Poor genetic differentiation but clear cytoform divergence among cryptic species in Simulium damnosum complex (Diptera: Simuliidae)

A complex cryptic species taxonomy has been developed for the flies that vector Onchocerca volvulus L euckart in A frica. This taxonomy names cytoforms of Simulium damnosum T heobald s.l. based on chromosomal inversion polymorphisms. Researchers have linked variation in cytoforms to variation in geographical distributions and biological traits, but have failed to demonstrate that many of these cytoforms are differentiated genetically or morphologically. This may be explained by recent divergence and incomplete lineage sorting of ancestral polymorphisms. Alternatively, it may be the outcome of ongoing gene flow, with inversions maintaining sets of co‐adapted alleles and selection driving inversion frequency differences across habitats. Here, our goals were to test species delimitations in the S. damnosum complex, and determine if the poor differentiation between these species is better explained by the ancestral polymorphisms or gene‐flow hypotheses. Geometric morphometric analysis and more intensive genetic sampling of populations in N igeria only reinforced the lack of clear divergence among S. damnosum complex cytoforms. By contrast, the first statistical estimates of evolutionary relationships based on chromosomal inversion polymorphism data revealed clear signs of divergence, which lends support to the ancestral polymorphisms hypothesis. But the latter analyses may be biased by non‐neutral evolution of inversion polymorphisms; more rigorous tests of cytoform‐based species hypothesis will require deeper sampling across populations and neutral genetic markers along with explicit modelling of genetic isolation and migration.     

Cytogenetics of Simulium siamense Takaoka and Suzuki, 1984 (Diptera: Simuliidae) in northeastern Thailand

We analysed salivary gland polytene chromosomes of 796 larvae from 17 populations of Simulium siamense in northeastern Thailand. Seventeen floating and two fixed chromosome inversions were recorded. Three cytoforms (A, F and G) were recognised and two of them are new (F and G). Cytoform F is distinguished by a fixed inversion on the long arm of chromosome II (IIL-8) and cytoform G by fixed inversions on the long arm of chromosome II (IIL-8) and short arm of chromosome III (IIIS-2). Significant departures from Hardy–Weinberg equilibrium due to heterozygote deficiency in geographically intermediate populations and absence of shared polymorphic inversions of the cytoforms indicate separation of the gene pool. Morphometric analysis of the larvae revealed significant differences in body length (F = 5.00, p =0.007) and head capsule width (F = 4.68, p = 0.010) among cytoforms.     

Population genetics of the high elevation black fly Simulium (Nevermannia) feuerborni Edwards in Thailand

In this study, we examined the genetic structure and population history of the high elevation black fly Simulium feuerborni in Thailand at both cytogenetic and molecular genetic levels. Cytological examination revealed two cytoforms differentiated by fixed chromosome inversions. The distributions of the cytoforms were associated with geographic origins. Cytoform A was found in the lower north and northeast, and cytoform B was found in the upper northern region of Thailand. Molecular data based on the mitochondrial cytochrome oxidase subunit I (COI) barcoding sequence supports the separation of the cytoforms. The average sequence divergence between the two cytoforms was 3.75%, which is higher than the threshold value for the species level based on a COI barcoding sequence. Median joining network clearly differentiated the haplotypes of the cytoforms into different lineages. Population pairwise F_ST and amova analyses reveal significant genetic differentiation between cytoforms. This indicates that the low land areas separating these populations act as a gene flow barrier. No genetic differentiation was detected within cytoforms. This could be due to a recent sharing of population history. Mismatch distribution analysis revealed population expansion in the northern lineage of the cytoform B approximately 220 000 years ago. More recent expansion (32 000 years ago) was found in the lower north and northeast (cytoform A) lineage. The demographic history of S. feuerborni mirrored previous findings in black flies and other insect species in Thailand. This indicates the important role of Pleistocene climatic change on genetic structure and diversity of Southeast Asian mainland species.     

Macrogenomic Evidence for the Origin of the Black Fly Simulium suzukii (Diptera: Simuliidae) on Okinawa Island,Japan

To determine the geographic origin of the black fly Simulium suzukii on Okinawa Island, Japan, macrogenomic profiles derived from its polytene chromosomes were compared with those of mainland and other insular populations of S. suzukii and of the isomorphic Simulium tani species complex. The Okinawan population is a chromosomally unique cytoform, designated ‘D,’ which is essentially monomorphic and differs by about 27 fixed rearrangements from the chromosomal standard sequence for the subgenus Simulium and by two fixed differences from its nearest known relative, representing the type of S. suzukii, on the main islands of Japan. Chromosomal band sequences revealed two additional, sympatric cytoforms of S. suzukii, designated ‘A’ and ‘B,’ each with species status, in Korea, and a third cytoform, designated ‘C,’ on Hokkaido, Japan. A new cytoform, ‘K,’ of S. tani from Malaysia, representing the type of S. tani, is more closely related to cytoforms in Thailand, as are populations from Taiwan previously treated as S. suzukii but more closely aligned with S. tani and newly recognized as cytoform ‘L’ of the latter nominal species. Rooting of chromosomal band sequences by outgroup comparisons allowed directionality of chromosomal rearrangements to be established, enabling phylogenetic inference of cytoforms. Of 41 macrogenomic rearrangements discovered in the five new cytoforms, four provide evidence for a stepwise origin of the Okinawan population from populations characteristic of the main islands of Japan. The macrogenomic approach applied to black flies on Okinawa Island illustrates its potential utility in defining source areas for other species of flies including those that might pose medical and veterinary risks.     

Increase in the degree of inversion polymorphism in Drosophila bipectinata populations transfereed to laboratory conditions

Thirteen laboratory populations (six mass cultures and seven isofemale lines) of Drosophila bipectinata were established from files collected from six different geographic localities (four in the north and two in the south) in India. These mass cultures and isofemale lines were maintained in food bottles in the laboratory for varying number of generations by transferring about 50 files (females and males in equal number) in each generation. After several generations, all the laboratory populations were analysed chromosomally to determine the frequency of different inversions. The results indicate that all the laboratory populations remained chromosomally polymorphic due to the persistence of inversions which were originally present ion the populations. The quantitative data on the frequency of inverted gene orders and the level of inversions heterozygosity in laboratory populations are compared with those in corresponding natural populations. This comparison clearly shows that there is a considerable increase in the frequency of inverted gene orders and the level of inversion heterozygosity in laboratory populations when compared with corresponding natural populations. This is most likely to be due to selective advantage of inversion heterozygotes under stringent competition in laboratory populations. Thus heterotic buffering is associated with chromosome inversion of Drosophila bipectinata.     

Effects of land use on black fly assemblages (Diptera: Simuliidae) in submontane rivers (West Carpathians, Slovakia)

The effects of land use on black fly assemblages were investigated in submontane rivers (the Ľubochnianka River, the Revúca River, upper Váh River catchment) in the Carpathians. We recorded 11 black fly species in the Ľubochnianka River and 10 species in the Revúca River. Land use differs between the catchments; the Ľubochnianka is a primarily forested catchment, and the Revúca is markedly deforested catchment. Fifteen environmental variables were analysed. Based on the results provided by CANOCO, phosphorus level and stream slope are the most important variables and have significant influences on the variability of black fly assemblages. In spring, Prosimulium rufipes occurred along the entire lengths of the streams. The black fly assemblage of the Revúca River differs from the assemblage of the Ľubochnianka River mainly by its higher abundances of Simulium variegatum and Simulium ornatum, by the presence of Simulium carthusiense, and by the absence of Prosimulium hirtipes.     

Phylogeography of Simulium siamense Takaoka and Suzuki complex (Diptera: Simuliidae) in Thailand

The phylogeography of Simulium siamense complex was inferred from mitochondrial DNA sequences. A 586‐bp fragment of the cytochrome oxidase I was sequenced for 92 individuals from 13 populations throughout Thailand, representing five cytoforms (A, B, C, F and G). The cytoforms are not genetically different at the molecular level except for cytoform B, which is genetically distinct from the others. This might indicate that cytoform B is a distinct species. Further morphological and molecular work using other genes is needed to clarify this. Our results also argue for the need of integrated approach, both cytological and molecular studies to understanding biodiversity of black flies. The star‐like shape of the mtDNA genealogy is consistent with the sudden population expansion of the mismatch distribution analysis and large negative values of Fu's F_s and Tajima's D‐tests, indicating a population demographic expansion. The expansion time is estimated to be in the late Pleistocene (about 120 000 years ago). Therefore, the overall low level of genetic structure could be due to sharing a recent history. The ancestral haplotype was found in the mountainous area in northeastern Thailand, suggesting that this area could have been the refugium of the species complex during the Pleistocene glaciations. Our results are consistent with previous findings about population expansion in response to the Pleistocene climatic change, thus revealing the importance of this historical event in shaping the genetic structure and diversity of Southeast Asian mainland species.     

Taxonomic status of the subspecies of Teucrium lamiifolium in Turkey: reevaluation based on macro‐ and micro‐morphology,anatomy and chemistry

Teucrium stachyophyllum P. H. Davis was first described as a separate species in the ‘Syrian, Lebanon and Palestine Flora’, but was reduced to a subspecies of T. lamiifolium d’Urv. in the ‘Turkish Flora’. Studies on the macro‐ and micro‐morphology as well as the anatomy of populations of T. lamiifolium subsp. stachyophyllum (P. H. Davis) Hedge & Ekim and T. lamiifolium subsp. lamiifolium in Turkey have been carried out based on herbarium specimens and field observations. The results from the anatomical studies on stems and leaves show that although the two taxa are similar in stem anatomy, they differ in terms of mesophyll thickness and occurrence of crystals in the upper epidermal cells of the leaf. Light and scanning electron microscope analyzes revealed striking differences in colour, size, sculpture and gland density between nutlets of the two taxa. Morphological studies also showed that there were important differences between the two taxa in terms of inflorescence, indumentum, and stem length and thickness. In addition, the essential oils from aerial parts of T. lamiifolium subsp. stachyophyllum and T. lamiifolium subsp. lamiifolium were isolated by steam distillation and analysed by gas chromatography (GC) and gas chromatography–mass spectrometry (GC–MS). The major components were characterized as β‐caryophyllene (23.5–44.8%), trans‐β‐bergamotene (22.4–26.4%), germacrene D (22.2%) and (Z)‐β‐farnesene (14.0%) for subp. lamiifolium and trans‐β‐bergamotene (38.1–41.1%) and β‐caryophyllene (8.7–8.9%) for subsp. stachyophyllum, respectively. As a result of the studies, it is proposed that the taxon treated as T. lamiifolium subsp. stachyophyllum in the Turkish flora should be raised to specific rank as T. stachyophyllum.     

Cytogenetic Features of Blackfly Wilhelmia paraequina Puri (Diptera: Simuliidae) from Armenia

Three blackfly Wilhelmia paraequina populations of Armenia (rivers Debet and Megriget, channel Megri) were studied. 2n = 6: IS + IIL, IIS + IL, IIIS + IIIL. Cytological maps of polytene chromosomes were constructed. High inversion polymorphism (95.63%) was observed, with 2.6 inversions per individual. Three inversions proved to be associated with male development: Y₁ was characterized by a combination of two heterozygous inversions, IIL-3 + IIL-1, while Y₂ had another combination of heterozygous inversions, IIL-5 + IIL-3. The X chromosome had a standard homozygous IIL band pattern. The populations were shown to be similar in autosomal polymorphism. A tendency for differentiation was observed with respect to frequencies and types of sex-linked inversions: the sex determination system was Y₁X–XX in the Debet and Megriget populations and Y₂X–XX in the channel (Megri) population. On the strength of these findings, one W. paraequina morphotype was assumed to involve two cytotypes, A (Debet and Megriget populations) and B (Megri population).     

A critical note on ‘exclusive recognition’

Cenk Saracoglu conceptualizes the antipathy towards Kurdish migrants manifesting in certain cities of Turkey since the early 2000s as ‘exclusive recognition’ in his article ‘“Exclusive recognition”: the new dimensions of the question of ethnicity and nationalism in Turkey’ published in Ethnic and Racial Studies 32(4). According to the author, these recent developments represent ‘a historically specific ethnicization process’ and its sources cannot be found directly and only in historical discourses and policy of mainstream Turkish nationalism. In this note, I contradict the author's claims by asserting that the recent manifestations of anti-Kurdish sentiments are an extension of the ongoing policies of Turkish national identity based on Turkish nationalism.     

Cytosystematics of the Simulium tuberosum group (Diptera: Simuliidae) in Thailand

The polytene chromosomes of 3347 larvae of the Simulium tuberosum group in Asia were analysed, representing the largest ever cytogenetic study of black flies in the Oriental Region. Band‐by‐band comparisons, relative to the established standard chromosome map for the subgenus Simulium, revealed 17 cytogenetically distinct taxa in Thailand, plus an 18th in China. Six of these taxa correspond to morphologically described species (S. doipuiense, S. rufibasis, S. setsukoae, S. tani, S. yuphae and S. weji). Recognition of the 18 taxa is based largely on unique inversions, either fixed or sex linked, primarily in the long arm of chromosome III. The greatest cytological diversity was discovered in the S. tani lineage, with ten cytoforms. This marked chromosomal diversification within S. tani is based largely on two inversions that have assumed different roles over evolutionary time, variously functioning in different combinations as fixed inversions, sex‐linked inversions and autosomal polymorphisms. Shared unique chromosomal features, relative to the subgeneric standard chromosome map, allowed evolutionary relationships among the cytotaxa to be inferred. Fluctuations in climate during the Pleistocene might have promoted differentiation of the Southeast Asian S. tuberosum group in isolated refugia such as mountains. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 289–315.     

Use of inter-simple sequence repeat (ISSR) markers for discrimination between and within species of blackflies (Diptera: Simuliidae)

The present study is the first report of fingerprinting in blackflies (Diptera: Simuliidae), using inter-simple sequence repeat (ISSR) markers. Among five primers tested, three tetranucleotide repeat primers ((GACA)₄, (ACTG)₄, (ACAG)₄) generated a high proportion of polymorphic bands. Seven species representing various genera, subgenera or species groups were compared. No similar profiles were found. Intraspecific and interspecific banding patterns were analysed for two species in the Prosimulium hirtipes (Fries, 1824) species group and four species in the Simulium variegatum (Meigen, 1818) species group. The UPGMA cluster analysis based on Jaccard’s coefficient demonstrated the intraspecific and interspecific diversity and the resolving power of the ISSR markers to differentiate blackfly species and populations. In Simulium maximum (Knoz, 1961), geographically defined populations were successfully discriminated.     

The species delimitation problem in the Simulium damnosum complex, blackfly vectors of onchocerciasis

The Simulium damnosum Theobald complex (Diptera: Simuliidae) comprises 57 cytoforms grouped into six subcomplexes. Previous phylogenetic studies using gene sequences have not completely resolved the evolutionary relationships of the cytoforms. The present study investigated the systematics of the complex using a phylogeographic approach. The differentiation between eastern and western forms observed in the phylogenetic studies is confirmed in the estimated haplotype networks. However, haplotypes tend to group in geographical clades and not according to cytoforms. Spatial analyses of the molecular variance also resulted in optimal groupings of sequences that did not correspond to cytoform boundaries. Moreover, Mantel tests showed significant correlations, although not strong, between genetic and geographical distances. This suggests an isolation-by-distance model of differentiation. Furthermore, there are instances in which genetic differentiation between cytoforms is low and not significant. These results indicate a lack of clear genetic differentiation between the cytoforms, which may be explained either by a separation of the taxa recent enough to allow the accumulation of few genetic differences or by recombination between the genomes of the cytoforms, which may be the result of hybridization with introgression or of non-independent evolutionary lineages. The results also emphasize the need for further sampling and for the use of more variable markers in order to clarify the evolutionary history of the group.     

Genetic analysis of Turkish martens: Do two species of the genus Martes occur in Anatolia?

Stone marten (Martes foina) and European pine marten (M. martes) occur in western Eurasia. Current distributions of martens within Turkey and phylogenetic relationships among the Turkish and other populations of the two species within Eurasia remain relatively unknown. In this study, we aimed to determine genetic diversity within Martes populations inhabiting Turkey and to reveal the phylogenetic relationships among the Turkish and conspecific populations of the two marten species, using mitochondrial cytochrome b (CytB) sequences. Twenty‐four (24) haplotypes were identified among 86 marten samples collected across Turkey, including 23 novel haplotypes. Genetic distances among the Turkish haplotypes ranged from 0.1% to 0.8%, with an average of 0.3%. The 24 Turkish haplotypes were analysed together with those of conspecific populations deposited in GenBank. Phylogenetic (Bayesian Inference, maximum likelihood, neighbor‐joining) and network analyses revealed that all of the Turkish samples belonged to M. foina and that samples of M. martes were not encountered. Haplotypes of M. foina were divided into five haplogroups. The haplogroup including the two Chinese samples differed markedly from other the haplogroups. The remaining haplogroups contained samples from both the Turkish and European populations. We found that there was a genetically close relationship between the Turkish and the European stone marten populations. As a result of this study, M. martes may not be distributed in the Anatolian part of Turkey, possibly due to a barrier effect of two straits (Dardanelles and Bosporus) and the Caucasus Mountains. On the other hand, M. foina is distributed in both the Anatolian and Thracian parts of Turkey. Our results suggest that Turkey was likely one of the refuges for M. foina during Pleistocene glacial periods and is one of the centres of distribution of stone marten for Europe and the surrounding regions.     

Are cryptic species of the Lesser Egyptian Jerboa,Jaculus jaculus (Rodentia,Dipodidae), really cryptic? Re‐evaluation of their taxonomic status with new data from Israel and Sinai

Two clades of the lesser Egyptian jerboa Jaculus jaculus sensu lato were recently described in North Africa and considered as cryptic species. Members of both clades are also found in Israel, where they can be easily identified according to fur and tail colouration and morphology of the male external genitalia, but cannot be separated confidently using skull characters. Examination of type specimens demonstrated that the correct names for the two species are Jaculus jaculus (Linnaeus 1758) and Jaculus hirtipes (Lichtenstein, 1823). Comparisons of geographic and habitat differences of the two species revealed a high niche divergence between them, slightly higher in the sympatric North African populations than in the parapatric populations of Israel and Sinai. A low niche divergence was detected between North African and Middle Eastern populations of J. jaculus, and a low niche convergence between North African and Middle Eastern populations of J. hirtipes. The levels of niche differentiation coincide with those of genetic differences.     

Out of Anatolia: longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae

Many studies have addressed the latitudinal gradients in intraspecific genetic diversity of European taxa generated during postglacial range expansion from southern refugia. Although Asia Minor is known to be a centre of diversity for many taxa, relatively few studies have considered its potential role as a Pleistocene refugium or a potential source for more ancient westward range expansion into Europe. Here we address these issues for an oak gallwasp, Andricus quercustozae (Hymenoptera: Cynipidae), whose distribution extends from Morocco along the northern coast of the Mediterranean through Turkey to Iran. We use sequence data for a fragment of the mitochondrial gene cytochrome b and allele frequency data for 12 polymorphic allozyme loci to answer the following questions: (1) which regions represent current centres of genetic diversity for A. quercustozae? Do eastern populations represent one refuge or several discrete glacial refugia? (2) Can we infer the timescale and sequence of the colonization processes linking current centres of diversity? Our results suggest that A. quercustozae was present in five distinct refugia (Iberia, Italy, the Balkans, southwestern Turkey and northeastern Turkey) with recent genetic exchange between Italy and Hungary. Genetic diversity is greatest in the Turkish refugia, suggesting that European populations are either (a) derived from Asia Minor, or (b) subject to more frequent population bottlenecks. Although Iberian populations show the lowest diversity for putatively selectively neutral markers, they have colonized a new oak host and represent a genetically and biologically discrete entity within the species.     

Name typification of Umbelliferae taxa described by Joseph Franz Freyn

Thirty-three new species and 12 new infraspecific taxa of the Umbelliferae have been described by Bohemian botanist Joseph Franz Freyn (1845–1903). The names of these taxa are typified, in most cases by material preserved at the Herbarium of the Moravian Museum (BRNM) in Brno. The names of nine species proposed by Freyn are accepted in the present-day nomenclature of the family; five others are the basionyms of presently accepted names. Type material from BRNM has enabled rehabilitation of the specific status of Angelica brachyradia Freyn from Bosnia and Pastinaca dentata Freyn & Sint. from Turkey. A new nomenclatural combination is proposed (Taeniopetalum urbani (Freyn & Sint. ex H. Wolff) Pimenov). Notes on the distribution of the taxa concerned are added.     

Three ways to distinguish species: using behavioural,ecological, and molecular data to tell apart two closely related ants,Camponotus renggeri and Camponotus rufipes (Hymenoptera: Formicidae)

The closely related Camponotus renggeri and Camponotus rufipes (subgenus Myrmothrix) often live in sympatry in the Brazilian ‘cerrado’ savannah, and are distinguished by nuances in their blackish body colour and by the colour of the legs. Variation in morphological characters, however, makes species separation difficult and it has been suggested that the two species should be merged into one. As appropriate species identification is essential for studies in ecology and evolutionary biology, here we examine how natural history data (habitat preference, nesting biology) and molecular tools (nuclear and mitochondrial markers) perform in distinguishing sympatric populations of C. renggeri and C. rufipes. In our study area, C. rufipes was only seen in cerrado sensu stricto (scrub of shrubs and trees), whereas C. renggeri occurred in cerrado sensu stricto and cerradão (closed woodland). Camponotus renggeri nested underground or in fallen/erect dead trunks, whereas C. rufipes constructed distinctive nests of dry straw. Nest persistence through time was higher in C. rufipes, especially in the hot/rainy season. Nest distribution was random in C. renggeri and aggregated in C. rufipes. Molecular data consistently showed that, regardless of the source of genetic variation, the uppermost hierarchical level of divergence is observed between species, unambiguously differentiating the individuals identified as C. renggeri and C. rufipes as two independent evolutionary lineages. Mitochondrial data throughout the species' geographical ranges further confirmed a consistent genetic divergence between C. renggeri and C. rufipes along their distribution in Brazil. Our integrated approach combining morphological traits with natural history and molecular data confirms that C. renggeri and C. rufipes are valid species that can be separated in our study area relatively well. © 2015 The Linnean Society of London