigate the structure and biochemical alteration of single tachyzoite and its infected cells in a label‐free and quantitative manner. Quantification analysis was done by measuring the refractive index distribution, which provides information about the concentration and dry mass of individual cells. This study showed that holotomography could be effectively used to identify the structural and biochemical alteration in tremendously different cells in supporting pathophysiological research in particular for T gondii‐caused diseases.     

A system for imaging transverse distribution of scattered light and chlorophyll fluorescence in intact rice leaves

In order to examine the transverse distribution of scattered light and chlorophyll fluorescence in intact rice leaves, a micro-fluorescence imaging system was devised using a microscope, a CCD camera with an image intensifier, an Ar and a He-Ne laser light source, an image processor, and a microcomputer. A laser light was projected vertically on to the surface of a rice leaf segment at a cut-edge, and scattered light and induced fluorescence were observed at the cut-section from a 90° angle to the axis of the laser beam. The intensity of scattered light showed a maximum at several micrometres depth from the leaf surface and a steep gradient afterwards. Fluorescence reached a maximum crossing with the decline curve of the scattered light. The maximum of fluorescence measured at 741 nm was observed at a greater depth from the leaf surface than that at 687 nm, suggesting that part of the fluorescence of the longer wavelength was emitted due to absorption of fluorescence of the shorter wavelength. Profiles of the scattered light and the chlorophyll fluorescence depended on leaf anatomy.     

旺长期遮光及光照转换对不同肥料条件下烟草叶片光合特性的影响

采用盆栽方法研究了旺长期遮光及光照转换对不同肥料条件下烟草叶片光合速率(Pn)与荧光特性的影响。结果表明,遮光促进两种肥料条件下烟草叶片叶绿素(Chl)和类胡萝卜素(Car)含量的积累,却降低它们的Pn。其中施无机肥的烟草叶片Chl含量增加较多,而50%无机肥+50%饼肥配施烟草叶片的Car增幅显著,从而,施无机肥烟草叶片Chl/Car上升,而无机肥+饼肥配施烟草叶片Chl/Car却下降。无论从自然光转至遮荫条件下还是从遮荫条件转至自然光下,两种肥料条件下生长的烟草叶片的Pn、实际光化学效率(ΦPSⅡ)、最大光化学效率(Fv/Fm)及光化学猝灭系数(qP)均急剧下降,但与施无机肥相比,无机肥+饼肥配施烟草叶片保持较高的Pn、ΦPSⅡ、Fv/Fm、及qP,可能是饼肥促进了栽培条件下烟草植株的光生态适应性。